data_4D58 # _model_server_result.job_id oz2imgBvy14PJC5XovFyPQ _model_server_result.datetime_utc '2024-12-18 10:18:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1690}' # _entry.id 4D58 # _exptl.entry_id 4D58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.936 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({5-CHLORO-2-[(2-METHOXY-4-MORPHOLIN-4-YLPHENYL)AMINO]PYRIMIDIN-4-YL}AMINO)-N-METHYLBENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.65 _cell.angle_gamma 90 _cell.entry_id 4D58 _cell.length_a 44.983 _cell.length_b 123.368 _cell.length_c 50.843 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1 B,C,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H25 Cl N6 O3' _chem_comp.formula_weight 468.936 _chem_comp.id BI9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({5-CHLORO-2-[(2-METHOXY-4-MORPHOLIN-4-YLPHENYL)AMINO]PYRIMIDIN-4-YL}AMINO)-N-METHYLBENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBC CBE BI9 sing 70 n n CBC NBB BI9 sing 71 n n CBE OBG BI9 sing 72 n n OBG CBF BI9 sing 73 n n CBF CBD BI9 sing 74 n n CBD NBB BI9 sing 75 n n NBB CBA BI9 sing 76 n n CBA CAY BI9 sing 77 n y CBA CAX BI9 doub 78 n y CAY CAS BI9 doub 79 n y CAS OAT BI9 sing 80 n n CAS CAL BI9 sing 81 n y OAT CAU BI9 sing 82 n n CAX CAR BI9 sing 83 n y CAR CAL BI9 doub 84 n y CAL NAH BI9 sing 85 n n NAH C2 BI9 sing 86 n n C2 N3 BI9 sing 87 n y C2 N1 BI9 doub 88 n y N3 C4 BI9 doub 89 n y N1 C6 BI9 sing 90 n y C6 C5 BI9 doub 91 n y C5 CL5 BI9 sing 92 n n C5 C4 BI9 sing 93 n y C4 NAE BI9 sing 94 n n NAE CAJ BI9 sing 95 n n CAJ CAQ BI9 sing 96 n y CAJ CAP BI9 doub 97 n y CAQ CAW BI9 doub 98 n y CAW CAZ BI9 sing 99 n y CAZ CAV BI9 doub 100 n y CAV CAP BI9 sing 101 n y CAP CAO BI9 sing 102 n n CAO OAI BI9 doub 103 n n CAO NAN BI9 sing 104 n n NAN CAM BI9 sing 105 n n CBC HBC1 BI9 sing 106 n n CBC HBC2 BI9 sing 107 n n CBE HBE1 BI9 sing 108 n n CBE HBE2 BI9 sing 109 n n CBF HBF1 BI9 sing 110 n n CBF HBF2 BI9 sing 111 n n CBD HBD1 BI9 sing 112 n n CBD HBD2 BI9 sing 113 n n CAY HAY BI9 sing 114 n n CAX HAX BI9 sing 115 n n CAU HAU1 BI9 sing 116 n n CAU HAU2 BI9 sing 117 n n CAU HAU3 BI9 sing 118 n n CAR HAR BI9 sing 119 n n NAH HAH BI9 sing 120 n n C6 H6 BI9 sing 121 n n NAE HAE BI9 sing 122 n n CAQ HAQ BI9 sing 123 n n CAW HAW BI9 sing 124 n n CAZ HAZ BI9 sing 125 n n CAV HAV BI9 sing 126 n n NAN HAN BI9 sing 127 n n CAM HAM1 BI9 sing 128 n n CAM HAM2 BI9 sing 129 n n CAM HAM3 BI9 sing 130 n n # _atom_sites.entry_id 4D58 _atom_sites.fract_transf_matrix[1][1] 0.022231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001808 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 B 1 1687 1687 SO4 SO4 . D 2 SO4 B 1 1688 1688 SO4 SO4 . E 2 SO4 B 1 1689 1689 SO4 SO4 . F 3 BI9 B 1 1690 1690 BI9 BI9 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . G 4 HOH A 80 2080 2080 HOH HOH . G 4 HOH A 81 2081 2081 HOH HOH . G 4 HOH A 82 2082 2082 HOH HOH . G 4 HOH A 83 2083 2083 HOH HOH . G 4 HOH A 84 2084 2084 HOH HOH . G 4 HOH A 85 2085 2085 HOH HOH . G 4 HOH A 86 2086 2086 HOH HOH . G 4 HOH A 87 2087 2087 HOH HOH . G 4 HOH A 88 2088 2088 HOH HOH . G 4 HOH A 89 2089 2089 HOH HOH . G 4 HOH A 90 2090 2090 HOH HOH . G 4 HOH A 91 2091 2091 HOH HOH . G 4 HOH A 92 2092 2092 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . H 4 HOH B 33 2033 2033 HOH HOH . H 4 HOH B 34 2034 2034 HOH HOH . H 4 HOH B 35 2035 2035 HOH HOH . H 4 HOH B 36 2036 2036 HOH HOH . H 4 HOH B 37 2037 2037 HOH HOH . H 4 HOH B 38 2038 2038 HOH HOH . H 4 HOH B 39 2039 2039 HOH HOH . H 4 HOH B 40 2040 2040 HOH HOH . H 4 HOH B 41 2041 2041 HOH HOH . H 4 HOH B 42 2042 2042 HOH HOH . H 4 HOH B 43 2043 2043 HOH HOH . H 4 HOH B 44 2044 2044 HOH HOH . H 4 HOH B 45 2045 2045 HOH HOH . H 4 HOH B 46 2046 2046 HOH HOH . H 4 HOH B 47 2047 2047 HOH HOH . H 4 HOH B 48 2048 2048 HOH HOH . H 4 HOH B 49 2049 2049 HOH HOH . H 4 HOH B 50 2050 2050 HOH HOH . H 4 HOH B 51 2051 2051 HOH HOH . H 4 HOH B 52 2052 2052 HOH HOH . H 4 HOH B 53 2053 2053 HOH HOH . H 4 HOH B 54 2054 2054 HOH HOH . H 4 HOH B 55 2055 2055 HOH HOH . H 4 HOH B 56 2056 2056 HOH HOH . H 4 HOH B 57 2057 2057 HOH HOH . H 4 HOH B 58 2058 2058 HOH HOH . H 4 HOH B 59 2059 2059 HOH HOH . H 4 HOH B 60 2060 2060 HOH HOH . H 4 HOH B 61 2061 2061 HOH HOH . H 4 HOH B 62 2062 2062 HOH HOH . H 4 HOH B 63 2063 2063 HOH HOH . H 4 HOH B 64 2064 2064 HOH HOH . H 4 HOH B 65 2065 2065 HOH HOH . H 4 HOH B 66 2066 2066 HOH HOH . H 4 HOH B 67 2067 2067 HOH HOH . H 4 HOH B 68 2068 2068 HOH HOH . H 4 HOH B 69 2069 2069 HOH HOH . H 4 HOH B 70 2070 2070 HOH HOH . H 4 HOH B 71 2071 2071 HOH HOH . H 4 HOH B 72 2072 2072 HOH HOH . H 4 HOH B 73 2073 2073 HOH HOH . H 4 HOH B 74 2074 2074 HOH HOH . H 4 HOH B 75 2075 2075 HOH HOH . H 4 HOH B 76 2076 2076 HOH HOH . H 4 HOH B 77 2077 2077 HOH HOH . H 4 HOH B 78 2078 2078 HOH HOH . H 4 HOH B 79 2079 2079 HOH HOH . H 4 HOH B 80 2080 2080 HOH HOH . H 4 HOH B 81 2081 2081 HOH HOH . H 4 HOH B 82 2082 2082 HOH HOH . H 4 HOH B 83 2083 2083 HOH HOH . H 4 HOH B 84 2084 2084 HOH HOH . H 4 HOH B 85 2085 2085 HOH HOH . H 4 HOH B 86 2086 2086 HOH HOH . H 4 HOH B 87 2087 2087 HOH HOH . H 4 HOH B 88 2088 2088 HOH HOH . H 4 HOH B 89 2089 2089 HOH HOH . H 4 HOH B 90 2090 2090 HOH HOH . H 4 HOH B 91 2091 2091 HOH HOH . H 4 HOH B 92 2092 2092 HOH HOH . H 4 HOH B 93 2093 2093 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBC BI9 . . . F 3 16.266 19.256 27.212 1 77.58 ? CBC BI9 1690 B 1 HETATM 2 C CBE BI9 . . . F 3 16.33 20.062 28.452 1 77.69 ? CBE BI9 1690 B 1 HETATM 3 O OBG BI9 . . . F 3 15.064 19.759 29.135 1 78.2 ? OBG BI9 1690 B 1 HETATM 4 C CBF BI9 . . . F 3 14.931 18.392 29.636 1 75.88 ? CBF BI9 1690 B 1 HETATM 5 C CBD BI9 . . . F 3 15.3 17.352 28.562 1 74.73 ? CBD BI9 1690 B 1 HETATM 6 N NBB BI9 . . . F 3 16.387 17.844 27.671 1 75.13 ? NBB BI9 1690 B 1 HETATM 7 C CBA BI9 . . . F 3 17.418 17.048 27.289 1 69.53 ? CBA BI9 1690 B 1 HETATM 8 C CAY BI9 . . . F 3 18.725 17.548 27.226 1 66.63 ? CAY BI9 1690 B 1 HETATM 9 C CAS BI9 . . . F 3 19.783 16.72 26.831 1 63.5 ? CAS BI9 1690 B 1 HETATM 10 O OAT BI9 . . . F 3 21.088 17.138 26.744 1 62.69 ? OAT BI9 1690 B 1 HETATM 11 C CAU BI9 . . . F 3 21.514 18.197 27.625 1 62.33 ? CAU BI9 1690 B 1 HETATM 12 C CAX BI9 . . . F 3 17.187 15.71 26.942 1 69.22 ? CAX BI9 1690 B 1 HETATM 13 C CAR BI9 . . . F 3 18.237 14.877 26.548 1 66.16 ? CAR BI9 1690 B 1 HETATM 14 C CAL BI9 . . . F 3 19.549 15.376 26.5 1 65 ? CAL BI9 1690 B 1 HETATM 15 N NAH BI9 . . . F 3 20.642 14.688 26.107 1 60.68 ? NAH BI9 1690 B 1 HETATM 16 C C2 BI9 . . . F 3 20.813 13.367 26.313 1 60.38 ? C2 BI9 1690 B 1 HETATM 17 N N3 BI9 . . . F 3 19.881 12.576 26.892 1 57.46 ? N3 BI9 1690 B 1 HETATM 18 N N1 BI9 . . . F 3 21.992 12.841 25.904 1 56.02 ? N1 BI9 1690 B 1 HETATM 19 C C6 BI9 . . . F 3 22.256 11.483 26.072 1 57.88 ? C6 BI9 1690 B 1 HETATM 20 C C5 BI9 . . . F 3 21.295 10.676 26.676 1 59.04 ? C5 BI9 1690 B 1 HETATM 21 CL CL5 BI9 . . . F 3 21.666 8.971 26.851 1 59.59 ? CL5 BI9 1690 B 1 HETATM 22 C C4 BI9 . . . F 3 20.074 11.25 27.078 1 59.91 ? C4 BI9 1690 B 1 HETATM 23 N NAE BI9 . . . F 3 19.169 10.419 27.665 1 60.85 ? NAE BI9 1690 B 1 HETATM 24 C CAJ BI9 . . . F 3 17.865 10.774 27.87 1 60.31 ? CAJ BI9 1690 B 1 HETATM 25 C CAQ BI9 . . . F 3 17.468 12.039 28.331 1 58.1 ? CAQ BI9 1690 B 1 HETATM 26 C CAW BI9 . . . F 3 16.118 12.326 28.534 1 59.2 ? CAW BI9 1690 B 1 HETATM 27 C CAZ BI9 . . . F 3 15.149 11.351 28.299 1 59.95 ? CAZ BI9 1690 B 1 HETATM 28 C CAV BI9 . . . F 3 15.531 10.086 27.857 1 59.34 ? CAV BI9 1690 B 1 HETATM 29 C CAP BI9 . . . F 3 16.878 9.786 27.646 1 60.8 ? CAP BI9 1690 B 1 HETATM 30 C CAO BI9 . . . F 3 17.192 8.496 27.211 1 64.1 ? CAO BI9 1690 B 1 HETATM 31 O OAI BI9 . . . F 3 16.863 7.515 27.881 1 69.82 ? OAI BI9 1690 B 1 HETATM 32 N NAN BI9 . . . F 3 17.866 8.437 26.055 1 64.95 ? NAN BI9 1690 B 1 HETATM 33 C CAM BI9 . . . F 3 18.262 7.135 25.515 1 66.35 ? CAM BI9 1690 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #