data_4D6U
#
_model_server_result.job_id            YKu_PKAkC1RS78FeJMXD2Q 
_model_server_result.datetime_utc      '2024-11-05 16:39:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d6u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":503}' 
#
_entry.id    4D6U 
#
_exptl.entry_id    4D6U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              425.786 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-chloro-6-(hydroxymethyl)-2-methyl-5-{4-[3-(trifluoromethoxy)phenoxy]phenyl}pyridin-4-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4D6U 
_cell.length_a            129.49 
_cell.length_b            129.49 
_cell.length_c            719.936 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D6U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS decameric 10 software_defined_assembly 1 
PQS decameric 10 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 1 1 
K,L,M,N,O,P,Q,R,S,T,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 14 W N N 
? 14 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 H SG CYS 37 H CYS 24 1_555 H SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 H SG CYS 53 H CYS 40 1_555 H SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 O SG CYS 222 R CYS 144 1_555 O SG CYS 238 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 R SG CYS 37 U CYS 24 1_555 R SG CYS 81 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 R SG CYS 53 U CYS 40 1_555 R SG CYS 67 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 C NE2 HIS 201 C HIS 201 1_555 W O25 G8U . C G8U 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? 
covale ? covale2 M NE2 HIS 201 P HIS 201 1_555 LA O25 G8U . P G8U 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? 
metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc5 D NE2 HIS 125 D HIS 41 1_555 Z FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc6 D SD MET 244 D MET 160 1_555 Z FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc7 M NE2 HIS 83 P HIS 83 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc8 M NE2 HIS 97 P HIS 97 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc9 M NE2 HIS 182 P HIS 182 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc10 M NE2 HIS 196 P HIS 196 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc11 N NE2 HIS 125 Q HIS 41 1_555 OA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc12 N SD MET 244 Q MET 160 1_555 OA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc13 O SG CYS 236 R CYS 158 1_555 RA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
#
_chem_comp.formula           'C20 H15 Cl F3 N O4' 
_chem_comp.formula_weight    425.786 
_chem_comp.id                G8U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-chloro-6-(hydroxymethyl)-2-methyl-5-{4-[3-(trifluoromethoxy)phenoxy]phenyl}pyridin-4-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 F1 G8U sing 342 n n 
C1 F2 G8U sing 343 n n 
C1 F3 G8U sing 344 n n 
C1 O29 G8U sing 345 n n 
C4 C5 G8U sing 346 n y 
C4 C9 G8U doub 347 n y 
C4 O29 G8U sing 348 n n 
C5 C6 G8U doub 349 n y 
C6 C7 G8U sing 350 n y 
C6 O10 G8U sing 351 n n 
C7 C8 G8U doub 352 n y 
C8 C9 G8U sing 353 n y 
O10 C11 G8U sing 354 n n 
C11 C12 G8U sing 355 n y 
C11 C16 G8U doub 356 n y 
C12 C13 G8U doub 357 n y 
C13 C14 G8U sing 358 n y 
C14 C15 G8U doub 359 n y 
C14 C17 G8U sing 360 n n 
C15 C16 G8U sing 361 n y 
C17 C18 G8U sing 362 n y 
C17 C22 G8U doub 363 n y 
C18 C19 G8U doub 364 n y 
C18 O23 G8U sing 365 n n 
C19 C20 G8U sing 366 n y 
C19 CL G8U sing 367 n n 
C20 C27 G8U sing 368 n n 
C20 N28 G8U doub 369 n y 
C22 C24 G8U sing 370 n n 
C22 N28 G8U sing 371 n y 
C24 O25 G8U sing 372 n n 
C5 H5 G8U sing 373 n n 
C9 H9 G8U sing 374 n n 
C7 H7 G8U sing 375 n n 
C8 H8 G8U sing 376 n n 
C12 H12 G8U sing 377 n n 
C16 H16 G8U sing 378 n n 
C13 H13 G8U sing 379 n n 
C15 H15 G8U sing 380 n n 
O23 H23 G8U sing 381 n n 
C27 H271 G8U sing 382 n n 
C27 H272 G8U sing 383 n n 
C27 H273 G8U sing 384 n n 
C24 H241 G8U sing 385 n n 
C24 H242 G8U sing 386 n n 
O25 H25 G8U sing 387 n n 
#
_atom_sites.entry_id                     4D6U 
_atom_sites.fract_transf_matrix[1][1]    0.007723 
_atom_sites.fract_transf_matrix[1][2]    0.004459 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001389 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 13 HEM C 1 501 501 HEM HEM . 
V 13 HEM C 1 502 502 HEM HEM . 
W 14 G8U C 1 503 503 G8U G8U . 
X 15 PO4 C 1 504 504 PO4 PO4 . 
Y 16 PEE C 1 505 505 PEE PEE . 
Z 17 HEC D 1 501 501 HEC HEC . 
AA 15 PO4 D 1 502 502 PO4 PO4 . 
BA 15 PO4 D 1 503 503 PO4 PO4 . 
CA 15 PO4 D 1 504 504 PO4 PO4 . 
DA 18 CDL D 1 505 505 CDL CDL . 
EA 16 PEE D 1 506 506 PEE PEE . 
FA 15 PO4 E 1 501 501 PO4 PO4 . 
GA 15 PO4 F 1 501 501 PO4 PO4 . 
HA 18 CDL G 1 501 501 CDL CDL . 
IA 15 PO4 N 1 501 501 PO4 PO4 . 
JA 13 HEM P 1 501 501 HEM HEM . 
KA 13 HEM P 1 502 502 HEM HEM . 
LA 14 G8U P 1 503 503 G8U G8U . 
MA 15 PO4 P 1 504 504 PO4 PO4 . 
NA 16 PEE P 1 505 505 PEE PEE . 
OA 17 HEC Q 1 501 501 HEC HEC . 
PA 18 CDL Q 1 505 505 CDL CDL . 
QA 16 PEE Q 1 506 506 PEE PEE . 
RA 19 FES R 1 501 501 FES FES . 
SA 20 GOL R 1 502 502 GOL GOL . 
TA 15 PO4 S 1 501 501 PO4 PO4 . 
UA 18 CDL T 1 501 501 CDL CDL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 G8U . . . W 14 45.324 11.716 14.722 1 207.27 ? C1 G8U 503 C 1 
HETATM 2 F F1 G8U . . . W 14 44.506 11.175 13.849 1 230.57 ? F1 G8U 503 C 1 
HETATM 3 F F2 G8U . . . W 14 44.685 11.866 15.858 1 215.08 ? F2 G8U 503 C 1 
HETATM 4 F F3 G8U . . . W 14 45.7 12.886 14.271 1 190.73 ? F3 G8U 503 C 1 
HETATM 5 C C4 G8U . . . W 14 46.448 9.583 14.728 1 205.96 ? C4 G8U 503 C 1 
HETATM 6 C C5 G8U . . . W 14 47.46 8.981 14.016 1 191.32 ? C5 G8U 503 C 1 
HETATM 7 C C6 G8U . . . W 14 47.427 7.622 13.807 1 184.74 ? C6 G8U 503 C 1 
HETATM 8 C C7 G8U . . . W 14 46.397 6.847 14.305 1 182.99 ? C7 G8U 503 C 1 
HETATM 9 C C8 G8U . . . W 14 45.383 7.453 15.027 1 197.14 ? C8 G8U 503 C 1 
HETATM 10 C C9 G8U . . . W 14 45.408 8.824 15.24 1 211.38 ? C9 G8U 503 C 1 
HETATM 11 O O10 G8U . . . W 14 48.429 7.063 13.09 1 186.63 ? O10 G8U 503 C 1 
HETATM 12 C C11 G8U . . . W 14 49.699 7.499 13.267 1 176.54 ? C11 G8U 503 C 1 
HETATM 13 C C12 G8U . . . W 14 49.962 8.786 13.696 1 178.08 ? C12 G8U 503 C 1 
HETATM 14 C C13 G8U . . . W 14 51.274 9.201 13.862 1 171.05 ? C13 G8U 503 C 1 
HETATM 15 C C14 G8U . . . W 14 52.292 8.311 13.593 1 162.68 ? C14 G8U 503 C 1 
HETATM 16 C C15 G8U . . . W 14 52.019 7.031 13.162 1 164.63 ? C15 G8U 503 C 1 
HETATM 17 C C16 G8U . . . W 14 50.718 6.619 13 1 167.97 ? C16 G8U 503 C 1 
HETATM 18 C C17 G8U . . . W 14 53.704 8.675 13.744 1 154.12 ? C17 G8U 503 C 1 
HETATM 19 C C18 G8U . . . W 14 54.556 7.856 14.616 1 139.45 ? C18 G8U 503 C 1 
HETATM 20 C C19 G8U . . . W 14 55.95 8.255 14.722 1 147.33 ? C19 G8U 503 C 1 
HETATM 21 C C20 G8U . . . W 14 56.429 9.431 13.96 1 150.92 ? C20 G8U 503 C 1 
HETATM 22 C C22 G8U . . . W 14 54.302 9.823 13.036 1 148.35 ? C22 G8U 503 C 1 
HETATM 23 O O23 G8U . . . W 14 54.151 6.868 15.258 1 159.29 ? O23 G8U 503 C 1 
HETATM 24 C C24 G8U . . . W 14 53.447 10.668 12.132 1 189.38 ? C24 G8U 503 C 1 
HETATM 25 O O25 G8U . . . W 14 54.276 11.65 11.506 1 128.6 ? O25 G8U 503 C 1 
HETATM 26 CL CL G8U . . . W 14 56.959 7.256 15.79 1 140.35 ? CL G8U 503 C 1 
HETATM 27 C C27 G8U . . . W 14 57.86 9.865 14.05 1 128.6 ? C27 G8U 503 C 1 
HETATM 28 N N28 G8U . . . W 14 55.592 10.127 13.183 1 140.35 ? N28 G8U 503 C 1 
HETATM 29 O O29 G8U . . . W 14 46.488 10.929 14.926 1 200.33 ? O29 G8U 503 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           29 
#