data_4D3W # _model_server_result.job_id bNpyYaYLEzVVpJcw7QDang _model_server_result.datetime_utc '2024-11-12 20:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4D3W # _exptl.entry_id 4D3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D3W _cell.length_a 55.01 _cell.length_b 55.01 _cell.length_c 139.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL NGA C1 O1 . O3 HO3 . sing 2 ? 2 2 1 GAL A2G C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 y B NGA 1 B 1 NGA A 1267 NGA 2 y B A2G 1 B 1 A2G A 1268 A2G 2 n B GAL 2 B 2 GAL A 1266 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 50 1_555 A SG CYS 170 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 69 A CYS 78 1_555 A SG CYS 110 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 171 A CYS 180 1_555 A SG CYS 253 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 B O3 NGA . B NGA 1 1_555 B C1 GAL . B GAL 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale2 B O3 A2G . B A2G 1 1_555 B C1 GAL . B GAL 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.419 ? metalc ? metalc1 A OD1 ASP 155 A ASP 164 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc2 A OD2 ASP 156 A ASP 165 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc3 A OD1 ASN 216 A ASN 225 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 A O GLU 218 A GLU 227 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 A O ASP 220 A ASP 229 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 C CA CA . A CA 301 1_555 B O3 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 C CA CA . A CA 301 1_555 B O4 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4D3W _atom_sites.fract_transf_matrix[1][1] 0.018179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1265 CA CA . D 4 GOL A 1 305 1269 GOL GOL . E 5 HOH A 1 401 2039 HOH HOH . E 5 HOH A 2 402 2237 HOH HOH . E 5 HOH A 3 403 2146 HOH HOH . E 5 HOH A 4 404 2041 HOH HOH . E 5 HOH A 5 405 2170 HOH HOH . E 5 HOH A 6 406 2194 HOH HOH . E 5 HOH A 7 407 2042 HOH HOH . E 5 HOH A 8 408 2132 HOH HOH . E 5 HOH A 9 409 2002 HOH HOH . E 5 HOH A 10 410 2215 HOH HOH . E 5 HOH A 11 411 2071 HOH HOH . E 5 HOH A 12 412 2157 HOH HOH . E 5 HOH A 13 413 2110 HOH HOH . E 5 HOH A 14 414 2061 HOH HOH . E 5 HOH A 15 415 2078 HOH HOH . E 5 HOH A 16 416 2135 HOH HOH . E 5 HOH A 17 417 2098 HOH HOH . E 5 HOH A 18 418 2033 HOH HOH . E 5 HOH A 19 419 2205 HOH HOH . E 5 HOH A 20 420 2006 HOH HOH . E 5 HOH A 21 421 2072 HOH HOH . E 5 HOH A 22 422 2093 HOH HOH . E 5 HOH A 23 423 2202 HOH HOH . E 5 HOH A 24 424 2144 HOH HOH . E 5 HOH A 25 425 2172 HOH HOH . E 5 HOH A 26 426 2079 HOH HOH . E 5 HOH A 27 427 2152 HOH HOH . E 5 HOH A 28 428 2148 HOH HOH . E 5 HOH A 29 429 2090 HOH HOH . E 5 HOH A 30 430 2022 HOH HOH . E 5 HOH A 31 431 2221 HOH HOH . E 5 HOH A 32 432 2149 HOH HOH . E 5 HOH A 33 433 2096 HOH HOH . E 5 HOH A 34 434 2080 HOH HOH . E 5 HOH A 35 435 2210 HOH HOH . E 5 HOH A 36 436 2182 HOH HOH . E 5 HOH A 37 437 2062 HOH HOH . E 5 HOH A 38 438 2187 HOH HOH . E 5 HOH A 39 439 2105 HOH HOH . E 5 HOH A 40 440 2208 HOH HOH . E 5 HOH A 41 441 2084 HOH HOH . E 5 HOH A 42 442 2156 HOH HOH . E 5 HOH A 43 443 2116 HOH HOH . E 5 HOH A 44 444 2198 HOH HOH . E 5 HOH A 45 445 2004 HOH HOH . E 5 HOH A 46 446 2236 HOH HOH . E 5 HOH A 47 447 2012 HOH HOH . E 5 HOH A 48 448 2220 HOH HOH . E 5 HOH A 49 449 2019 HOH HOH . E 5 HOH A 50 450 2038 HOH HOH . E 5 HOH A 51 451 2118 HOH HOH . E 5 HOH A 52 452 2133 HOH HOH . E 5 HOH A 53 453 2087 HOH HOH . E 5 HOH A 54 454 2015 HOH HOH . E 5 HOH A 55 455 2047 HOH HOH . E 5 HOH A 56 456 2216 HOH HOH . E 5 HOH A 57 457 2145 HOH HOH . E 5 HOH A 58 458 2212 HOH HOH . E 5 HOH A 59 459 2227 HOH HOH . E 5 HOH A 60 460 2008 HOH HOH . E 5 HOH A 61 461 2207 HOH HOH . E 5 HOH A 62 462 2037 HOH HOH . E 5 HOH A 63 463 2201 HOH HOH . E 5 HOH A 64 464 2184 HOH HOH . E 5 HOH A 65 465 2240 HOH HOH . E 5 HOH A 66 466 2176 HOH HOH . E 5 HOH A 67 467 2211 HOH HOH . E 5 HOH A 68 468 2122 HOH HOH . E 5 HOH A 69 469 2114 HOH HOH . E 5 HOH A 70 470 2032 HOH HOH . E 5 HOH A 71 471 2076 HOH HOH . E 5 HOH A 72 472 2155 HOH HOH . E 5 HOH A 73 473 2034 HOH HOH . E 5 HOH A 74 474 2162 HOH HOH . E 5 HOH A 75 475 2203 HOH HOH . E 5 HOH A 76 476 2191 HOH HOH . E 5 HOH A 77 477 2129 HOH HOH . E 5 HOH A 78 478 2164 HOH HOH . E 5 HOH A 79 479 2234 HOH HOH . E 5 HOH A 80 480 2005 HOH HOH . E 5 HOH A 81 481 2010 HOH HOH . E 5 HOH A 82 482 2136 HOH HOH . E 5 HOH A 83 483 2219 HOH HOH . E 5 HOH A 84 484 2134 HOH HOH . E 5 HOH A 85 485 2186 HOH HOH . E 5 HOH A 86 486 2106 HOH HOH . E 5 HOH A 87 487 2161 HOH HOH . E 5 HOH A 88 488 2166 HOH HOH . E 5 HOH A 89 489 2081 HOH HOH . E 5 HOH A 90 490 2154 HOH HOH . E 5 HOH A 91 491 2217 HOH HOH . E 5 HOH A 92 492 2241 HOH HOH . E 5 HOH A 93 493 2026 HOH HOH . E 5 HOH A 94 494 2040 HOH HOH . E 5 HOH A 95 495 2141 HOH HOH . E 5 HOH A 96 496 2123 HOH HOH . E 5 HOH A 97 497 2209 HOH HOH . E 5 HOH A 98 498 2147 HOH HOH . E 5 HOH A 99 499 2230 HOH HOH . E 5 HOH A 100 500 2009 HOH HOH . E 5 HOH A 101 501 2151 HOH HOH . E 5 HOH A 102 502 2060 HOH HOH . E 5 HOH A 103 503 2200 HOH HOH . E 5 HOH A 104 504 2226 HOH HOH . E 5 HOH A 105 505 2204 HOH HOH . E 5 HOH A 106 506 2117 HOH HOH . E 5 HOH A 107 507 2206 HOH HOH . E 5 HOH A 108 508 2013 HOH HOH . E 5 HOH A 109 509 2046 HOH HOH . E 5 HOH A 110 510 2225 HOH HOH . E 5 HOH A 111 511 2050 HOH HOH . E 5 HOH A 112 512 2095 HOH HOH . E 5 HOH A 113 513 2223 HOH HOH . E 5 HOH A 114 514 2099 HOH HOH . E 5 HOH A 115 515 2115 HOH HOH . E 5 HOH A 116 516 2101 HOH HOH . E 5 HOH A 117 517 2082 HOH HOH . E 5 HOH A 118 518 2229 HOH HOH . E 5 HOH A 119 519 2056 HOH HOH . E 5 HOH A 120 520 2104 HOH HOH . E 5 HOH A 121 521 2014 HOH HOH . E 5 HOH A 122 522 2007 HOH HOH . E 5 HOH A 123 523 2180 HOH HOH . E 5 HOH A 124 524 2228 HOH HOH . E 5 HOH A 125 525 2036 HOH HOH . E 5 HOH A 126 526 2168 HOH HOH . E 5 HOH A 127 527 2185 HOH HOH . E 5 HOH A 128 528 2171 HOH HOH . E 5 HOH A 129 529 2049 HOH HOH . E 5 HOH A 130 530 2001 HOH HOH . E 5 HOH A 131 531 2083 HOH HOH . E 5 HOH A 132 532 2173 HOH HOH . E 5 HOH A 133 533 2030 HOH HOH . E 5 HOH A 134 534 2124 HOH HOH . E 5 HOH A 135 535 2179 HOH HOH . E 5 HOH A 136 536 2195 HOH HOH . E 5 HOH A 137 537 2190 HOH HOH . E 5 HOH A 138 538 2192 HOH HOH . E 5 HOH A 139 539 2139 HOH HOH . E 5 HOH A 140 540 2017 HOH HOH . E 5 HOH A 141 541 2085 HOH HOH . E 5 HOH A 142 542 2121 HOH HOH . E 5 HOH A 143 543 2197 HOH HOH . E 5 HOH A 144 544 2088 HOH HOH . E 5 HOH A 145 545 2165 HOH HOH . E 5 HOH A 146 546 2160 HOH HOH . E 5 HOH A 147 547 2035 HOH HOH . E 5 HOH A 148 548 2031 HOH HOH . E 5 HOH A 149 549 2138 HOH HOH . E 5 HOH A 150 550 2169 HOH HOH . E 5 HOH A 151 551 2193 HOH HOH . E 5 HOH A 152 552 2113 HOH HOH . E 5 HOH A 153 553 2150 HOH HOH . E 5 HOH A 154 554 2178 HOH HOH . E 5 HOH A 155 555 2055 HOH HOH . E 5 HOH A 156 556 2077 HOH HOH . E 5 HOH A 157 557 2188 HOH HOH . E 5 HOH A 158 558 2094 HOH HOH . E 5 HOH A 159 559 2222 HOH HOH . E 5 HOH A 160 560 2233 HOH HOH . E 5 HOH A 161 561 2068 HOH HOH . E 5 HOH A 162 562 2011 HOH HOH . E 5 HOH A 163 563 2214 HOH HOH . E 5 HOH A 164 564 2218 HOH HOH . E 5 HOH A 165 565 2163 HOH HOH . E 5 HOH A 166 566 2153 HOH HOH . E 5 HOH A 167 567 2053 HOH HOH . E 5 HOH A 168 568 2107 HOH HOH . E 5 HOH A 169 569 2126 HOH HOH . E 5 HOH A 170 570 2108 HOH HOH . E 5 HOH A 171 571 2054 HOH HOH . E 5 HOH A 172 572 2025 HOH HOH . E 5 HOH A 173 573 2119 HOH HOH . E 5 HOH A 174 574 2043 HOH HOH . E 5 HOH A 175 575 2120 HOH HOH . E 5 HOH A 176 576 2137 HOH HOH . E 5 HOH A 177 577 2177 HOH HOH . E 5 HOH A 178 578 2058 HOH HOH . E 5 HOH A 179 579 2143 HOH HOH . E 5 HOH A 180 580 2112 HOH HOH . E 5 HOH A 181 581 2020 HOH HOH . E 5 HOH A 182 582 2199 HOH HOH . E 5 HOH A 183 583 2224 HOH HOH . E 5 HOH A 184 584 2097 HOH HOH . E 5 HOH A 185 585 2175 HOH HOH . E 5 HOH A 186 586 2142 HOH HOH . E 5 HOH A 187 587 2167 HOH HOH . E 5 HOH A 188 588 2016 HOH HOH . E 5 HOH A 189 589 2174 HOH HOH . E 5 HOH A 190 590 2057 HOH HOH . E 5 HOH A 191 591 2089 HOH HOH . E 5 HOH A 192 592 2196 HOH HOH . E 5 HOH A 193 593 2127 HOH HOH . E 5 HOH A 194 594 2063 HOH HOH . E 5 HOH A 195 595 2158 HOH HOH . E 5 HOH A 196 596 2238 HOH HOH . E 5 HOH A 197 597 2091 HOH HOH . E 5 HOH A 198 598 2213 HOH HOH . E 5 HOH A 199 599 2018 HOH HOH . E 5 HOH A 200 600 2092 HOH HOH . E 5 HOH A 201 601 2140 HOH HOH . E 5 HOH A 202 602 2131 HOH HOH . E 5 HOH A 203 603 2189 HOH HOH . E 5 HOH A 204 604 2125 HOH HOH . E 5 HOH A 205 605 2181 HOH HOH . E 5 HOH A 206 606 2235 HOH HOH . E 5 HOH A 207 607 2051 HOH HOH . E 5 HOH A 208 608 2103 HOH HOH . E 5 HOH A 209 609 2100 HOH HOH . E 5 HOH A 210 610 2064 HOH HOH . E 5 HOH A 211 611 2065 HOH HOH . E 5 HOH A 212 612 2073 HOH HOH . E 5 HOH A 213 613 2109 HOH HOH . E 5 HOH A 214 614 2024 HOH HOH . E 5 HOH A 215 615 2048 HOH HOH . E 5 HOH A 216 616 2066 HOH HOH . E 5 HOH A 217 617 2023 HOH HOH . E 5 HOH A 218 618 2003 HOH HOH . E 5 HOH A 219 619 2029 HOH HOH . E 5 HOH A 220 620 2086 HOH HOH . E 5 HOH A 221 621 2021 HOH HOH . E 5 HOH A 222 622 2130 HOH HOH . E 5 HOH A 223 623 2052 HOH HOH . E 5 HOH A 224 624 2102 HOH HOH . E 5 HOH A 225 625 2027 HOH HOH . E 5 HOH A 226 626 2075 HOH HOH . E 5 HOH A 227 627 2044 HOH HOH . E 5 HOH A 228 628 2045 HOH HOH . E 5 HOH A 229 629 2111 HOH HOH . E 5 HOH A 230 630 2231 HOH HOH . E 5 HOH A 231 631 2067 HOH HOH . E 5 HOH A 232 632 2069 HOH HOH . E 5 HOH A 233 633 2059 HOH HOH . E 5 HOH A 234 634 2028 HOH HOH . E 5 HOH A 235 635 2074 HOH HOH . E 5 HOH A 236 636 2070 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.988 _atom_site.Cartn_y 29.77 _atom_site.Cartn_z 6.592 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #