data_4D46 # _model_server_result.job_id zpgePshcqahctylrFeTS1A _model_server_result.datetime_utc '2024-10-18 18:21:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1259}' # _entry.id 4D46 # _exptl.entry_id 4D46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.557 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-bromo-2-(4-chloro-2-hydroxyphenoxy)benzonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D46 _cell.length_a 79.144 _cell.length_b 79.144 _cell.length_c 322.316 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -53.719333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C13 H7 Br Cl N O2' _chem_comp.formula_weight 324.557 _chem_comp.id J47 _chem_comp.mon_nstd_flag . _chem_comp.name 5-bromo-2-(4-chloro-2-hydroxyphenoxy)benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C4 J47 sing 173 n n C3 C4 J47 doub 174 n y C3 C2 J47 sing 175 n y C4 C5 J47 sing 176 n y N1 C1 J47 trip 177 n n C1 C2 J47 sing 178 n n C2 C7 J47 doub 179 n y C5 C6 J47 doub 180 n y C7 C6 J47 sing 181 n y C7 O1 J47 sing 182 n n O1 C8 J47 sing 183 n n C8 C9 J47 doub 184 n y C8 C10 J47 sing 185 n y C9 C13 J47 sing 186 n y O2 C10 J47 sing 187 n n C10 C11 J47 doub 188 n y C13 C12 J47 doub 189 n y C11 C12 J47 sing 190 n y C12 CL1 J47 sing 191 n n C3 H1 J47 sing 192 n n C5 H2 J47 sing 193 n n C6 H3 J47 sing 194 n n C9 H4 J47 sing 195 n n O2 H5 J47 sing 196 n n C11 H6 J47 sing 197 n n C13 H7 J47 sing 198 n n # _atom_sites.entry_id 4D46 _atom_sites.fract_transf_matrix[1][1] 0.012635 _atom_sites.fract_transf_matrix[1][2] 0.007295 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 1258 1258 NAD NAD . D 3 J47 A 1 1259 1259 J47 J47 . E 2 NAD B 1 1257 1257 NAD NAD . F 3 J47 B 1 1258 1258 J47 J47 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . G 4 HOH A 80 2080 2080 HOH HOH . G 4 HOH A 81 2081 2081 HOH HOH . G 4 HOH A 82 2082 2082 HOH HOH . G 4 HOH A 83 2083 2083 HOH HOH . G 4 HOH A 84 2084 2084 HOH HOH . G 4 HOH A 85 2085 2085 HOH HOH . G 4 HOH A 86 2086 2086 HOH HOH . G 4 HOH A 87 2087 2087 HOH HOH . G 4 HOH A 88 2088 2088 HOH HOH . G 4 HOH A 89 2089 2089 HOH HOH . G 4 HOH A 90 2090 2090 HOH HOH . G 4 HOH A 91 2091 2091 HOH HOH . G 4 HOH A 92 2092 2092 HOH HOH . G 4 HOH A 93 2093 2093 HOH HOH . G 4 HOH A 94 2094 2094 HOH HOH . G 4 HOH A 95 2095 2095 HOH HOH . G 4 HOH A 96 2096 2096 HOH HOH . G 4 HOH A 97 2097 2097 HOH HOH . G 4 HOH A 98 2098 2098 HOH HOH . G 4 HOH A 99 2099 2099 HOH HOH . G 4 HOH A 100 2100 2100 HOH HOH . G 4 HOH A 101 2101 2101 HOH HOH . G 4 HOH A 102 2102 2102 HOH HOH . G 4 HOH A 103 2103 2103 HOH HOH . G 4 HOH A 104 2104 2104 HOH HOH . G 4 HOH A 105 2105 2105 HOH HOH . G 4 HOH A 106 2106 2106 HOH HOH . G 4 HOH A 107 2107 2107 HOH HOH . G 4 HOH A 108 2108 2108 HOH HOH . G 4 HOH A 109 2109 2109 HOH HOH . G 4 HOH A 110 2110 2110 HOH HOH . G 4 HOH A 111 2111 2111 HOH HOH . G 4 HOH A 112 2112 2112 HOH HOH . G 4 HOH A 113 2113 2113 HOH HOH . G 4 HOH A 114 2114 2114 HOH HOH . G 4 HOH A 115 2115 2115 HOH HOH . G 4 HOH A 116 2116 2116 HOH HOH . G 4 HOH A 117 2117 2117 HOH HOH . G 4 HOH A 118 2118 2118 HOH HOH . G 4 HOH A 119 2119 2119 HOH HOH . G 4 HOH A 120 2120 2120 HOH HOH . G 4 HOH A 121 2121 2121 HOH HOH . G 4 HOH A 122 2122 2122 HOH HOH . G 4 HOH A 123 2123 2123 HOH HOH . G 4 HOH A 124 2124 2124 HOH HOH . G 4 HOH A 125 2125 2125 HOH HOH . G 4 HOH A 126 2126 2126 HOH HOH . G 4 HOH A 127 2127 2127 HOH HOH . G 4 HOH A 128 2128 2128 HOH HOH . G 4 HOH A 129 2129 2129 HOH HOH . G 4 HOH A 130 2130 2130 HOH HOH . G 4 HOH A 131 2131 2131 HOH HOH . G 4 HOH A 132 2132 2132 HOH HOH . G 4 HOH A 133 2133 2133 HOH HOH . G 4 HOH A 134 2134 2134 HOH HOH . G 4 HOH A 135 2135 2135 HOH HOH . G 4 HOH A 136 2136 2136 HOH HOH . G 4 HOH A 137 2137 2137 HOH HOH . G 4 HOH A 138 2138 2138 HOH HOH . G 4 HOH A 139 2139 2139 HOH HOH . G 4 HOH A 140 2140 2140 HOH HOH . G 4 HOH A 141 2141 2141 HOH HOH . G 4 HOH A 142 2142 2142 HOH HOH . G 4 HOH A 143 2143 2143 HOH HOH . G 4 HOH A 144 2144 2144 HOH HOH . G 4 HOH A 145 2145 2145 HOH HOH . G 4 HOH A 146 2146 2146 HOH HOH . G 4 HOH A 147 2147 2147 HOH HOH . G 4 HOH A 148 2148 2148 HOH HOH . G 4 HOH A 149 2149 2149 HOH HOH . G 4 HOH A 150 2150 2150 HOH HOH . G 4 HOH A 151 2151 2151 HOH HOH . G 4 HOH A 152 2152 2152 HOH HOH . G 4 HOH A 153 2153 2153 HOH HOH . G 4 HOH A 154 2154 2154 HOH HOH . G 4 HOH A 155 2155 2155 HOH HOH . G 4 HOH A 156 2156 2156 HOH HOH . G 4 HOH A 157 2157 2157 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . H 4 HOH B 33 2033 2033 HOH HOH . H 4 HOH B 34 2034 2034 HOH HOH . H 4 HOH B 35 2035 2035 HOH HOH . H 4 HOH B 36 2036 2036 HOH HOH . H 4 HOH B 37 2037 2037 HOH HOH . H 4 HOH B 38 2038 2038 HOH HOH . H 4 HOH B 39 2039 2039 HOH HOH . H 4 HOH B 40 2040 2040 HOH HOH . H 4 HOH B 41 2041 2041 HOH HOH . H 4 HOH B 42 2042 2042 HOH HOH . H 4 HOH B 43 2043 2043 HOH HOH . H 4 HOH B 44 2044 2044 HOH HOH . H 4 HOH B 45 2045 2045 HOH HOH . H 4 HOH B 46 2046 2046 HOH HOH . H 4 HOH B 47 2047 2047 HOH HOH . H 4 HOH B 48 2048 2048 HOH HOH . H 4 HOH B 49 2049 2049 HOH HOH . H 4 HOH B 50 2050 2050 HOH HOH . H 4 HOH B 51 2051 2051 HOH HOH . H 4 HOH B 52 2052 2052 HOH HOH . H 4 HOH B 53 2053 2053 HOH HOH . H 4 HOH B 54 2054 2054 HOH HOH . H 4 HOH B 55 2055 2055 HOH HOH . H 4 HOH B 56 2056 2056 HOH HOH . H 4 HOH B 57 2057 2057 HOH HOH . H 4 HOH B 58 2058 2058 HOH HOH . H 4 HOH B 59 2059 2059 HOH HOH . H 4 HOH B 60 2060 2060 HOH HOH . H 4 HOH B 61 2061 2061 HOH HOH . H 4 HOH B 62 2062 2062 HOH HOH . H 4 HOH B 63 2063 2063 HOH HOH . H 4 HOH B 64 2064 2064 HOH HOH . H 4 HOH B 65 2065 2065 HOH HOH . H 4 HOH B 66 2066 2066 HOH HOH . H 4 HOH B 67 2067 2067 HOH HOH . H 4 HOH B 68 2068 2068 HOH HOH . H 4 HOH B 69 2069 2069 HOH HOH . H 4 HOH B 70 2070 2070 HOH HOH . H 4 HOH B 71 2071 2071 HOH HOH . H 4 HOH B 72 2072 2072 HOH HOH . H 4 HOH B 73 2073 2073 HOH HOH . H 4 HOH B 74 2074 2074 HOH HOH . H 4 HOH B 75 2075 2075 HOH HOH . H 4 HOH B 76 2076 2076 HOH HOH . H 4 HOH B 77 2077 2077 HOH HOH . H 4 HOH B 78 2078 2078 HOH HOH . H 4 HOH B 79 2079 2079 HOH HOH . H 4 HOH B 80 2080 2080 HOH HOH . H 4 HOH B 81 2081 2081 HOH HOH . H 4 HOH B 82 2082 2082 HOH HOH . H 4 HOH B 83 2083 2083 HOH HOH . H 4 HOH B 84 2084 2084 HOH HOH . H 4 HOH B 85 2085 2085 HOH HOH . H 4 HOH B 86 2086 2086 HOH HOH . H 4 HOH B 87 2087 2087 HOH HOH . H 4 HOH B 88 2088 2088 HOH HOH . H 4 HOH B 89 2089 2089 HOH HOH . H 4 HOH B 90 2090 2090 HOH HOH . H 4 HOH B 91 2091 2091 HOH HOH . H 4 HOH B 92 2092 2092 HOH HOH . H 4 HOH B 93 2093 2093 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J47 . . . D 3 -26.57 27.497 -8.089 1 35.63 ? N1 J47 1259 A 1 HETATM 2 C C1 J47 . . . D 3 -27.615 27.629 -7.657 1 36.96 ? C1 J47 1259 A 1 HETATM 3 C C2 J47 . . . D 3 -28.93 27.844 -7.111 1 38.34 ? C2 J47 1259 A 1 HETATM 4 C C3 J47 . . . D 3 -29.148 28.976 -6.337 1 37.13 ? C3 J47 1259 A 1 HETATM 5 C C4 J47 . . . D 3 -30.401 29.21 -5.819 1 47.43 ? C4 J47 1259 A 1 HETATM 6 BR BR1 J47 . . . D 3 -30.595 30.618 -4.55 1 57.93 ? BR1 J47 1259 A 1 HETATM 7 C C5 J47 . . . D 3 -31.461 28.356 -6.059 1 35.65 ? C5 J47 1259 A 1 HETATM 8 C C6 J47 . . . D 3 -31.243 27.201 -6.794 1 36.99 ? C6 J47 1259 A 1 HETATM 9 C C7 J47 . . . D 3 -29.983 26.944 -7.329 1 34.58 ? C7 J47 1259 A 1 HETATM 10 O O1 J47 . . . D 3 -29.636 25.793 -7.962 1 35.99 ? O1 J47 1259 A 1 HETATM 11 C C8 J47 . . . D 3 -30.584 24.834 -8.131 1 35.07 ? C8 J47 1259 A 1 HETATM 12 C C9 J47 . . . D 3 -30.688 23.751 -7.28 1 38.13 ? C9 J47 1259 A 1 HETATM 13 C C10 J47 . . . D 3 -31.453 24.973 -9.223 1 36.17 ? C10 J47 1259 A 1 HETATM 14 O O2 J47 . . . D 3 -31.39 26.056 -10.056 1 30.37 ? O2 J47 1259 A 1 HETATM 15 C C11 J47 . . . D 3 -32.393 23.995 -9.472 1 31.79 ? C11 J47 1259 A 1 HETATM 16 C C12 J47 . . . D 3 -32.487 22.936 -8.599 1 39 ? C12 J47 1259 A 1 HETATM 17 CL CL1 J47 . . . D 3 -33.726 21.765 -8.848 1 38.04 ? CL1 J47 1259 A 1 HETATM 18 C C13 J47 . . . D 3 -31.65 22.795 -7.517 1 39.28 ? C13 J47 1259 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #