data_4D34 # _model_server_result.job_id kSlajE-GijEYgBM9VPDDgA _model_server_result.datetime_utc '2024-11-09 02:11:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":600}' # _entry.id 4D34 # _exptl.entry_id 4D34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D34 _cell.length_a 58.159 _cell.length_b 106.632 _cell.length_c 156.638 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 147 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 E N01 E2Z . A E2Z 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 H ZN ZN . A ZN 900 1_555 B SG CYS 62 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 H ZN ZN . A ZN 900 1_555 B SG CYS 57 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc5 H ZN ZN . A ZN 900 1_555 A SG CYS 62 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 H ZN ZN . A ZN 900 1_555 A SG CYS 57 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 B SG CYS 147 B CYS 186 1_555 I FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc8 I FE HEM . B HEM 500 1_555 K N01 E2Z . B E2Z 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4D34 _atom_sites.fract_transf_matrix[1][1] 0.017194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 H4B A 1 600 600 H4B H4B . E 4 E2Z A 1 800 800 E2Z E2Z . F 5 ACT A 1 860 860 ACT ACT . G 6 GOL A 1 880 880 GOL GOL . H 7 ZN A 1 900 900 ZN ZN . I 2 HEM B 1 500 500 HEM HEM . J 3 H4B B 1 600 600 H4B H4B . K 4 E2Z B 1 800 800 E2Z E2Z . L 5 ACT B 1 861 861 ACT ACT . M 6 GOL B 1 880 880 GOL GOL . N 8 HOH A 1 2001 2001 HOH HOH . N 8 HOH A 2 2002 2002 HOH HOH . N 8 HOH A 3 2003 2003 HOH HOH . N 8 HOH A 4 2004 2004 HOH HOH . N 8 HOH A 5 2005 2005 HOH HOH . N 8 HOH A 6 2006 2006 HOH HOH . N 8 HOH A 7 2007 2007 HOH HOH . N 8 HOH A 8 2008 2008 HOH HOH . N 8 HOH A 9 2009 2009 HOH HOH . N 8 HOH A 10 2010 2010 HOH HOH . N 8 HOH A 11 2011 2011 HOH HOH . N 8 HOH A 12 2012 2012 HOH HOH . N 8 HOH A 13 2013 2013 HOH HOH . N 8 HOH A 14 2014 2014 HOH HOH . N 8 HOH A 15 2015 2015 HOH HOH . N 8 HOH A 16 2016 2016 HOH HOH . N 8 HOH A 17 2017 2017 HOH HOH . N 8 HOH A 18 2018 2018 HOH HOH . N 8 HOH A 19 2019 2019 HOH HOH . N 8 HOH A 20 2020 2020 HOH HOH . N 8 HOH A 21 2021 2021 HOH HOH . N 8 HOH A 22 2022 2022 HOH HOH . N 8 HOH A 23 2023 2023 HOH HOH . N 8 HOH A 24 2024 2024 HOH HOH . N 8 HOH A 25 2025 2025 HOH HOH . N 8 HOH A 26 2026 2026 HOH HOH . N 8 HOH A 27 2027 2027 HOH HOH . N 8 HOH A 28 2028 2028 HOH HOH . N 8 HOH A 29 2029 2029 HOH HOH . N 8 HOH A 30 2030 2030 HOH HOH . N 8 HOH A 31 2031 2031 HOH HOH . N 8 HOH A 32 2032 2032 HOH HOH . N 8 HOH A 33 2033 2033 HOH HOH . N 8 HOH A 34 2034 2034 HOH HOH . N 8 HOH A 35 2035 2035 HOH HOH . N 8 HOH A 36 2036 2036 HOH HOH . N 8 HOH A 37 2037 2037 HOH HOH . N 8 HOH A 38 2038 2038 HOH HOH . N 8 HOH A 39 2039 2039 HOH HOH . N 8 HOH A 40 2040 2040 HOH HOH . N 8 HOH A 41 2041 2041 HOH HOH . N 8 HOH A 42 2042 2042 HOH HOH . N 8 HOH A 43 2043 2043 HOH HOH . N 8 HOH A 44 2044 2044 HOH HOH . N 8 HOH A 45 2045 2045 HOH HOH . N 8 HOH A 46 2046 2046 HOH HOH . N 8 HOH A 47 2047 2047 HOH HOH . N 8 HOH A 48 2048 2048 HOH HOH . N 8 HOH A 49 2049 2049 HOH HOH . N 8 HOH A 50 2050 2050 HOH HOH . N 8 HOH A 51 2051 2051 HOH HOH . N 8 HOH A 52 2052 2052 HOH HOH . N 8 HOH A 53 2053 2053 HOH HOH . N 8 HOH A 54 2054 2054 HOH HOH . N 8 HOH A 55 2055 2055 HOH HOH . N 8 HOH A 56 2056 2056 HOH HOH . N 8 HOH A 57 2057 2057 HOH HOH . N 8 HOH A 58 2058 2058 HOH HOH . N 8 HOH A 59 2059 2059 HOH HOH . N 8 HOH A 60 2060 2060 HOH HOH . N 8 HOH A 61 2061 2061 HOH HOH . N 8 HOH A 62 2062 2062 HOH HOH . N 8 HOH A 63 2063 2063 HOH HOH . N 8 HOH A 64 2064 2064 HOH HOH . N 8 HOH A 65 2065 2065 HOH HOH . N 8 HOH A 66 2066 2066 HOH HOH . N 8 HOH A 67 2067 2067 HOH HOH . N 8 HOH A 68 2068 2068 HOH HOH . N 8 HOH A 69 2069 2069 HOH HOH . N 8 HOH A 70 2070 2070 HOH HOH . N 8 HOH A 71 2071 2071 HOH HOH . N 8 HOH A 72 2072 2072 HOH HOH . N 8 HOH A 73 2073 2073 HOH HOH . N 8 HOH A 74 2074 2074 HOH HOH . N 8 HOH A 75 2075 2075 HOH HOH . N 8 HOH A 76 2076 2076 HOH HOH . N 8 HOH A 77 2077 2077 HOH HOH . N 8 HOH A 78 2078 2078 HOH HOH . N 8 HOH A 79 2079 2079 HOH HOH . N 8 HOH A 80 2080 2080 HOH HOH . N 8 HOH A 81 2081 2081 HOH HOH . N 8 HOH A 82 2082 2082 HOH HOH . N 8 HOH A 83 2083 2083 HOH HOH . N 8 HOH A 84 2084 2084 HOH HOH . N 8 HOH A 85 2085 2085 HOH HOH . N 8 HOH A 86 2086 2086 HOH HOH . N 8 HOH A 87 2087 2087 HOH HOH . N 8 HOH A 88 2088 2088 HOH HOH . N 8 HOH A 89 2089 2089 HOH HOH . N 8 HOH A 90 2090 2090 HOH HOH . N 8 HOH A 91 2091 2091 HOH HOH . N 8 HOH A 92 2092 2092 HOH HOH . N 8 HOH A 93 2093 2093 HOH HOH . O 8 HOH B 1 2001 2001 HOH HOH . O 8 HOH B 2 2002 2002 HOH HOH . O 8 HOH B 3 2003 2003 HOH HOH . O 8 HOH B 4 2004 2004 HOH HOH . O 8 HOH B 5 2005 2005 HOH HOH . O 8 HOH B 6 2006 2006 HOH HOH . O 8 HOH B 7 2007 2007 HOH HOH . O 8 HOH B 8 2008 2008 HOH HOH . O 8 HOH B 9 2009 2009 HOH HOH . O 8 HOH B 10 2010 2010 HOH HOH . O 8 HOH B 11 2011 2011 HOH HOH . O 8 HOH B 12 2012 2012 HOH HOH . O 8 HOH B 13 2013 2013 HOH HOH . O 8 HOH B 14 2014 2014 HOH HOH . O 8 HOH B 15 2015 2015 HOH HOH . O 8 HOH B 16 2016 2016 HOH HOH . O 8 HOH B 17 2017 2017 HOH HOH . O 8 HOH B 18 2018 2018 HOH HOH . O 8 HOH B 19 2019 2019 HOH HOH . O 8 HOH B 20 2020 2020 HOH HOH . O 8 HOH B 21 2021 2021 HOH HOH . O 8 HOH B 22 2022 2022 HOH HOH . O 8 HOH B 23 2023 2023 HOH HOH . O 8 HOH B 24 2024 2024 HOH HOH . O 8 HOH B 25 2025 2025 HOH HOH . O 8 HOH B 26 2026 2026 HOH HOH . O 8 HOH B 27 2027 2027 HOH HOH . O 8 HOH B 28 2028 2028 HOH HOH . O 8 HOH B 29 2029 2029 HOH HOH . O 8 HOH B 30 2030 2030 HOH HOH . O 8 HOH B 31 2031 2031 HOH HOH . O 8 HOH B 32 2032 2032 HOH HOH . O 8 HOH B 33 2033 2033 HOH HOH . O 8 HOH B 34 2034 2034 HOH HOH . O 8 HOH B 35 2035 2035 HOH HOH . O 8 HOH B 36 2036 2036 HOH HOH . O 8 HOH B 37 2037 2037 HOH HOH . O 8 HOH B 38 2038 2038 HOH HOH . O 8 HOH B 39 2039 2039 HOH HOH . O 8 HOH B 40 2040 2040 HOH HOH . O 8 HOH B 41 2041 2041 HOH HOH . O 8 HOH B 42 2042 2042 HOH HOH . O 8 HOH B 43 2043 2043 HOH HOH . O 8 HOH B 44 2044 2044 HOH HOH . O 8 HOH B 45 2045 2045 HOH HOH . O 8 HOH B 46 2046 2046 HOH HOH . O 8 HOH B 47 2047 2047 HOH HOH . O 8 HOH B 48 2048 2048 HOH HOH . O 8 HOH B 49 2049 2049 HOH HOH . O 8 HOH B 50 2050 2050 HOH HOH . O 8 HOH B 51 2051 2051 HOH HOH . O 8 HOH B 52 2052 2052 HOH HOH . O 8 HOH B 53 2053 2053 HOH HOH . O 8 HOH B 54 2054 2054 HOH HOH . O 8 HOH B 55 2055 2055 HOH HOH . O 8 HOH B 56 2056 2056 HOH HOH . O 8 HOH B 57 2057 2057 HOH HOH . O 8 HOH B 58 2058 2058 HOH HOH . O 8 HOH B 59 2059 2059 HOH HOH . O 8 HOH B 60 2060 2060 HOH HOH . O 8 HOH B 61 2061 2061 HOH HOH . O 8 HOH B 62 2062 2062 HOH HOH . O 8 HOH B 63 2063 2063 HOH HOH . O 8 HOH B 64 2064 2064 HOH HOH . O 8 HOH B 65 2065 2065 HOH HOH . O 8 HOH B 66 2066 2066 HOH HOH . O 8 HOH B 67 2067 2067 HOH HOH . O 8 HOH B 68 2068 2068 HOH HOH . O 8 HOH B 69 2069 2069 HOH HOH . O 8 HOH B 70 2070 2070 HOH HOH . O 8 HOH B 71 2071 2071 HOH HOH . O 8 HOH B 72 2072 2072 HOH HOH . O 8 HOH B 73 2073 2073 HOH HOH . O 8 HOH B 74 2074 2074 HOH HOH . O 8 HOH B 75 2075 2075 HOH HOH . O 8 HOH B 76 2076 2076 HOH HOH . O 8 HOH B 77 2077 2077 HOH HOH . O 8 HOH B 78 2078 2078 HOH HOH . O 8 HOH B 79 2079 2079 HOH HOH . O 8 HOH B 80 2080 2080 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . J 3 2.755 7.038 56.286 1 57.81 ? N1 H4B 600 B 1 HETATM 2 C C2 H4B . . . J 3 2.179 7.197 57.483 1 56.34 ? C2 H4B 600 B 1 HETATM 3 N N2 H4B . . . J 3 2.475 8.334 58.132 1 56.2 ? N2 H4B 600 B 1 HETATM 4 N N3 H4B . . . J 3 1.343 6.26 57.998 1 52.81 ? N3 H4B 600 B 1 HETATM 5 C C4 H4B . . . J 3 1.111 5.143 57.26 1 54.63 ? C4 H4B 600 B 1 HETATM 6 O O4 H4B . . . J 3 0.354 4.24 57.648 1 54.81 ? O4 H4B 600 B 1 HETATM 7 C C4A H4B . . . J 3 1.71 4.96 56.029 1 56.75 ? C4A H4B 600 B 1 HETATM 8 C C8A H4B . . . J 3 2.547 5.947 55.545 1 53.1 ? C8A H4B 600 B 1 HETATM 9 N N5 H4B . . . J 3 1.49 3.838 55.298 1 53.26 ? N5 H4B 600 B 1 HETATM 10 N N8 H4B . . . J 3 3.177 5.81 54.358 1 50.08 ? N8 H4B 600 B 1 HETATM 11 C C6 H4B . . . J 3 2.538 3.441 54.387 1 49.59 ? C6 H4B 600 B 1 HETATM 12 C C7 H4B . . . J 3 2.949 4.634 53.513 1 52.62 ? C7 H4B 600 B 1 HETATM 13 C C9 H4B . . . J 3 2.135 2.218 53.575 1 51.29 ? C9 H4B 600 B 1 HETATM 14 O O9 H4B . . . J 3 0.811 2.352 53.038 1 50.54 ? O9 H4B 600 B 1 HETATM 15 C C10 H4B . . . J 3 3.122 1.972 52.442 1 51.83 ? C10 H4B 600 B 1 HETATM 16 C C11 H4B . . . J 3 2.762 0.684 51.724 1 55.83 ? C11 H4B 600 B 1 HETATM 17 O O10 H4B . . . J 3 4.468 1.903 52.929 1 49.07 ? O10 H4B 600 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #