data_4D4K # _model_server_result.job_id ZzulP55qxLqIyNJVVAGoNQ _model_server_result.datetime_utc '2024-11-05 08:09:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1448}' # _entry.id 4D4K # _exptl.entry_id 4D4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D4K _cell.length_a 102.97 _cell.length_b 102.97 _cell.length_c 256.53 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -42.755 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 125 n n O1 HO1 F6P sing 126 n n C1 C2 F6P sing 127 n n C1 H11 F6P sing 128 n n C1 H12 F6P sing 129 n n C2 O2 F6P sing 130 n n C2 C3 F6P sing 131 n n C2 O5 F6P sing 132 n n O2 HO2 F6P sing 133 n n C3 O3 F6P sing 134 n n C3 C4 F6P sing 135 n n C3 H3 F6P sing 136 n n O3 HO3 F6P sing 137 n n C4 O4 F6P sing 138 n n C4 C5 F6P sing 139 n n C4 H4 F6P sing 140 n n O4 HO4 F6P sing 141 n n C5 O5 F6P sing 142 n n C5 C6 F6P sing 143 n n C5 H5 F6P sing 144 n n C6 O6 F6P sing 145 n n C6 H61 F6P sing 146 n n C6 H62 F6P sing 147 n n O6 P F6P sing 148 n n P O1P F6P doub 149 n n P O2P F6P sing 150 n n P O3P F6P sing 151 n n O2P HOP2 F6P sing 152 n n O3P HOP3 F6P sing 153 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4D4K _atom_sites.fract_transf_matrix[1][1] 0.009712 _atom_sites.fract_transf_matrix[1][2] 0.005607 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PHS A 1 1446 1446 PHS PHS . C 3 PO4 A 1 1447 1447 PO4 PO4 . D 4 F6P A 1 1448 1448 F6P F6P . E 5 BKE A 1 1449 1449 BKE BKE . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . D 4 -6.77 -21.242 -12.793 1 85.86 ? O1 F6P 1448 A 1 HETATM 2 C C1 F6P . . . D 4 -7.366 -21.356 -14.094 1 85.19 ? C1 F6P 1448 A 1 HETATM 3 C C2 F6P . . . D 4 -8.822 -20.878 -14.097 1 84.5 ? C2 F6P 1448 A 1 HETATM 4 O O2 F6P . . . D 4 -9.659 -21.85 -14.725 1 84.31 ? O2 F6P 1448 A 1 HETATM 5 C C3 F6P . . . D 4 -8.96 -19.545 -14.828 1 83.15 ? C3 F6P 1448 A 1 HETATM 6 O O3 F6P . . . D 4 -9.409 -19.727 -16.172 1 83.16 ? O3 F6P 1448 A 1 HETATM 7 C C4 F6P . . . D 4 -9.979 -18.77 -14.016 1 82.68 ? C4 F6P 1448 A 1 HETATM 8 O O4 F6P . . . D 4 -9.681 -17.375 -14.018 1 81.59 ? O4 F6P 1448 A 1 HETATM 9 C C5 F6P . . . D 4 -9.805 -19.342 -12.62 1 84.19 ? C5 F6P 1448 A 1 HETATM 10 O O5 F6P . . . D 4 -9.311 -20.675 -12.763 1 84.94 ? O5 F6P 1448 A 1 HETATM 11 C C6 F6P . . . D 4 -11.078 -19.318 -11.796 1 83.72 ? C6 F6P 1448 A 1 HETATM 12 O O6 F6P . . . D 4 -10.73 -18.736 -10.536 1 82.85 ? O6 F6P 1448 A 1 HETATM 13 P P F6P . . . D 4 -11.19 -19.387 -9.149 1 81.78 ? P F6P 1448 A 1 HETATM 14 O O1P F6P . . . D 4 -12.188 -18.413 -8.618 1 81.6 ? O1P F6P 1448 A 1 HETATM 15 O O2P F6P . . . D 4 -11.837 -20.652 -9.624 1 83.23 ? O2P F6P 1448 A 1 HETATM 16 O O3P F6P . . . D 4 -9.929 -19.552 -8.333 1 81.67 ? O3P F6P 1448 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #