data_4D49
#
_model_server_result.job_id            VlNDyR8LU6NJpsRlqCSadQ 
_model_server_result.datetime_utc      '2024-10-18 18:15:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d49 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1011}' 
#
_entry.id    4D49 
#
_exptl.entry_id    4D49 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ARGININE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.16 
_cell.angle_gamma         90 
_cell.entry_id            4D49 
_cell.length_a            88.57 
_cell.length_b            51.73 
_cell.length_c            107.61 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D49 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 author_and_software_defined_assembly 1 
PQS tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,K,L,M,N 1 1 
E,F,G,H,J,O,P,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                ARG 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ARGININE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ARG sing 13 n n 
N H ARG sing 14 n n 
N H2 ARG sing 15 n n 
CA C ARG sing 16 n n 
CA CB ARG sing 17 n n 
CA HA ARG sing 18 n n 
C O ARG doub 19 n n 
C OXT ARG sing 20 n n 
CB CG ARG sing 21 n n 
CB HB2 ARG sing 22 n n 
CB HB3 ARG sing 23 n n 
CG CD ARG sing 24 n n 
CG HG2 ARG sing 25 n n 
CG HG3 ARG sing 26 n n 
CD NE ARG sing 27 n n 
CD HD2 ARG sing 28 n n 
CD HD3 ARG sing 29 n n 
NE CZ ARG sing 30 n n 
NE HE ARG sing 31 n n 
CZ NH1 ARG sing 32 n n 
CZ NH2 ARG doub 33 n n 
NH1 HH11 ARG sing 34 n n 
NH1 HH12 ARG sing 35 n n 
NH2 HH21 ARG sing 36 n n 
NH2 HH22 ARG sing 37 n n 
OXT HXT ARG sing 38 n n 
#
_atom_sites.entry_id                     4D49 
_atom_sites.fract_transf_matrix[1][1]    0.011291 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000032 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ARG D 1 1011 1011 ARG ARG . 
J 3 ARG E 1 1011 1011 ARG ARG . 
K 4 HOH A 1 2001 2001 HOH HOH . 
K 4 HOH A 2 2002 2002 HOH HOH . 
K 4 HOH A 3 2003 2003 HOH HOH . 
K 4 HOH A 4 2004 2004 HOH HOH . 
K 4 HOH A 5 2005 2005 HOH HOH . 
K 4 HOH A 6 2006 2006 HOH HOH . 
K 4 HOH A 7 2007 2007 HOH HOH . 
K 4 HOH A 8 2008 2008 HOH HOH . 
K 4 HOH A 9 2009 2009 HOH HOH . 
K 4 HOH A 10 2010 2010 HOH HOH . 
K 4 HOH A 11 2011 2011 HOH HOH . 
K 4 HOH A 12 2012 2012 HOH HOH . 
K 4 HOH A 13 2013 2013 HOH HOH . 
K 4 HOH A 14 2014 2014 HOH HOH . 
K 4 HOH A 15 2015 2015 HOH HOH . 
K 4 HOH A 16 2016 2016 HOH HOH . 
K 4 HOH A 17 2017 2017 HOH HOH . 
K 4 HOH A 18 2018 2018 HOH HOH . 
K 4 HOH A 19 2019 2019 HOH HOH . 
K 4 HOH A 20 2020 2020 HOH HOH . 
K 4 HOH A 21 2021 2021 HOH HOH . 
K 4 HOH A 22 2022 2022 HOH HOH . 
K 4 HOH A 23 2023 2023 HOH HOH . 
K 4 HOH A 24 2024 2024 HOH HOH . 
K 4 HOH A 25 2025 2025 HOH HOH . 
K 4 HOH A 26 2026 2026 HOH HOH . 
K 4 HOH A 27 2027 2027 HOH HOH . 
K 4 HOH A 28 2028 2028 HOH HOH . 
K 4 HOH A 29 2029 2029 HOH HOH . 
K 4 HOH A 30 2030 2030 HOH HOH . 
K 4 HOH A 31 2031 2031 HOH HOH . 
K 4 HOH A 32 2032 2032 HOH HOH . 
K 4 HOH A 33 2033 2033 HOH HOH . 
K 4 HOH A 34 2034 2034 HOH HOH . 
K 4 HOH A 35 2035 2035 HOH HOH . 
K 4 HOH A 36 2036 2036 HOH HOH . 
K 4 HOH A 37 2037 2037 HOH HOH . 
K 4 HOH A 38 2038 2038 HOH HOH . 
K 4 HOH A 39 2039 2039 HOH HOH . 
K 4 HOH A 40 2040 2040 HOH HOH . 
K 4 HOH A 41 2041 2041 HOH HOH . 
K 4 HOH A 42 2042 2042 HOH HOH . 
K 4 HOH A 43 2043 2043 HOH HOH . 
K 4 HOH A 44 2044 2044 HOH HOH . 
K 4 HOH A 45 2045 2045 HOH HOH . 
K 4 HOH A 46 2046 2046 HOH HOH . 
K 4 HOH A 47 2047 2047 HOH HOH . 
K 4 HOH A 48 2048 2048 HOH HOH . 
K 4 HOH A 49 2049 2049 HOH HOH . 
K 4 HOH A 50 2050 2050 HOH HOH . 
L 4 HOH B 1 2001 2001 HOH HOH . 
L 4 HOH B 2 2002 2002 HOH HOH . 
L 4 HOH B 3 2003 2003 HOH HOH . 
L 4 HOH B 4 2004 2004 HOH HOH . 
L 4 HOH B 5 2005 2005 HOH HOH . 
L 4 HOH B 6 2006 2006 HOH HOH . 
L 4 HOH B 7 2007 2007 HOH HOH . 
L 4 HOH B 8 2008 2008 HOH HOH . 
L 4 HOH B 9 2009 2009 HOH HOH . 
L 4 HOH B 10 2010 2010 HOH HOH . 
L 4 HOH B 11 2011 2011 HOH HOH . 
L 4 HOH B 12 2012 2012 HOH HOH . 
L 4 HOH B 13 2013 2013 HOH HOH . 
L 4 HOH B 14 2014 2014 HOH HOH . 
L 4 HOH B 15 2015 2015 HOH HOH . 
L 4 HOH B 16 2016 2016 HOH HOH . 
L 4 HOH B 17 2017 2017 HOH HOH . 
L 4 HOH B 18 2018 2018 HOH HOH . 
L 4 HOH B 19 2019 2019 HOH HOH . 
L 4 HOH B 20 2020 2020 HOH HOH . 
L 4 HOH B 21 2021 2021 HOH HOH . 
L 4 HOH B 22 2022 2022 HOH HOH . 
L 4 HOH B 23 2023 2023 HOH HOH . 
L 4 HOH B 24 2024 2024 HOH HOH . 
L 4 HOH B 25 2025 2025 HOH HOH . 
L 4 HOH B 26 2026 2026 HOH HOH . 
L 4 HOH B 27 2027 2027 HOH HOH . 
L 4 HOH B 28 2028 2028 HOH HOH . 
L 4 HOH B 29 2029 2029 HOH HOH . 
L 4 HOH B 30 2030 2030 HOH HOH . 
L 4 HOH B 31 2031 2031 HOH HOH . 
L 4 HOH B 32 2032 2032 HOH HOH . 
L 4 HOH B 33 2033 2033 HOH HOH . 
L 4 HOH B 34 2034 2034 HOH HOH . 
L 4 HOH B 35 2035 2035 HOH HOH . 
L 4 HOH B 36 2036 2036 HOH HOH . 
L 4 HOH B 37 2037 2037 HOH HOH . 
L 4 HOH B 38 2038 2038 HOH HOH . 
L 4 HOH B 39 2039 2039 HOH HOH . 
L 4 HOH B 40 2040 2040 HOH HOH . 
L 4 HOH B 41 2041 2041 HOH HOH . 
L 4 HOH B 42 2042 2042 HOH HOH . 
L 4 HOH B 43 2043 2043 HOH HOH . 
L 4 HOH B 44 2044 2044 HOH HOH . 
L 4 HOH B 45 2045 2045 HOH HOH . 
L 4 HOH B 46 2046 2046 HOH HOH . 
L 4 HOH B 47 2047 2047 HOH HOH . 
L 4 HOH B 48 2048 2048 HOH HOH . 
L 4 HOH B 49 2049 2049 HOH HOH . 
L 4 HOH B 50 2050 2050 HOH HOH . 
L 4 HOH B 51 2051 2051 HOH HOH . 
L 4 HOH B 52 2052 2052 HOH HOH . 
L 4 HOH B 53 2053 2053 HOH HOH . 
M 4 HOH C 1 2001 2001 HOH HOH . 
M 4 HOH C 2 2002 2002 HOH HOH . 
M 4 HOH C 3 2003 2003 HOH HOH . 
N 4 HOH D 1 2001 2001 HOH HOH . 
N 4 HOH D 2 2002 2002 HOH HOH . 
N 4 HOH D 3 2003 2003 HOH HOH . 
O 4 HOH E 1 2001 2001 HOH HOH . 
O 4 HOH E 2 2002 2002 HOH HOH . 
O 4 HOH E 3 2003 2003 HOH HOH . 
O 4 HOH E 4 2004 2004 HOH HOH . 
O 4 HOH E 5 2005 2005 HOH HOH . 
O 4 HOH E 6 2006 2006 HOH HOH . 
O 4 HOH E 7 2007 2007 HOH HOH . 
O 4 HOH E 8 2008 2008 HOH HOH . 
O 4 HOH E 9 2009 2009 HOH HOH . 
O 4 HOH E 10 2010 2010 HOH HOH . 
O 4 HOH E 11 2011 2011 HOH HOH . 
O 4 HOH E 12 2012 2012 HOH HOH . 
O 4 HOH E 13 2013 2013 HOH HOH . 
O 4 HOH E 14 2014 2014 HOH HOH . 
O 4 HOH E 15 2015 2015 HOH HOH . 
O 4 HOH E 16 2016 2016 HOH HOH . 
O 4 HOH E 17 2017 2017 HOH HOH . 
O 4 HOH E 18 2018 2018 HOH HOH . 
O 4 HOH E 19 2019 2019 HOH HOH . 
O 4 HOH E 20 2020 2020 HOH HOH . 
O 4 HOH E 21 2021 2021 HOH HOH . 
O 4 HOH E 22 2022 2022 HOH HOH . 
O 4 HOH E 23 2023 2023 HOH HOH . 
O 4 HOH E 24 2024 2024 HOH HOH . 
O 4 HOH E 25 2025 2025 HOH HOH . 
O 4 HOH E 26 2026 2026 HOH HOH . 
O 4 HOH E 27 2027 2027 HOH HOH . 
O 4 HOH E 28 2028 2028 HOH HOH . 
O 4 HOH E 29 2029 2029 HOH HOH . 
O 4 HOH E 30 2030 2030 HOH HOH . 
O 4 HOH E 31 2031 2031 HOH HOH . 
O 4 HOH E 32 2032 2032 HOH HOH . 
O 4 HOH E 33 2033 2033 HOH HOH . 
O 4 HOH E 34 2034 2034 HOH HOH . 
O 4 HOH E 35 2035 2035 HOH HOH . 
O 4 HOH E 36 2036 2036 HOH HOH . 
O 4 HOH E 37 2037 2037 HOH HOH . 
O 4 HOH E 38 2038 2038 HOH HOH . 
O 4 HOH E 39 2039 2039 HOH HOH . 
O 4 HOH E 40 2040 2040 HOH HOH . 
O 4 HOH E 41 2041 2041 HOH HOH . 
O 4 HOH E 42 2042 2042 HOH HOH . 
O 4 HOH E 43 2043 2043 HOH HOH . 
O 4 HOH E 44 2044 2044 HOH HOH . 
O 4 HOH E 45 2045 2045 HOH HOH . 
O 4 HOH E 46 2046 2046 HOH HOH . 
O 4 HOH E 47 2047 2047 HOH HOH . 
O 4 HOH E 48 2048 2048 HOH HOH . 
O 4 HOH E 49 2049 2049 HOH HOH . 
O 4 HOH E 50 2050 2050 HOH HOH . 
O 4 HOH E 51 2051 2051 HOH HOH . 
O 4 HOH E 52 2052 2052 HOH HOH . 
O 4 HOH E 53 2053 2053 HOH HOH . 
O 4 HOH E 54 2054 2054 HOH HOH . 
O 4 HOH E 55 2055 2055 HOH HOH . 
O 4 HOH E 56 2056 2056 HOH HOH . 
O 4 HOH E 57 2057 2057 HOH HOH . 
O 4 HOH E 58 2058 2058 HOH HOH . 
O 4 HOH E 59 2059 2059 HOH HOH . 
O 4 HOH E 60 2060 2060 HOH HOH . 
O 4 HOH E 61 2061 2061 HOH HOH . 
O 4 HOH E 62 2062 2062 HOH HOH . 
O 4 HOH E 63 2063 2063 HOH HOH . 
O 4 HOH E 64 2064 2064 HOH HOH . 
O 4 HOH E 65 2065 2065 HOH HOH . 
O 4 HOH E 66 2066 2066 HOH HOH . 
O 4 HOH E 67 2067 2067 HOH HOH . 
O 4 HOH E 68 2068 2068 HOH HOH . 
O 4 HOH E 69 2069 2069 HOH HOH . 
O 4 HOH E 70 2070 2070 HOH HOH . 
P 4 HOH F 1 2001 2001 HOH HOH . 
P 4 HOH F 2 2002 2002 HOH HOH . 
P 4 HOH F 3 2003 2003 HOH HOH . 
P 4 HOH F 4 2004 2004 HOH HOH . 
P 4 HOH F 5 2005 2005 HOH HOH . 
P 4 HOH F 6 2006 2006 HOH HOH . 
P 4 HOH F 7 2007 2007 HOH HOH . 
P 4 HOH F 8 2008 2008 HOH HOH . 
P 4 HOH F 9 2009 2009 HOH HOH . 
P 4 HOH F 10 2010 2010 HOH HOH . 
P 4 HOH F 11 2011 2011 HOH HOH . 
P 4 HOH F 12 2012 2012 HOH HOH . 
P 4 HOH F 13 2013 2013 HOH HOH . 
P 4 HOH F 14 2014 2014 HOH HOH . 
P 4 HOH F 15 2015 2015 HOH HOH . 
P 4 HOH F 16 2016 2016 HOH HOH . 
P 4 HOH F 17 2017 2017 HOH HOH . 
P 4 HOH F 18 2018 2018 HOH HOH . 
P 4 HOH F 19 2019 2019 HOH HOH . 
P 4 HOH F 20 2020 2020 HOH HOH . 
P 4 HOH F 21 2021 2021 HOH HOH . 
P 4 HOH F 22 2022 2022 HOH HOH . 
P 4 HOH F 23 2023 2023 HOH HOH . 
P 4 HOH F 24 2024 2024 HOH HOH . 
P 4 HOH F 25 2025 2025 HOH HOH . 
P 4 HOH F 26 2026 2026 HOH HOH . 
P 4 HOH F 27 2027 2027 HOH HOH . 
P 4 HOH F 28 2028 2028 HOH HOH . 
P 4 HOH F 29 2029 2029 HOH HOH . 
P 4 HOH F 30 2030 2030 HOH HOH . 
P 4 HOH F 31 2031 2031 HOH HOH . 
P 4 HOH F 32 2032 2032 HOH HOH . 
P 4 HOH F 33 2033 2033 HOH HOH . 
P 4 HOH F 34 2034 2034 HOH HOH . 
P 4 HOH F 35 2035 2035 HOH HOH . 
P 4 HOH F 36 2036 2036 HOH HOH . 
P 4 HOH F 37 2037 2037 HOH HOH . 
P 4 HOH F 38 2038 2038 HOH HOH . 
P 4 HOH F 39 2039 2039 HOH HOH . 
P 4 HOH F 40 2040 2040 HOH HOH . 
P 4 HOH F 41 2041 2041 HOH HOH . 
P 4 HOH F 42 2042 2042 HOH HOH . 
P 4 HOH F 43 2043 2043 HOH HOH . 
P 4 HOH F 44 2044 2044 HOH HOH . 
P 4 HOH F 45 2045 2045 HOH HOH . 
P 4 HOH F 46 2046 2046 HOH HOH . 
P 4 HOH F 47 2047 2047 HOH HOH . 
P 4 HOH F 48 2048 2048 HOH HOH . 
P 4 HOH F 49 2049 2049 HOH HOH . 
P 4 HOH F 50 2050 2050 HOH HOH . 
P 4 HOH F 51 2051 2051 HOH HOH . 
Q 4 HOH G 1 2001 2001 HOH HOH . 
Q 4 HOH G 2 2002 2002 HOH HOH . 
Q 4 HOH G 3 2003 2003 HOH HOH . 
R 4 HOH H 1 2001 2001 HOH HOH . 
R 4 HOH H 2 2002 2002 HOH HOH . 
R 4 HOH H 3 2003 2003 HOH HOH . 
R 4 HOH H 4 2004 2004 HOH HOH . 
R 4 HOH H 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ARG . . . I 3 20.523 -17.968 14.855 1 43.76 ? N ARG 1011 D 1 
HETATM 2 C CA ARG . . . I 3 20.966 -16.591 14.593 1 41.92 ? CA ARG 1011 D 1 
HETATM 3 C C ARG . . . I 3 19.69 -15.871 14.512 1 32.44 ? C ARG 1011 D 1 
HETATM 4 O O ARG . . . I 3 18.955 -16.17 13.603 1 32.19 ? O ARG 1011 D 1 
HETATM 5 C CB ARG . . . I 3 21.726 -16.496 13.252 1 45.28 ? CB ARG 1011 D 1 
HETATM 6 C CG ARG . . . I 3 22.063 -15.073 12.822 1 39.62 ? CG ARG 1011 D 1 
HETATM 7 C CD ARG . . . I 3 22.286 -14.901 11.313 1 43.74 ? CD ARG 1011 D 1 
HETATM 8 N NE ARG . . . I 3 23.482 -14.058 11.062 1 42.33 ? NE ARG 1011 D 1 
HETATM 9 C CZ ARG . . . I 3 23.78 -13.485 9.915 1 35.02 ? CZ ARG 1011 D 1 
HETATM 10 N NH1 ARG . . . I 3 24.886 -12.749 9.797 1 36.15 ? NH1 ARG 1011 D 1 
HETATM 11 N NH2 ARG . . . I 3 22.979 -13.626 8.893 1 32.89 ? NH2 ARG 1011 D 1 
#
_model_server_stats.io_time_ms              135 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           11 
#