data_4D47 # _model_server_result.job_id cZwHTn8dedVnqyuWaRLcHA _model_server_result.datetime_utc '2024-11-05 00:22:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1416}' # _entry.id 4D47 # _exptl.entry_id 4D47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D47 _cell.length_a 155.589 _cell.length_b 178.736 _cell.length_c 158.806 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,Y 1 1 B,K,L,Z 2 1 C,M,N,AA 3 1 D,O,P,BA 4 1 E,Q,R,CA 5 1 F,S,T,DA 6 1 G,U,V,EA 7 1 H,W,X,FA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 107 n n C1 O1 GLC sing 108 n n C1 O5 GLC sing 109 n n C1 H1 GLC sing 110 n n C2 C3 GLC sing 111 n n C2 O2 GLC sing 112 n n C2 H2 GLC sing 113 n n C3 C4 GLC sing 114 n n C3 O3 GLC sing 115 n n C3 H3 GLC sing 116 n n C4 C5 GLC sing 117 n n C4 O4 GLC sing 118 n n C4 H4 GLC sing 119 n n C5 C6 GLC sing 120 n n C5 O5 GLC sing 121 n n C5 H5 GLC sing 122 n n C6 O6 GLC sing 123 n n C6 H61 GLC sing 124 n n C6 H62 GLC sing 125 n n O1 HO1 GLC sing 126 n n O2 HO2 GLC sing 127 n n O3 HO3 GLC sing 128 n n O4 HO4 GLC sing 129 n n O6 HO6 GLC sing 130 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4D47 _atom_sites.fract_transf_matrix[1][1] 0.006427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 FRU A 1 1415 1415 FRU FRU . J 3 GLC A 1 1416 1416 GLC GLC . K 2 FRU B 1 1415 1415 FRU FRU . L 3 GLC B 1 1416 1416 GLC GLC . M 2 FRU C 1 1415 1415 FRU FRU . N 3 GLC C 1 1416 1416 GLC GLC . O 2 FRU D 1 1415 1415 FRU FRU . P 3 GLC D 1 1416 1416 GLC GLC . Q 2 FRU E 1 1415 1415 FRU FRU . R 3 GLC E 1 1416 1416 GLC GLC . S 2 FRU F 1 1415 1415 FRU FRU . T 3 GLC F 1 1416 1416 GLC GLC . U 2 FRU G 1 1415 1415 FRU FRU . V 3 GLC G 1 1416 1416 GLC GLC . W 2 FRU H 1 1415 1415 FRU FRU . X 3 GLC H 1 1416 1416 GLC GLC . Y 4 HOH A 1 2001 2001 HOH HOH . Y 4 HOH A 2 2002 2002 HOH HOH . Y 4 HOH A 3 2003 2003 HOH HOH . Y 4 HOH A 4 2004 2004 HOH HOH . Y 4 HOH A 5 2005 2005 HOH HOH . Y 4 HOH A 6 2006 2006 HOH HOH . Y 4 HOH A 7 2007 2007 HOH HOH . Y 4 HOH A 8 2008 2008 HOH HOH . Y 4 HOH A 9 2009 2009 HOH HOH . Y 4 HOH A 10 2010 2010 HOH HOH . Y 4 HOH A 11 2011 2011 HOH HOH . Y 4 HOH A 12 2012 2012 HOH HOH . Y 4 HOH A 13 2013 2013 HOH HOH . Y 4 HOH A 14 2014 2014 HOH HOH . Y 4 HOH A 15 2015 2015 HOH HOH . Y 4 HOH A 16 2016 2016 HOH HOH . Y 4 HOH A 17 2017 2017 HOH HOH . Y 4 HOH A 18 2018 2018 HOH HOH . Y 4 HOH A 19 2019 2019 HOH HOH . Y 4 HOH A 20 2020 2020 HOH HOH . Y 4 HOH A 21 2021 2021 HOH HOH . Y 4 HOH A 22 2022 2022 HOH HOH . Y 4 HOH A 23 2023 2023 HOH HOH . Y 4 HOH A 24 2024 2024 HOH HOH . Y 4 HOH A 25 2025 2025 HOH HOH . Z 4 HOH B 1 2001 2001 HOH HOH . Z 4 HOH B 2 2002 2002 HOH HOH . Z 4 HOH B 3 2003 2003 HOH HOH . Z 4 HOH B 4 2004 2004 HOH HOH . AA 4 HOH C 1 2001 2001 HOH HOH . AA 4 HOH C 2 2002 2002 HOH HOH . AA 4 HOH C 3 2003 2003 HOH HOH . AA 4 HOH C 4 2004 2004 HOH HOH . AA 4 HOH C 5 2005 2005 HOH HOH . AA 4 HOH C 6 2006 2006 HOH HOH . AA 4 HOH C 7 2007 2007 HOH HOH . AA 4 HOH C 8 2008 2008 HOH HOH . AA 4 HOH C 9 2009 2009 HOH HOH . AA 4 HOH C 10 2010 2010 HOH HOH . AA 4 HOH C 11 2011 2011 HOH HOH . BA 4 HOH D 1 2001 2001 HOH HOH . BA 4 HOH D 2 2002 2002 HOH HOH . BA 4 HOH D 3 2003 2003 HOH HOH . BA 4 HOH D 4 2004 2004 HOH HOH . BA 4 HOH D 5 2005 2005 HOH HOH . BA 4 HOH D 6 2006 2006 HOH HOH . BA 4 HOH D 7 2007 2007 HOH HOH . BA 4 HOH D 8 2008 2008 HOH HOH . CA 4 HOH E 1 2001 2001 HOH HOH . CA 4 HOH E 2 2002 2002 HOH HOH . CA 4 HOH E 3 2003 2003 HOH HOH . CA 4 HOH E 4 2004 2004 HOH HOH . CA 4 HOH E 5 2005 2005 HOH HOH . CA 4 HOH E 6 2006 2006 HOH HOH . CA 4 HOH E 7 2007 2007 HOH HOH . CA 4 HOH E 8 2008 2008 HOH HOH . CA 4 HOH E 9 2009 2009 HOH HOH . CA 4 HOH E 10 2010 2010 HOH HOH . CA 4 HOH E 11 2011 2011 HOH HOH . CA 4 HOH E 12 2012 2012 HOH HOH . DA 4 HOH F 1 2001 2001 HOH HOH . DA 4 HOH F 2 2002 2002 HOH HOH . DA 4 HOH F 3 2003 2003 HOH HOH . DA 4 HOH F 4 2004 2004 HOH HOH . DA 4 HOH F 5 2005 2005 HOH HOH . DA 4 HOH F 6 2006 2006 HOH HOH . DA 4 HOH F 7 2007 2007 HOH HOH . DA 4 HOH F 8 2008 2008 HOH HOH . DA 4 HOH F 9 2009 2009 HOH HOH . DA 4 HOH F 10 2010 2010 HOH HOH . DA 4 HOH F 11 2011 2011 HOH HOH . DA 4 HOH F 12 2012 2012 HOH HOH . DA 4 HOH F 13 2013 2013 HOH HOH . DA 4 HOH F 14 2014 2014 HOH HOH . DA 4 HOH F 15 2015 2015 HOH HOH . DA 4 HOH F 16 2016 2016 HOH HOH . EA 4 HOH G 1 2001 2001 HOH HOH . EA 4 HOH G 2 2002 2002 HOH HOH . EA 4 HOH G 3 2003 2003 HOH HOH . EA 4 HOH G 4 2004 2004 HOH HOH . EA 4 HOH G 5 2005 2005 HOH HOH . EA 4 HOH G 6 2006 2006 HOH HOH . FA 4 HOH H 1 2001 2001 HOH HOH . FA 4 HOH H 2 2002 2002 HOH HOH . FA 4 HOH H 3 2003 2003 HOH HOH . FA 4 HOH H 4 2004 2004 HOH HOH . FA 4 HOH H 5 2005 2005 HOH HOH . FA 4 HOH H 6 2006 2006 HOH HOH . FA 4 HOH H 7 2007 2007 HOH HOH . FA 4 HOH H 8 2008 2008 HOH HOH . FA 4 HOH H 9 2009 2009 HOH HOH . FA 4 HOH H 10 2010 2010 HOH HOH . FA 4 HOH H 11 2011 2011 HOH HOH . FA 4 HOH H 12 2012 2012 HOH HOH . FA 4 HOH H 13 2013 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . X 3 155.613 18.402 15.758 1 65.34 ? C1 GLC 1416 H 1 HETATM 2 C C2 GLC . . . X 3 156.767 19.393 15.783 1 48.56 ? C2 GLC 1416 H 1 HETATM 3 C C3 GLC . . . X 3 156.215 20.804 15.908 1 47.6 ? C3 GLC 1416 H 1 HETATM 4 C C4 GLC . . . X 3 155.318 21.046 14.709 1 46.26 ? C4 GLC 1416 H 1 HETATM 5 C C5 GLC . . . X 3 154.169 20.063 14.822 1 45.04 ? C5 GLC 1416 H 1 HETATM 6 C C6 GLC . . . X 3 153.116 20.35 13.758 1 47.93 ? C6 GLC 1416 H 1 HETATM 7 O O1 GLC . . . X 3 154.958 18.435 17.031 1 83.59 ? O1 GLC 1416 H 1 HETATM 8 O O2 GLC . . . X 3 157.632 19.084 16.879 1 63.06 ? O2 GLC 1416 H 1 HETATM 9 O O3 GLC . . . X 3 157.259 21.768 15.961 1 76.62 ? O3 GLC 1416 H 1 HETATM 10 O O4 GLC . . . X 3 154.821 22.387 14.665 1 44.04 ? O4 GLC 1416 H 1 HETATM 11 O O5 GLC . . . X 3 154.686 18.734 14.716 1 47.7 ? O5 GLC 1416 H 1 HETATM 12 O O6 GLC . . . X 3 152.108 21.194 14.325 1 68.97 ? O6 GLC 1416 H 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #