data_4D4K
#
_model_server_result.job_id            U10uYBnNmjaJEnlfvObtsQ 
_model_server_result.datetime_utc      '2024-11-05 07:53:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d4k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1449}' 
#
_entry.id    4D4K 
#
_exptl.entry_id    4D4K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              317.341 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-(4-methoxyphenyl)-5-phenyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4D4K 
_cell.length_a            102.97 
_cell.length_b            102.97 
_cell.length_c            256.53 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D4K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -42.755 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H15 N3 O2' 
_chem_comp.formula_weight    317.341 
_chem_comp.id                BKE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-(4-methoxyphenyl)-5-phenyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O BKE sing 70 n n 
N C4 BKE sing 71 n n 
N C7 BKE sing 72 n y 
N C10 BKE sing 73 n y 
O C1 BKE sing 74 n n 
C1 C2 BKE doub 75 n y 
C1 C6 BKE sing 76 n y 
N1 C10 BKE sing 77 n n 
N1 C11 BKE doub 78 n n 
O1 C12 BKE doub 79 n n 
C2 C3 BKE sing 80 n y 
N2 C11 BKE sing 81 n n 
N2 C12 BKE sing 82 n n 
C3 C4 BKE doub 83 n y 
C4 C5 BKE sing 84 n y 
C5 C6 BKE doub 85 n y 
C7 C8 BKE doub 86 n y 
C8 C9 BKE sing 87 n y 
C8 C13 BKE sing 88 n n 
C9 C10 BKE doub 89 n y 
C9 C12 BKE sing 90 n n 
C13 C14 BKE doub 91 n y 
C13 C18 BKE sing 92 n y 
C14 C15 BKE sing 93 n y 
C15 C16 BKE doub 94 n y 
C16 C17 BKE sing 95 n y 
C17 C18 BKE doub 96 n y 
C H BKE sing 97 n n 
C HA BKE sing 98 n n 
C HB BKE sing 99 n n 
C2 H2 BKE sing 100 n n 
N2 HN2 BKE sing 101 n n 
C3 H3 BKE sing 102 n n 
C5 H5 BKE sing 103 n n 
C6 H6 BKE sing 104 n n 
C7 H7 BKE sing 105 n n 
C11 H11 BKE sing 106 n n 
C14 H14 BKE sing 107 n n 
C15 H15 BKE sing 108 n n 
C16 H16 BKE sing 109 n n 
C17 H17 BKE sing 110 n n 
C18 H18 BKE sing 111 n n 
#
_atom_sites.entry_id                     4D4K 
_atom_sites.fract_transf_matrix[1][1]    0.009712 
_atom_sites.fract_transf_matrix[1][2]    0.005607 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011214 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PHS A 1 1446 1446 PHS PHS . 
C 3 PO4 A 1 1447 1447 PO4 PO4 . 
D 4 F6P A 1 1448 1448 F6P F6P . 
E 5 BKE A 1 1449 1449 BKE BKE . 
F 6 HOH A 1 2001 2001 HOH HOH . 
F 6 HOH A 2 2002 2002 HOH HOH . 
F 6 HOH A 3 2003 2003 HOH HOH . 
F 6 HOH A 4 2004 2004 HOH HOH . 
F 6 HOH A 5 2005 2005 HOH HOH . 
F 6 HOH A 6 2006 2006 HOH HOH . 
F 6 HOH A 7 2007 2007 HOH HOH . 
F 6 HOH A 8 2008 2008 HOH HOH . 
F 6 HOH A 9 2009 2009 HOH HOH . 
F 6 HOH A 10 2010 2010 HOH HOH . 
F 6 HOH A 11 2011 2011 HOH HOH . 
F 6 HOH A 12 2012 2012 HOH HOH . 
F 6 HOH A 13 2013 2013 HOH HOH . 
F 6 HOH A 14 2014 2014 HOH HOH . 
F 6 HOH A 15 2015 2015 HOH HOH . 
F 6 HOH A 16 2016 2016 HOH HOH . 
F 6 HOH A 17 2017 2017 HOH HOH . 
F 6 HOH A 18 2018 2018 HOH HOH . 
F 6 HOH A 19 2019 2019 HOH HOH . 
F 6 HOH A 20 2020 2020 HOH HOH . 
F 6 HOH A 21 2021 2021 HOH HOH . 
F 6 HOH A 22 2022 2022 HOH HOH . 
F 6 HOH A 23 2023 2023 HOH HOH . 
F 6 HOH A 24 2024 2024 HOH HOH . 
F 6 HOH A 25 2025 2025 HOH HOH . 
F 6 HOH A 26 2026 2026 HOH HOH . 
F 6 HOH A 27 2027 2027 HOH HOH . 
F 6 HOH A 28 2028 2028 HOH HOH . 
F 6 HOH A 29 2029 2029 HOH HOH . 
F 6 HOH A 30 2030 2030 HOH HOH . 
F 6 HOH A 31 2031 2031 HOH HOH . 
F 6 HOH A 32 2032 2032 HOH HOH . 
F 6 HOH A 33 2033 2033 HOH HOH . 
F 6 HOH A 34 2034 2034 HOH HOH . 
F 6 HOH A 35 2035 2035 HOH HOH . 
F 6 HOH A 36 2036 2036 HOH HOH . 
F 6 HOH A 37 2037 2037 HOH HOH . 
F 6 HOH A 38 2038 2038 HOH HOH . 
F 6 HOH A 39 2039 2039 HOH HOH . 
F 6 HOH A 40 2040 2040 HOH HOH . 
F 6 HOH A 41 2041 2041 HOH HOH . 
F 6 HOH A 42 2042 2042 HOH HOH . 
F 6 HOH A 43 2043 2043 HOH HOH . 
F 6 HOH A 44 2044 2044 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BKE . A . E 5 -35.055 -43.131 -8.129 0.4 63.33 ? C BKE 1449 A 1 
HETATM 2 C C BKE . B . E 5 -41.035 -34.878 -16.293 0.4 55.35 ? C BKE 1449 A 1 
HETATM 3 N N BKE . A . E 5 -40.318 -41.099 -11.058 0.4 55.49 ? N BKE 1449 A 1 
HETATM 4 N N BKE . B . E 5 -41.02 -39.778 -12.213 0.4 53.94 ? N BKE 1449 A 1 
HETATM 5 O O BKE . A . E 5 -36.406 -43.255 -7.739 0.4 62.5 ? O BKE 1449 A 1 
HETATM 6 O O BKE . B . E 5 -42.067 -35.359 -15.442 0.4 55.22 ? O BKE 1449 A 1 
HETATM 7 C C1 BKE . A . E 5 -37.362 -42.723 -8.559 0.4 60.91 ? C1 BKE 1449 A 1 
HETATM 8 C C1 BKE . B . E 5 -41.811 -36.439 -14.65 0.4 55.42 ? C1 BKE 1449 A 1 
HETATM 9 N N1 BKE . A . E 5 -42.168 -42.654 -10.655 0.4 53.73 ? N1 BKE 1449 A 1 
HETATM 10 N N1 BKE . B . E 5 -43.195 -40.917 -12.267 0.4 53.66 ? N1 BKE 1449 A 1 
HETATM 11 O O1 BKE . A . E 5 -44.334 -40.333 -13.282 0.4 53.3 ? O1 BKE 1449 A 1 
HETATM 12 O O1 BKE . B . E 5 -41.384 -43.792 -9.982 0.4 53.04 ? O1 BKE 1449 A 1 
HETATM 13 C C2 BKE . A . E 5 -36.987 -42.093 -9.746 0.4 59.52 ? C2 BKE 1449 A 1 
HETATM 14 C C2 BKE . B . E 5 -40.532 -37.013 -14.645 0.4 55.13 ? C2 BKE 1449 A 1 
HETATM 15 N N2 BKE . A . E 5 -44.129 -42.091 -11.843 0.4 53.75 ? N2 BKE 1449 A 1 
HETATM 16 N N2 BKE . B . E 5 -43.207 -42.915 -11.01 0.4 53.29 ? N2 BKE 1449 A 1 
HETATM 17 C C3 BKE . A . E 5 -37.961 -41.563 -10.565 0.4 58.49 ? C3 BKE 1449 A 1 
HETATM 18 C C3 BKE . B . E 5 -40.281 -38.098 -13.842 0.4 54.65 ? C3 BKE 1449 A 1 
HETATM 19 C C4 BKE . A . E 5 -39.307 -41.653 -10.21 0.4 57.81 ? C4 BKE 1449 A 1 
HETATM 20 C C4 BKE . B . E 5 -41.288 -38.64 -13.039 0.4 54.51 ? C4 BKE 1449 A 1 
HETATM 21 C C5 BKE . A . E 5 -39.661 -42.287 -9.021 0.4 59.4 ? C5 BKE 1449 A 1 
HETATM 22 C C5 BKE . B . E 5 -42.557 -38.062 -13.057 0.4 54.87 ? C5 BKE 1449 A 1 
HETATM 23 C C6 BKE . A . E 5 -38.689 -42.815 -8.199 0.4 60.51 ? C6 BKE 1449 A 1 
HETATM 24 C C6 BKE . B . E 5 -42.812 -36.97 -13.857 0.4 55.31 ? C6 BKE 1449 A 1 
HETATM 25 C C7 BKE . A . E 5 -40.142 -39.963 -11.805 0.4 54.97 ? C7 BKE 1449 A 1 
HETATM 26 C C7 BKE . B . E 5 -39.804 -40.019 -11.607 0.4 53.75 ? C7 BKE 1449 A 1 
HETATM 27 C C8 BKE . A . E 5 -41.281 -39.651 -12.493 0.4 54.69 ? C8 BKE 1449 A 1 
HETATM 28 C C8 BKE . B . E 5 -39.841 -41.191 -10.906 0.4 53.71 ? C8 BKE 1449 A 1 
HETATM 29 C C9 BKE . A . E 5 -42.248 -40.673 -12.161 0.4 54.25 ? C9 BKE 1449 A 1 
HETATM 30 C C9 BKE . B . E 5 -41.168 -41.709 -11.074 0.4 53.29 ? C9 BKE 1449 A 1 
HETATM 31 C C10 BKE . A . E 5 -41.614 -41.564 -11.252 0.4 54.32 ? C10 BKE 1449 A 1 
HETATM 32 C C10 BKE . B . E 5 -41.892 -40.81 -11.886 0.4 53.56 ? C10 BKE 1449 A 1 
HETATM 33 C C11 BKE . A . E 5 -43.418 -42.856 -10.981 0.4 53.67 ? C11 BKE 1449 A 1 
HETATM 34 C C11 BKE . B . E 5 -43.793 -41.981 -11.791 0.4 53.55 ? C11 BKE 1449 A 1 
HETATM 35 C C12 BKE . A . E 5 -43.627 -40.965 -12.499 0.4 53.8 ? C12 BKE 1449 A 1 
HETATM 36 C C12 BKE . B . E 5 -41.876 -42.871 -10.612 0.4 53.07 ? C12 BKE 1449 A 1 
HETATM 37 C C13 BKE . A . E 5 -41.395 -38.471 -13.388 0.4 54.78 ? C13 BKE 1449 A 1 
HETATM 38 C C13 BKE . B . E 5 -38.676 -41.73 -10.144 0.4 54.42 ? C13 BKE 1449 A 1 
HETATM 39 C C14 BKE . A . E 5 -40.318 -38.058 -14.161 0.4 54.86 ? C14 BKE 1449 A 1 
HETATM 40 C C14 BKE . B . E 5 -37.415 -41.786 -10.729 0.4 54.56 ? C14 BKE 1449 A 1 
HETATM 41 C C15 BKE . A . E 5 -40.39 -36.896 -14.912 0.4 55.26 ? C15 BKE 1449 A 1 
HETATM 42 C C15 BKE . B . E 5 -36.326 -42.246 -9.998 0.4 54.76 ? C15 BKE 1449 A 1 
HETATM 43 C C16 BKE . A . E 5 -41.539 -36.133 -14.899 0.4 55.55 ? C16 BKE 1449 A 1 
HETATM 44 C C16 BKE . B . E 5 -36.486 -42.656 -8.691 0.4 55.04 ? C16 BKE 1449 A 1 
HETATM 45 C C17 BKE . A . E 5 -42.62 -36.535 -14.138 0.4 55.45 ? C17 BKE 1449 A 1 
HETATM 46 C C17 BKE . B . E 5 -37.737 -42.612 -8.108 0.4 55.22 ? C17 BKE 1449 A 1 
HETATM 47 C C18 BKE . A . E 5 -42.558 -37.7 -13.39 0.4 55.01 ? C18 BKE 1449 A 1 
HETATM 48 C C18 BKE . B . E 5 -38.831 -42.151 -8.827 0.4 55.08 ? C18 BKE 1449 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#