data_4D4P # _model_server_result.job_id J9oLF1cJZjol0a-RQtSa8A _model_server_result.datetime_utc '2024-11-05 00:19:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1336}' # _entry.id 4D4P # _exptl.entry_id 4D4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D4P _cell.length_a 152.06 _cell.length_b 152.06 _cell.length_c 203.85 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 370 A CYS 368 1_555 G FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A SG CYS 372 A CYS 370 1_555 G FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A SG CYS 392 A CYS 390 1_555 G FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 A SG CYS 395 A CYS 393 1_555 G FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc5 C SG CYS 370 C CYS 368 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 C SG CYS 372 C CYS 370 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc7 C SG CYS 392 C CYS 390 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 C SG CYS 395 C CYS 393 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 E SG CYS 370 G CYS 368 1_555 N FE FE . G FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc10 E SG CYS 372 G CYS 370 1_555 N FE FE . G FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc11 E SG CYS 392 G CYS 390 1_555 N FE FE . G FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc12 E SG CYS 395 G CYS 393 1_555 N FE FE . G FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc13 F SG CYS 370 H CYS 368 1_555 O FE FE . H FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc14 F SG CYS 372 H CYS 370 1_555 O FE FE . H FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc15 F SG CYS 392 H CYS 390 1_555 O FE FE . H FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc16 F SG CYS 395 H CYS 393 1_555 O FE FE . H FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 288 n n S O2 SO4 doub 289 n n S O3 SO4 sing 290 n n S O4 SO4 sing 291 n n # _atom_sites.entry_id 4D4P _atom_sites.fract_transf_matrix[1][1] 0.006576 _atom_sites.fract_transf_matrix[1][2] 0.003797 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FE A 1 501 501 FE FE . H 3 SO4 A 1 1418 1418 SO4 SO4 . I 3 SO4 B 1 1336 1336 SO4 SO4 . J 3 SO4 B 1 1337 1337 SO4 SO4 . K 2 FE C 1 501 501 FE FE . L 3 SO4 E 1 1335 1335 SO4 SO4 . M 3 SO4 E 1 1336 1336 SO4 SO4 . N 2 FE G 1 501 501 FE FE . O 2 FE H 1 501 501 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 3 49.861 55.834 23.536 1 135.48 ? S SO4 1336 B 1 HETATM 2 O O1 SO4 . . . I 3 50.485 54.583 23.116 1 135.48 ? O1 SO4 1336 B 1 HETATM 3 O O2 SO4 . . . I 3 48.804 55.549 24.502 1 135.48 ? O2 SO4 1336 B 1 HETATM 4 O O3 SO4 . . . I 3 49.293 56.51 22.373 1 135.48 ? O3 SO4 1336 B 1 HETATM 5 O O4 SO4 . . . I 3 50.866 56.694 24.156 1 135.48 ? O4 SO4 1336 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #