data_4D35 # _model_server_result.job_id eHVRR9hNIjdsqJdBQXjdAQ _model_server_result.datetime_utc '2024-11-09 01:42:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":800}' # _entry.id 4D35 # _exptl.entry_id 4D35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.383 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(3-fluorophenyl)-N-{2-[2-(1H-imidazol-1-yl)pyrimidin-4-yl]ethyl}propan-1-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D35 _cell.length_a 57.633 _cell.length_b 105.896 _cell.length_c 156.954 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 147 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 E N01 4E8 . A 4E8 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 B SG CYS 147 B CYS 186 1_555 J FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc4 J FE HEM . B HEM 500 1_555 L N01 4E8 . B 4E8 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? # _chem_comp.formula 'C18 H20 F N5' _chem_comp.formula_weight 325.383 _chem_comp.id 4E8 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(3-fluorophenyl)-N-{2-[2-(1H-imidazol-1-yl)pyrimidin-4-yl]ethyl}propan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-2-(2-(1H-imidazol-1-yl)pyrimidin-4-yl)ethyl-3-(3-fluorophenyl)propan-1-amine # _atom_sites.entry_id 4D35 _atom_sites.fract_transf_matrix[1][1] 0.017351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 H4B A 1 600 600 H4B H4B . E 4 4E8 A 1 800 800 4E8 4E8 . F 5 ACT A 1 860 860 ACT ACT . G 5 ACT A 1 861 861 ACT ACT . H 6 GOL A 1 880 880 GOL GOL . I 7 ZN A 1 900 900 ZN ZN . J 2 HEM B 1 500 500 HEM HEM . K 3 H4B B 1 600 600 H4B H4B . L 4 4E8 B 1 800 800 4E8 4E8 . M 5 ACT B 1 860 860 ACT ACT . N 5 ACT B 1 861 861 ACT ACT . O 6 GOL B 1 880 880 GOL GOL . P 8 HOH A 1 2001 2001 HOH HOH . P 8 HOH A 2 2002 2002 HOH HOH . P 8 HOH A 3 2003 2003 HOH HOH . P 8 HOH A 4 2004 2004 HOH HOH . P 8 HOH A 5 2005 2005 HOH HOH . P 8 HOH A 6 2006 2006 HOH HOH . P 8 HOH A 7 2007 2007 HOH HOH . P 8 HOH A 8 2008 2008 HOH HOH . P 8 HOH A 9 2009 2009 HOH HOH . P 8 HOH A 10 2010 2010 HOH HOH . P 8 HOH A 11 2011 2011 HOH HOH . P 8 HOH A 12 2012 2012 HOH HOH . P 8 HOH A 13 2013 2013 HOH HOH . P 8 HOH A 14 2014 2014 HOH HOH . P 8 HOH A 15 2015 2015 HOH HOH . P 8 HOH A 16 2016 2016 HOH HOH . P 8 HOH A 17 2017 2017 HOH HOH . P 8 HOH A 18 2018 2018 HOH HOH . P 8 HOH A 19 2019 2019 HOH HOH . P 8 HOH A 20 2020 2020 HOH HOH . P 8 HOH A 21 2021 2021 HOH HOH . P 8 HOH A 22 2022 2022 HOH HOH . P 8 HOH A 23 2023 2023 HOH HOH . P 8 HOH A 24 2024 2024 HOH HOH . P 8 HOH A 25 2025 2025 HOH HOH . P 8 HOH A 26 2026 2026 HOH HOH . P 8 HOH A 27 2027 2027 HOH HOH . P 8 HOH A 28 2028 2028 HOH HOH . P 8 HOH A 29 2029 2029 HOH HOH . P 8 HOH A 30 2030 2030 HOH HOH . P 8 HOH A 31 2031 2031 HOH HOH . P 8 HOH A 32 2032 2032 HOH HOH . P 8 HOH A 33 2033 2033 HOH HOH . P 8 HOH A 34 2034 2034 HOH HOH . P 8 HOH A 35 2035 2035 HOH HOH . P 8 HOH A 36 2036 2036 HOH HOH . P 8 HOH A 37 2037 2037 HOH HOH . P 8 HOH A 38 2038 2038 HOH HOH . P 8 HOH A 39 2039 2039 HOH HOH . P 8 HOH A 40 2040 2040 HOH HOH . P 8 HOH A 41 2041 2041 HOH HOH . P 8 HOH A 42 2042 2042 HOH HOH . P 8 HOH A 43 2043 2043 HOH HOH . P 8 HOH A 44 2044 2044 HOH HOH . P 8 HOH A 45 2045 2045 HOH HOH . P 8 HOH A 46 2046 2046 HOH HOH . P 8 HOH A 47 2047 2047 HOH HOH . P 8 HOH A 48 2048 2048 HOH HOH . P 8 HOH A 49 2049 2049 HOH HOH . P 8 HOH A 50 2050 2050 HOH HOH . P 8 HOH A 51 2051 2051 HOH HOH . P 8 HOH A 52 2052 2052 HOH HOH . P 8 HOH A 53 2053 2053 HOH HOH . P 8 HOH A 54 2054 2054 HOH HOH . P 8 HOH A 55 2055 2055 HOH HOH . P 8 HOH A 56 2056 2056 HOH HOH . P 8 HOH A 57 2057 2057 HOH HOH . P 8 HOH A 58 2058 2058 HOH HOH . P 8 HOH A 59 2059 2059 HOH HOH . P 8 HOH A 60 2060 2060 HOH HOH . P 8 HOH A 61 2061 2061 HOH HOH . P 8 HOH A 62 2062 2062 HOH HOH . P 8 HOH A 63 2063 2063 HOH HOH . P 8 HOH A 64 2064 2064 HOH HOH . P 8 HOH A 65 2065 2065 HOH HOH . P 8 HOH A 66 2066 2066 HOH HOH . P 8 HOH A 67 2067 2067 HOH HOH . P 8 HOH A 68 2068 2068 HOH HOH . P 8 HOH A 69 2069 2069 HOH HOH . P 8 HOH A 70 2070 2070 HOH HOH . P 8 HOH A 71 2071 2071 HOH HOH . P 8 HOH A 72 2072 2072 HOH HOH . P 8 HOH A 73 2073 2073 HOH HOH . P 8 HOH A 74 2074 2074 HOH HOH . P 8 HOH A 75 2075 2075 HOH HOH . P 8 HOH A 76 2076 2076 HOH HOH . P 8 HOH A 77 2077 2077 HOH HOH . P 8 HOH A 78 2078 2078 HOH HOH . P 8 HOH A 79 2079 2079 HOH HOH . P 8 HOH A 80 2080 2080 HOH HOH . P 8 HOH A 81 2081 2081 HOH HOH . P 8 HOH A 82 2082 2082 HOH HOH . P 8 HOH A 83 2083 2083 HOH HOH . P 8 HOH A 84 2084 2084 HOH HOH . P 8 HOH A 85 2085 2085 HOH HOH . P 8 HOH A 86 2086 2086 HOH HOH . P 8 HOH A 87 2087 2087 HOH HOH . P 8 HOH A 88 2088 2088 HOH HOH . P 8 HOH A 89 2089 2089 HOH HOH . P 8 HOH A 90 2090 2090 HOH HOH . P 8 HOH A 91 2091 2091 HOH HOH . P 8 HOH A 92 2092 2092 HOH HOH . P 8 HOH A 93 2093 2093 HOH HOH . P 8 HOH A 94 2094 2094 HOH HOH . P 8 HOH A 95 2095 2095 HOH HOH . P 8 HOH A 96 2096 2096 HOH HOH . P 8 HOH A 97 2097 2097 HOH HOH . P 8 HOH A 98 2098 2098 HOH HOH . P 8 HOH A 99 2099 2099 HOH HOH . P 8 HOH A 100 2100 2100 HOH HOH . P 8 HOH A 101 2101 2101 HOH HOH . P 8 HOH A 102 2102 2102 HOH HOH . P 8 HOH A 103 2103 2103 HOH HOH . P 8 HOH A 104 2104 2104 HOH HOH . P 8 HOH A 105 2105 2105 HOH HOH . P 8 HOH A 106 2106 2106 HOH HOH . P 8 HOH A 107 2107 2107 HOH HOH . P 8 HOH A 108 2108 2108 HOH HOH . P 8 HOH A 109 2109 2109 HOH HOH . P 8 HOH A 110 2110 2110 HOH HOH . P 8 HOH A 111 2111 2111 HOH HOH . P 8 HOH A 112 2112 2112 HOH HOH . P 8 HOH A 113 2113 2113 HOH HOH . P 8 HOH A 114 2114 2114 HOH HOH . P 8 HOH A 115 2115 2115 HOH HOH . P 8 HOH A 116 2116 2116 HOH HOH . P 8 HOH A 117 2117 2117 HOH HOH . P 8 HOH A 118 2118 2118 HOH HOH . P 8 HOH A 119 2119 2119 HOH HOH . P 8 HOH A 120 2120 2120 HOH HOH . P 8 HOH A 121 2121 2121 HOH HOH . P 8 HOH A 122 2122 2122 HOH HOH . P 8 HOH A 123 2123 2123 HOH HOH . P 8 HOH A 124 2124 2124 HOH HOH . P 8 HOH A 125 2125 2125 HOH HOH . P 8 HOH A 126 2126 2126 HOH HOH . Q 8 HOH B 1 2001 2001 HOH HOH . Q 8 HOH B 2 2002 2002 HOH HOH . Q 8 HOH B 3 2003 2003 HOH HOH . Q 8 HOH B 4 2004 2004 HOH HOH . Q 8 HOH B 5 2005 2005 HOH HOH . Q 8 HOH B 6 2006 2006 HOH HOH . Q 8 HOH B 7 2007 2007 HOH HOH . Q 8 HOH B 8 2008 2008 HOH HOH . Q 8 HOH B 9 2009 2009 HOH HOH . Q 8 HOH B 10 2010 2010 HOH HOH . Q 8 HOH B 11 2011 2011 HOH HOH . Q 8 HOH B 12 2012 2012 HOH HOH . Q 8 HOH B 13 2013 2013 HOH HOH . Q 8 HOH B 14 2014 2014 HOH HOH . Q 8 HOH B 15 2015 2015 HOH HOH . Q 8 HOH B 16 2016 2016 HOH HOH . Q 8 HOH B 17 2017 2017 HOH HOH . Q 8 HOH B 18 2018 2018 HOH HOH . Q 8 HOH B 19 2019 2019 HOH HOH . Q 8 HOH B 20 2020 2020 HOH HOH . Q 8 HOH B 21 2021 2021 HOH HOH . Q 8 HOH B 22 2022 2022 HOH HOH . Q 8 HOH B 23 2023 2023 HOH HOH . Q 8 HOH B 24 2024 2024 HOH HOH . Q 8 HOH B 25 2025 2025 HOH HOH . Q 8 HOH B 26 2026 2026 HOH HOH . Q 8 HOH B 27 2027 2027 HOH HOH . Q 8 HOH B 28 2028 2028 HOH HOH . Q 8 HOH B 29 2029 2029 HOH HOH . Q 8 HOH B 30 2030 2030 HOH HOH . Q 8 HOH B 31 2031 2031 HOH HOH . Q 8 HOH B 32 2032 2032 HOH HOH . Q 8 HOH B 33 2033 2033 HOH HOH . Q 8 HOH B 34 2034 2034 HOH HOH . Q 8 HOH B 35 2035 2035 HOH HOH . Q 8 HOH B 36 2036 2036 HOH HOH . Q 8 HOH B 37 2037 2037 HOH HOH . Q 8 HOH B 38 2038 2038 HOH HOH . Q 8 HOH B 39 2039 2039 HOH HOH . Q 8 HOH B 40 2040 2040 HOH HOH . Q 8 HOH B 41 2041 2041 HOH HOH . Q 8 HOH B 42 2042 2042 HOH HOH . Q 8 HOH B 43 2043 2043 HOH HOH . Q 8 HOH B 44 2044 2044 HOH HOH . Q 8 HOH B 45 2045 2045 HOH HOH . Q 8 HOH B 46 2046 2046 HOH HOH . Q 8 HOH B 47 2047 2047 HOH HOH . Q 8 HOH B 48 2048 2048 HOH HOH . Q 8 HOH B 49 2049 2049 HOH HOH . Q 8 HOH B 50 2050 2050 HOH HOH . Q 8 HOH B 51 2051 2051 HOH HOH . Q 8 HOH B 52 2052 2052 HOH HOH . Q 8 HOH B 53 2053 2053 HOH HOH . Q 8 HOH B 54 2054 2054 HOH HOH . Q 8 HOH B 55 2055 2055 HOH HOH . Q 8 HOH B 56 2056 2056 HOH HOH . Q 8 HOH B 57 2057 2057 HOH HOH . Q 8 HOH B 58 2058 2058 HOH HOH . Q 8 HOH B 59 2059 2059 HOH HOH . Q 8 HOH B 60 2060 2060 HOH HOH . Q 8 HOH B 61 2061 2061 HOH HOH . Q 8 HOH B 62 2062 2062 HOH HOH . Q 8 HOH B 63 2063 2063 HOH HOH . Q 8 HOH B 64 2064 2064 HOH HOH . Q 8 HOH B 65 2065 2065 HOH HOH . Q 8 HOH B 66 2066 2066 HOH HOH . Q 8 HOH B 67 2067 2067 HOH HOH . Q 8 HOH B 68 2068 2068 HOH HOH . Q 8 HOH B 69 2069 2069 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 4E8 . . . E 4 8.079 9.718 31.217 1 43.84 ? N01 4E8 800 A 1 HETATM 2 C C02 4E8 . . . E 4 8.508 10.704 32.028 1 37.21 ? C02 4E8 800 A 1 HETATM 3 N N03 4E8 . . . E 4 8.683 11.754 31.212 1 44.76 ? N03 4E8 800 A 1 HETATM 4 C C04 4E8 . . . E 4 8.407 11.494 29.935 1 37.85 ? C04 4E8 800 A 1 HETATM 5 C C05 4E8 . . . E 4 8.04 10.16 29.938 1 38.77 ? C05 4E8 800 A 1 HETATM 6 C C1' 4E8 . . . E 4 15.525 15.535 38.616 1 103.43 ? C1' 4E8 800 A 1 HETATM 7 N N11 4E8 . . . E 4 8.713 14.07 30.839 1 43.72 ? N11 4E8 800 A 1 HETATM 8 C C12 4E8 . . . E 4 9.037 13.001 31.629 1 41.97 ? C12 4E8 800 A 1 HETATM 9 N N13 4E8 . . . E 4 9.678 13.22 32.815 1 45.56 ? N13 4E8 800 A 1 HETATM 10 C C14 4E8 . . . E 4 10.036 14.485 33.187 1 46.51 ? C14 4E8 800 A 1 HETATM 11 C C15 4E8 . . . E 4 9.714 15.571 32.386 1 40.49 ? C15 4E8 800 A 1 HETATM 12 C C16 4E8 . . . E 4 9.034 15.327 31.198 1 43.53 ? C16 4E8 800 A 1 HETATM 13 C C17 4E8 . . . E 4 10.756 14.74 34.467 1 42.79 ? C17 4E8 800 A 1 HETATM 14 C C18 4E8 . . . E 4 11.873 13.741 34.674 1 39.49 ? C18 4E8 800 A 1 HETATM 15 N N19 4E8 . . . E 4 12.391 14.047 36.017 1 42.65 ? N19 4E8 800 A 1 HETATM 16 C C2' 4E8 . . . E 4 16.172 16.78 38.692 1 116.45 ? C2' 4E8 800 A 1 HETATM 17 C C20 4E8 . . . E 4 13.716 14.682 35.93 1 50.62 ? C20 4E8 800 A 1 HETATM 18 C C21 4E8 . . . E 4 13.797 15.863 36.844 1 58.23 ? C21 4E8 800 A 1 HETATM 19 C C22 4E8 . . . E 4 14.053 15.426 38.272 1 81.36 ? C22 4E8 800 A 1 HETATM 20 C C3' 4E8 . . . E 4 17.535 16.853 39.018 1 123.68 ? C3' 4E8 800 A 1 HETATM 21 C C4' 4E8 . . . E 4 18.239 15.672 39.282 1 126 ? C4' 4E8 800 A 1 HETATM 22 C C5' 4E8 . . . E 4 17.596 14.431 39.218 1 122.38 ? C5' 4E8 800 A 1 HETATM 23 C C6' 4E8 . . . E 4 16.241 14.365 38.884 1 113.69 ? C6' 4E8 800 A 1 HETATM 24 F F7' 4E8 . . . E 4 18.176 18.043 39.088 1 119.53 ? F7' 4E8 800 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #