data_4D6B # _model_server_result.job_id JKA2eMvROBcBugc8feAyCw _model_server_result.datetime_utc '2024-11-22 15:49:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1134}' # _entry.id 4D6B # _exptl.entry_id 4D6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D6B _cell.length_a 64.311 _cell.length_b 64.311 _cell.length_c 101.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 239 n n C1 O2 PLM doub 240 n n C1 C2 PLM sing 241 n n O1 H PLM sing 242 n n C2 C3 PLM sing 243 n n C2 H21 PLM sing 244 n n C2 H22 PLM sing 245 n n C3 C4 PLM sing 246 n n C3 H31 PLM sing 247 n n C3 H32 PLM sing 248 n n C4 C5 PLM sing 249 n n C4 H41 PLM sing 250 n n C4 H42 PLM sing 251 n n C5 C6 PLM sing 252 n n C5 H51 PLM sing 253 n n C5 H52 PLM sing 254 n n C6 C7 PLM sing 255 n n C6 H61 PLM sing 256 n n C6 H62 PLM sing 257 n n C7 C8 PLM sing 258 n n C7 H71 PLM sing 259 n n C7 H72 PLM sing 260 n n C8 C9 PLM sing 261 n n C8 H81 PLM sing 262 n n C8 H82 PLM sing 263 n n C9 CA PLM sing 264 n n C9 H91 PLM sing 265 n n C9 H92 PLM sing 266 n n CA CB PLM sing 267 n n CA HA1 PLM sing 268 n n CA HA2 PLM sing 269 n n CB CC PLM sing 270 n n CB HB1 PLM sing 271 n n CB HB2 PLM sing 272 n n CC CD PLM sing 273 n n CC HC1 PLM sing 274 n n CC HC2 PLM sing 275 n n CD CE PLM sing 276 n n CD HD1 PLM sing 277 n n CD HD2 PLM sing 278 n n CE CF PLM sing 279 n n CE HE1 PLM sing 280 n n CE HE2 PLM sing 281 n n CF CG PLM sing 282 n n CF HF1 PLM sing 283 n n CF HF2 PLM sing 284 n n CG HG1 PLM sing 285 n n CG HG2 PLM sing 286 n n CG HG3 PLM sing 287 n n # _atom_sites.entry_id 4D6B _atom_sites.fract_transf_matrix[1][1] 0.015549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1132 1132 SO4 SO4 . C 2 SO4 A 1 1133 1133 SO4 SO4 . D 3 PLM A 1 1134 1134 PLM PLM . E 2 SO4 A 1 1138 1138 SO4 SO4 . F 2 SO4 A 1 1135 1135 SO4 SO4 . G 2 SO4 A 1 1136 1136 SO4 SO4 . H 2 SO4 A 1 1137 1137 SO4 SO4 . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . D 3 -2.876 23.505 0.913 1 57.99 ? C1 PLM 1134 A 1 HETATM 2 O O1 PLM . . . D 3 -3.499 22.438 0.657 1 64.34 ? O1 PLM 1134 A 1 HETATM 3 O O2 PLM . . . D 3 -3.192 24.441 1.69 1 62.45 ? O2 PLM 1134 A 1 HETATM 4 C C2 PLM . . . D 3 -1.519 23.719 0.174 1 55.74 ? C2 PLM 1134 A 1 HETATM 5 C C3 PLM . . . D 3 -1.498 24.848 -0.853 1 57.65 ? C3 PLM 1134 A 1 HETATM 6 C C4 PLM . . . D 3 -0.58 24.58 -2.041 1 60.31 ? C4 PLM 1134 A 1 HETATM 7 C C5 PLM . . . D 3 -0.757 25.58 -3.171 1 64.99 ? C5 PLM 1134 A 1 HETATM 8 C C6 PLM . . . D 3 0.021 25.211 -4.424 1 63.54 ? C6 PLM 1134 A 1 HETATM 9 C C7 PLM . . . D 3 -0.378 26.034 -5.631 1 56.15 ? C7 PLM 1134 A 1 HETATM 10 C C8 PLM . . . D 3 0.406 27.329 -5.776 1 66.73 ? C8 PLM 1134 A 1 HETATM 11 C C9 PLM . . . D 3 -0.086 28.181 -6.934 1 57.04 ? C9 PLM 1134 A 1 HETATM 12 C CA PLM . . . D 3 -1.17 29.188 -6.557 1 57.27 ? CA PLM 1134 A 1 HETATM 13 C CB PLM . . . D 3 -2.365 29.193 -7.512 1 52.8 ? CB PLM 1134 A 1 HETATM 14 C CC PLM . . . D 3 -3.58 29.939 -6.956 1 57.87 ? CC PLM 1134 A 1 HETATM 15 C CD PLM . . . D 3 -4.692 29.014 -6.448 1 69.09 ? CD PLM 1134 A 1 HETATM 16 C CE PLM . . . D 3 -4.29 28.176 -5.227 1 61.48 ? CE PLM 1134 A 1 HETATM 17 C CF PLM . . . D 3 -5.363 27.171 -4.791 1 61.55 ? CF PLM 1134 A 1 HETATM 18 C CG PLM . . . D 3 -6.609 27.829 -4.186 1 66.94 ? CG PLM 1134 A 1 HETATM 19 H H21 PLM . . . D 3 -0.748 23.88 0.942 1 66.89 ? H21 PLM 1134 A 1 HETATM 20 H H22 PLM . . . D 3 -1.261 22.763 -0.309 1 66.89 ? H22 PLM 1134 A 1 HETATM 21 H H31 PLM . . . D 3 -1.197 25.777 -0.351 1 69.17 ? H31 PLM 1134 A 1 HETATM 22 H H32 PLM . . . D 3 -2.522 25.027 -1.207 1 69.17 ? H32 PLM 1134 A 1 HETATM 23 H H41 PLM . . . D 3 -0.759 23.564 -2.427 1 72.37 ? H41 PLM 1134 A 1 HETATM 24 H H42 PLM . . . D 3 0.47 24.597 -1.706 1 72.37 ? H42 PLM 1134 A 1 HETATM 25 H H51 PLM . . . D 3 -1.827 25.663 -3.417 1 77.99 ? H51 PLM 1134 A 1 HETATM 26 H H52 PLM . . . D 3 -0.443 26.578 -2.827 1 77.99 ? H52 PLM 1134 A 1 HETATM 27 H H61 PLM . . . D 3 1.099 25.336 -4.237 1 76.25 ? H61 PLM 1134 A 1 HETATM 28 H H62 PLM . . . D 3 -0.131 24.144 -4.645 1 76.25 ? H62 PLM 1134 A 1 HETATM 29 H H71 PLM . . . D 3 -0.245 25.428 -6.541 1 67.38 ? H71 PLM 1134 A 1 HETATM 30 H H72 PLM . . . D 3 -1.452 26.264 -5.573 1 67.38 ? H72 PLM 1134 A 1 HETATM 31 H H81 PLM . . . D 3 0.338 27.906 -4.842 1 80.07 ? H81 PLM 1134 A 1 HETATM 32 H H82 PLM . . . D 3 1.472 27.096 -5.92 1 80.07 ? H82 PLM 1134 A 1 HETATM 33 H H91 PLM . . . D 3 -0.469 27.522 -7.727 1 68.44 ? H91 PLM 1134 A 1 HETATM 34 H H92 PLM . . . D 3 0.768 28.718 -7.373 1 68.44 ? H92 PLM 1134 A 1 HETATM 35 H HA1 PLM . . . D 3 -0.732 30.196 -6.521 1 68.73 ? HA1 PLM 1134 A 1 HETATM 36 H HA2 PLM . . . D 3 -1.523 28.973 -5.537 1 68.73 ? HA2 PLM 1134 A 1 HETATM 37 H HB1 PLM . . . D 3 -2.651 28.155 -7.742 1 63.36 ? HB1 PLM 1134 A 1 HETATM 38 H HB2 PLM . . . D 3 -2.065 29.647 -8.468 1 63.36 ? HB2 PLM 1134 A 1 HETATM 39 H HC1 PLM . . . D 3 -3.987 30.6 -7.734 1 69.44 ? HC1 PLM 1134 A 1 HETATM 40 H HC2 PLM . . . D 3 -3.255 30.597 -6.136 1 69.44 ? HC2 PLM 1134 A 1 HETATM 41 H HD1 PLM . . . D 3 -5.002 28.341 -7.262 1 82.9 ? HD1 PLM 1134 A 1 HETATM 42 H HD2 PLM . . . D 3 -5.577 29.617 -6.198 1 82.9 ? HD2 PLM 1134 A 1 HETATM 43 H HE1 PLM . . . D 3 -3.357 27.635 -5.448 1 73.77 ? HE1 PLM 1134 A 1 HETATM 44 H HE2 PLM . . . D 3 -4.061 28.848 -4.385 1 73.77 ? HE2 PLM 1134 A 1 HETATM 45 H HF1 PLM . . . D 3 -5.658 26.56 -5.657 1 73.85 ? HF1 PLM 1134 A 1 HETATM 46 H HF2 PLM . . . D 3 -4.928 26.473 -4.061 1 73.85 ? HF2 PLM 1134 A 1 HETATM 47 H HG1 PLM . . . D 3 -7.352 27.081 -3.887 1 80.33 ? HG1 PLM 1134 A 1 HETATM 48 H HG2 PLM . . . D 3 -6.353 28.417 -3.296 1 80.33 ? HG2 PLM 1134 A 1 HETATM 49 H HG3 PLM . . . D 3 -7.088 28.507 -4.904 1 80.33 ? HG3 PLM 1134 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #