data_4D47
#
_model_server_result.job_id            '_icYAOsGJaYnE_Z-5xI_bw' 
_model_server_result.datetime_utc      '2024-11-05 00:16:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d47 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1416}' 
#
_entry.id    4D47 
#
_exptl.entry_id    4D47 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4D47 
_cell.length_a            155.589 
_cell.length_b            178.736 
_cell.length_c            158.806 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D47 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,Y 1 1 
B,K,L,Z 2 1 
C,M,N,AA 3 1 
D,O,P,BA 4 1 
E,Q,R,CA 5 1 
F,S,T,DA 6 1 
G,U,V,EA 7 1 
H,W,X,FA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                GLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-glucose;D-glucose;glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GLC sing 107 n n 
C1 O1 GLC sing 108 n n 
C1 O5 GLC sing 109 n n 
C1 H1 GLC sing 110 n n 
C2 C3 GLC sing 111 n n 
C2 O2 GLC sing 112 n n 
C2 H2 GLC sing 113 n n 
C3 C4 GLC sing 114 n n 
C3 O3 GLC sing 115 n n 
C3 H3 GLC sing 116 n n 
C4 C5 GLC sing 117 n n 
C4 O4 GLC sing 118 n n 
C4 H4 GLC sing 119 n n 
C5 C6 GLC sing 120 n n 
C5 O5 GLC sing 121 n n 
C5 H5 GLC sing 122 n n 
C6 O6 GLC sing 123 n n 
C6 H61 GLC sing 124 n n 
C6 H62 GLC sing 125 n n 
O1 HO1 GLC sing 126 n n 
O2 HO2 GLC sing 127 n n 
O3 HO3 GLC sing 128 n n 
O4 HO4 GLC sing 129 n n 
O6 HO6 GLC sing 130 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GLC a-D-glucopyranose 'COMMON NAME' GMML 1 
GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4D47 
_atom_sites.fract_transf_matrix[1][1]    0.006427 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005595 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006297 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FRU A 1 1415 1415 FRU FRU . 
J 3 GLC A 1 1416 1416 GLC GLC . 
K 2 FRU B 1 1415 1415 FRU FRU . 
L 3 GLC B 1 1416 1416 GLC GLC . 
M 2 FRU C 1 1415 1415 FRU FRU . 
N 3 GLC C 1 1416 1416 GLC GLC . 
O 2 FRU D 1 1415 1415 FRU FRU . 
P 3 GLC D 1 1416 1416 GLC GLC . 
Q 2 FRU E 1 1415 1415 FRU FRU . 
R 3 GLC E 1 1416 1416 GLC GLC . 
S 2 FRU F 1 1415 1415 FRU FRU . 
T 3 GLC F 1 1416 1416 GLC GLC . 
U 2 FRU G 1 1415 1415 FRU FRU . 
V 3 GLC G 1 1416 1416 GLC GLC . 
W 2 FRU H 1 1415 1415 FRU FRU . 
X 3 GLC H 1 1416 1416 GLC GLC . 
Y 4 HOH A 1 2001 2001 HOH HOH . 
Y 4 HOH A 2 2002 2002 HOH HOH . 
Y 4 HOH A 3 2003 2003 HOH HOH . 
Y 4 HOH A 4 2004 2004 HOH HOH . 
Y 4 HOH A 5 2005 2005 HOH HOH . 
Y 4 HOH A 6 2006 2006 HOH HOH . 
Y 4 HOH A 7 2007 2007 HOH HOH . 
Y 4 HOH A 8 2008 2008 HOH HOH . 
Y 4 HOH A 9 2009 2009 HOH HOH . 
Y 4 HOH A 10 2010 2010 HOH HOH . 
Y 4 HOH A 11 2011 2011 HOH HOH . 
Y 4 HOH A 12 2012 2012 HOH HOH . 
Y 4 HOH A 13 2013 2013 HOH HOH . 
Y 4 HOH A 14 2014 2014 HOH HOH . 
Y 4 HOH A 15 2015 2015 HOH HOH . 
Y 4 HOH A 16 2016 2016 HOH HOH . 
Y 4 HOH A 17 2017 2017 HOH HOH . 
Y 4 HOH A 18 2018 2018 HOH HOH . 
Y 4 HOH A 19 2019 2019 HOH HOH . 
Y 4 HOH A 20 2020 2020 HOH HOH . 
Y 4 HOH A 21 2021 2021 HOH HOH . 
Y 4 HOH A 22 2022 2022 HOH HOH . 
Y 4 HOH A 23 2023 2023 HOH HOH . 
Y 4 HOH A 24 2024 2024 HOH HOH . 
Y 4 HOH A 25 2025 2025 HOH HOH . 
Z 4 HOH B 1 2001 2001 HOH HOH . 
Z 4 HOH B 2 2002 2002 HOH HOH . 
Z 4 HOH B 3 2003 2003 HOH HOH . 
Z 4 HOH B 4 2004 2004 HOH HOH . 
AA 4 HOH C 1 2001 2001 HOH HOH . 
AA 4 HOH C 2 2002 2002 HOH HOH . 
AA 4 HOH C 3 2003 2003 HOH HOH . 
AA 4 HOH C 4 2004 2004 HOH HOH . 
AA 4 HOH C 5 2005 2005 HOH HOH . 
AA 4 HOH C 6 2006 2006 HOH HOH . 
AA 4 HOH C 7 2007 2007 HOH HOH . 
AA 4 HOH C 8 2008 2008 HOH HOH . 
AA 4 HOH C 9 2009 2009 HOH HOH . 
AA 4 HOH C 10 2010 2010 HOH HOH . 
AA 4 HOH C 11 2011 2011 HOH HOH . 
BA 4 HOH D 1 2001 2001 HOH HOH . 
BA 4 HOH D 2 2002 2002 HOH HOH . 
BA 4 HOH D 3 2003 2003 HOH HOH . 
BA 4 HOH D 4 2004 2004 HOH HOH . 
BA 4 HOH D 5 2005 2005 HOH HOH . 
BA 4 HOH D 6 2006 2006 HOH HOH . 
BA 4 HOH D 7 2007 2007 HOH HOH . 
BA 4 HOH D 8 2008 2008 HOH HOH . 
CA 4 HOH E 1 2001 2001 HOH HOH . 
CA 4 HOH E 2 2002 2002 HOH HOH . 
CA 4 HOH E 3 2003 2003 HOH HOH . 
CA 4 HOH E 4 2004 2004 HOH HOH . 
CA 4 HOH E 5 2005 2005 HOH HOH . 
CA 4 HOH E 6 2006 2006 HOH HOH . 
CA 4 HOH E 7 2007 2007 HOH HOH . 
CA 4 HOH E 8 2008 2008 HOH HOH . 
CA 4 HOH E 9 2009 2009 HOH HOH . 
CA 4 HOH E 10 2010 2010 HOH HOH . 
CA 4 HOH E 11 2011 2011 HOH HOH . 
CA 4 HOH E 12 2012 2012 HOH HOH . 
DA 4 HOH F 1 2001 2001 HOH HOH . 
DA 4 HOH F 2 2002 2002 HOH HOH . 
DA 4 HOH F 3 2003 2003 HOH HOH . 
DA 4 HOH F 4 2004 2004 HOH HOH . 
DA 4 HOH F 5 2005 2005 HOH HOH . 
DA 4 HOH F 6 2006 2006 HOH HOH . 
DA 4 HOH F 7 2007 2007 HOH HOH . 
DA 4 HOH F 8 2008 2008 HOH HOH . 
DA 4 HOH F 9 2009 2009 HOH HOH . 
DA 4 HOH F 10 2010 2010 HOH HOH . 
DA 4 HOH F 11 2011 2011 HOH HOH . 
DA 4 HOH F 12 2012 2012 HOH HOH . 
DA 4 HOH F 13 2013 2013 HOH HOH . 
DA 4 HOH F 14 2014 2014 HOH HOH . 
DA 4 HOH F 15 2015 2015 HOH HOH . 
DA 4 HOH F 16 2016 2016 HOH HOH . 
EA 4 HOH G 1 2001 2001 HOH HOH . 
EA 4 HOH G 2 2002 2002 HOH HOH . 
EA 4 HOH G 3 2003 2003 HOH HOH . 
EA 4 HOH G 4 2004 2004 HOH HOH . 
EA 4 HOH G 5 2005 2005 HOH HOH . 
EA 4 HOH G 6 2006 2006 HOH HOH . 
FA 4 HOH H 1 2001 2001 HOH HOH . 
FA 4 HOH H 2 2002 2002 HOH HOH . 
FA 4 HOH H 3 2003 2003 HOH HOH . 
FA 4 HOH H 4 2004 2004 HOH HOH . 
FA 4 HOH H 5 2005 2005 HOH HOH . 
FA 4 HOH H 6 2006 2006 HOH HOH . 
FA 4 HOH H 7 2007 2007 HOH HOH . 
FA 4 HOH H 8 2008 2008 HOH HOH . 
FA 4 HOH H 9 2009 2009 HOH HOH . 
FA 4 HOH H 10 2010 2010 HOH HOH . 
FA 4 HOH H 11 2011 2011 HOH HOH . 
FA 4 HOH H 12 2012 2012 HOH HOH . 
FA 4 HOH H 13 2013 2013 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GLC . . . T 3 136.939 78.209 49.172 1 48.4 ? C1 GLC 1416 F 1 
HETATM 2 C C2 GLC . . . T 3 137.4 76.976 48.399 1 66.3 ? C2 GLC 1416 F 1 
HETATM 3 C C3 GLC . . . T 3 138.739 77.215 47.71 1 71.21 ? C3 GLC 1416 F 1 
HETATM 4 C C4 GLC . . . T 3 138.654 78.483 46.871 1 62.15 ? C4 GLC 1416 F 1 
HETATM 5 C C5 GLC . . . T 3 138.257 79.636 47.773 1 45.04 ? C5 GLC 1416 F 1 
HETATM 6 C C6 GLC . . . T 3 138.256 80.942 46.987 1 55.75 ? C6 GLC 1416 F 1 
HETATM 7 O O1 GLC . . . T 3 137.776 78.398 50.318 1 47.83 ? O1 GLC 1416 F 1 
HETATM 8 O O2 GLC . . . T 3 137.505 75.859 49.29 1 80.1 ? O2 GLC 1416 F 1 
HETATM 9 O O3 GLC . . . T 3 139.061 76.083 46.899 1 78.45 ? O3 GLC 1416 F 1 
HETATM 10 O O4 GLC . . . T 3 139.903 78.803 46.248 1 52.68 ? O4 GLC 1416 F 1 
HETATM 11 O O5 GLC . . . T 3 136.971 79.367 48.333 1 45.18 ? O5 GLC 1416 F 1 
HETATM 12 O O6 GLC . . . T 3 139.46 81.664 47.273 1 65.57 ? O6 GLC 1416 F 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           12 
#