data_4D4J # _model_server_result.job_id zMDXrN05421zJrZvzyfZ4A _model_server_result.datetime_utc '2024-11-21 23:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1449}' # _entry.id 4D4J # _exptl.entry_id 4D4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.211 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-bromophenyl)-7-phenyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D4J _cell.length_a 102.43 _cell.length_b 102.43 _cell.length_c 258.63 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -43.105 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H12 Br N3 O' _chem_comp.formula_weight 366.211 _chem_comp.id BKI _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-bromophenyl)-7-phenyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 BKI doub 70 n y C C5 BKI sing 71 n y N C3 BKI sing 72 n n N C6 BKI sing 73 n y N C9 BKI sing 74 n y O C11 BKI doub 75 n n BR C15 BKI sing 76 n n C1 C2 BKI sing 77 n y N1 C9 BKI sing 78 n n N1 C10 BKI doub 79 n n C2 C3 BKI doub 80 n y N2 C10 BKI sing 81 n n N2 C11 BKI sing 82 n n C3 C4 BKI sing 83 n y C4 C5 BKI doub 84 n y C6 C7 BKI doub 85 n y C7 C8 BKI sing 86 n y C7 C12 BKI sing 87 n n C8 C9 BKI doub 88 n y C8 C11 BKI sing 89 n n C12 C13 BKI doub 90 n y C12 C17 BKI sing 91 n y C13 C14 BKI sing 92 n y C14 C15 BKI doub 93 n y C15 C16 BKI sing 94 n y C16 C17 BKI doub 95 n y C H BKI sing 96 n n C1 H1 BKI sing 97 n n C2 H2 BKI sing 98 n n N2 HN2 BKI sing 99 n n C4 H4 BKI sing 100 n n C5 H5 BKI sing 101 n n C6 H6 BKI sing 102 n n C10 H10 BKI sing 103 n n C13 H13 BKI sing 104 n n C14 H14 BKI sing 105 n n C16 H16 BKI sing 106 n n C17 H17 BKI sing 107 n n # _atom_sites.entry_id 4D4J _atom_sites.fract_transf_matrix[1][1] 0.009763 _atom_sites.fract_transf_matrix[1][2] 0.005637 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1446 1446 PO4 PO4 . C 3 PHS A 1 1447 1447 PHS PHS . D 4 F6P A 1 1448 1448 F6P F6P . E 5 BKI A 1 1449 1449 BKI BKI . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . F 6 HOH A 77 2077 2077 HOH HOH . F 6 HOH A 78 2078 2078 HOH HOH . F 6 HOH A 79 2079 2079 HOH HOH . F 6 HOH A 80 2080 2080 HOH HOH . F 6 HOH A 81 2081 2081 HOH HOH . F 6 HOH A 82 2082 2082 HOH HOH . F 6 HOH A 83 2083 2083 HOH HOH . F 6 HOH A 84 2084 2084 HOH HOH . F 6 HOH A 85 2085 2085 HOH HOH . F 6 HOH A 86 2086 2086 HOH HOH . F 6 HOH A 87 2087 2087 HOH HOH . F 6 HOH A 88 2088 2088 HOH HOH . F 6 HOH A 89 2089 2089 HOH HOH . F 6 HOH A 90 2090 2090 HOH HOH . F 6 HOH A 91 2091 2091 HOH HOH . F 6 HOH A 92 2092 2092 HOH HOH . F 6 HOH A 93 2093 2093 HOH HOH . F 6 HOH A 94 2094 2094 HOH HOH . F 6 HOH A 95 2095 2095 HOH HOH . F 6 HOH A 96 2096 2096 HOH HOH . F 6 HOH A 97 2097 2097 HOH HOH . F 6 HOH A 98 2098 2098 HOH HOH . F 6 HOH A 99 2099 2099 HOH HOH . F 6 HOH A 100 2100 2100 HOH HOH . F 6 HOH A 101 2101 2101 HOH HOH . F 6 HOH A 102 2102 2102 HOH HOH . F 6 HOH A 103 2103 2103 HOH HOH . F 6 HOH A 104 2104 2104 HOH HOH . F 6 HOH A 105 2105 2105 HOH HOH . F 6 HOH A 106 2106 2106 HOH HOH . F 6 HOH A 107 2107 2107 HOH HOH . F 6 HOH A 108 2108 2108 HOH HOH . F 6 HOH A 109 2109 2109 HOH HOH . F 6 HOH A 110 2110 2110 HOH HOH . F 6 HOH A 111 2111 2111 HOH HOH . F 6 HOH A 112 2112 2112 HOH HOH . F 6 HOH A 113 2113 2113 HOH HOH . F 6 HOH A 114 2114 2114 HOH HOH . F 6 HOH A 115 2115 2115 HOH HOH . F 6 HOH A 116 2116 2116 HOH HOH . F 6 HOH A 117 2117 2117 HOH HOH . F 6 HOH A 118 2118 2118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BKI . . . E 5 -36.566 -42.899 -9.166 0.75 54.81 ? C BKI 1449 A 1 HETATM 2 N N BKI . . . E 5 -39.738 -41.01 -11.197 0.75 51.96 ? N BKI 1449 A 1 HETATM 3 O O BKI . . . E 5 -43.84 -39.981 -13.128 0.75 50.57 ? O BKI 1449 A 1 HETATM 4 BR BR BKI . . . E 5 -41.293 -34.328 -15.868 0.75 66.76 ? BR BKI 1449 A 1 HETATM 5 C C1 BKI . . . E 5 -36.56 -42.823 -10.548 0.75 54.78 ? C1 BKI 1449 A 1 HETATM 6 N N1 BKI . . . E 5 -41.596 -42.532 -10.785 0.75 50.54 ? N1 BKI 1449 A 1 HETATM 7 C C2 BKI . . . E 5 -37.615 -42.228 -11.222 0.75 53.47 ? C2 BKI 1449 A 1 HETATM 8 N N2 BKI . . . E 5 -43.61 -41.815 -11.796 0.75 50.41 ? N2 BKI 1449 A 1 HETATM 9 C C3 BKI . . . E 5 -38.678 -41.692 -10.502 0.75 52.42 ? C3 BKI 1449 A 1 HETATM 10 C C4 BKI . . . E 5 -38.687 -41.772 -9.109 0.75 52.71 ? C4 BKI 1449 A 1 HETATM 11 C C5 BKI . . . E 5 -37.628 -42.379 -8.45 0.75 53.66 ? C5 BKI 1449 A 1 HETATM 12 C C6 BKI . . . E 5 -39.569 -39.821 -11.868 0.75 51.58 ? C6 BKI 1449 A 1 HETATM 13 C C7 BKI . . . E 5 -40.743 -39.415 -12.446 0.75 51.65 ? C7 BKI 1449 A 1 HETATM 14 C C8 BKI . . . E 5 -41.721 -40.425 -12.118 0.75 50.44 ? C8 BKI 1449 A 1 HETATM 15 C C9 BKI . . . E 5 -41.052 -41.412 -11.336 0.75 51.18 ? C9 BKI 1449 A 1 HETATM 16 C C10 BKI . . . E 5 -42.871 -42.663 -11.035 0.75 50.44 ? C10 BKI 1449 A 1 HETATM 17 C C11 BKI . . . E 5 -43.118 -40.661 -12.401 0.75 50.35 ? C11 BKI 1449 A 1 HETATM 18 C C12 BKI . . . E 5 -40.878 -38.174 -13.249 0.75 55.07 ? C12 BKI 1449 A 1 HETATM 19 C C13 BKI . . . E 5 -39.805 -37.703 -14.001 0.75 57.34 ? C13 BKI 1449 A 1 HETATM 20 C C14 BKI . . . E 5 -39.922 -36.566 -14.779 0.75 59.13 ? C14 BKI 1449 A 1 HETATM 21 C C15 BKI . . . E 5 -41.124 -35.892 -14.801 0.75 61.76 ? C15 BKI 1449 A 1 HETATM 22 C C16 BKI . . . E 5 -42.201 -36.321 -14.046 0.75 59.24 ? C16 BKI 1449 A 1 HETATM 23 C C17 BKI . . . E 5 -42.074 -37.463 -13.276 0.75 56.62 ? C17 BKI 1449 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #