data_4D6U # _model_server_result.job_id rgscQohxai0kLFWSbQjKdw _model_server_result.datetime_utc '2024-11-24 16:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":503}' # _entry.id 4D6U # _exptl.entry_id 4D6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.786 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-chloro-6-(hydroxymethyl)-2-methyl-5-{4-[3-(trifluoromethoxy)phenoxy]phenyl}pyridin-4-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D6U _cell.length_a 129.49 _cell.length_b 129.49 _cell.length_c 719.936 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS decameric 10 software_defined_assembly 1 PQS decameric 10 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 1 1 K,L,M,N,O,P,Q,R,S,T,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 W N N ? 14 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 H SG CYS 37 H CYS 24 1_555 H SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 H SG CYS 53 H CYS 40 1_555 H SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 O SG CYS 222 R CYS 144 1_555 O SG CYS 238 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 R SG CYS 37 U CYS 24 1_555 R SG CYS 81 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 R SG CYS 53 U CYS 40 1_555 R SG CYS 67 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 C NE2 HIS 201 C HIS 201 1_555 W O25 G8U . C G8U 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? covale ? covale2 M NE2 HIS 201 P HIS 201 1_555 LA O25 G8U . P G8U 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 D NE2 HIS 125 D HIS 41 1_555 Z FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc6 D SD MET 244 D MET 160 1_555 Z FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc7 M NE2 HIS 83 P HIS 83 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc8 M NE2 HIS 97 P HIS 97 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 M NE2 HIS 182 P HIS 182 1_555 JA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc10 M NE2 HIS 196 P HIS 196 1_555 KA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 N NE2 HIS 125 Q HIS 41 1_555 OA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc12 N SD MET 244 Q MET 160 1_555 OA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc13 O SG CYS 236 R CYS 158 1_555 RA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula 'C20 H15 Cl F3 N O4' _chem_comp.formula_weight 425.786 _chem_comp.id G8U _chem_comp.mon_nstd_flag . _chem_comp.name 3-chloro-6-(hydroxymethyl)-2-methyl-5-{4-[3-(trifluoromethoxy)phenoxy]phenyl}pyridin-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 F1 G8U sing 342 n n C1 F2 G8U sing 343 n n C1 F3 G8U sing 344 n n C1 O29 G8U sing 345 n n C4 C5 G8U sing 346 n y C4 C9 G8U doub 347 n y C4 O29 G8U sing 348 n n C5 C6 G8U doub 349 n y C6 C7 G8U sing 350 n y C6 O10 G8U sing 351 n n C7 C8 G8U doub 352 n y C8 C9 G8U sing 353 n y O10 C11 G8U sing 354 n n C11 C12 G8U sing 355 n y C11 C16 G8U doub 356 n y C12 C13 G8U doub 357 n y C13 C14 G8U sing 358 n y C14 C15 G8U doub 359 n y C14 C17 G8U sing 360 n n C15 C16 G8U sing 361 n y C17 C18 G8U sing 362 n y C17 C22 G8U doub 363 n y C18 C19 G8U doub 364 n y C18 O23 G8U sing 365 n n C19 C20 G8U sing 366 n y C19 CL G8U sing 367 n n C20 C27 G8U sing 368 n n C20 N28 G8U doub 369 n y C22 C24 G8U sing 370 n n C22 N28 G8U sing 371 n y C24 O25 G8U sing 372 n n C5 H5 G8U sing 373 n n C9 H9 G8U sing 374 n n C7 H7 G8U sing 375 n n C8 H8 G8U sing 376 n n C12 H12 G8U sing 377 n n C16 H16 G8U sing 378 n n C13 H13 G8U sing 379 n n C15 H15 G8U sing 380 n n O23 H23 G8U sing 381 n n C27 H271 G8U sing 382 n n C27 H272 G8U sing 383 n n C27 H273 G8U sing 384 n n C24 H241 G8U sing 385 n n C24 H242 G8U sing 386 n n O25 H25 G8U sing 387 n n # _atom_sites.entry_id 4D6U _atom_sites.fract_transf_matrix[1][1] 0.007723 _atom_sites.fract_transf_matrix[1][2] 0.004459 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 13 HEM C 1 501 501 HEM HEM . V 13 HEM C 1 502 502 HEM HEM . W 14 G8U C 1 503 503 G8U G8U . X 15 PO4 C 1 504 504 PO4 PO4 . Y 16 PEE C 1 505 505 PEE PEE . Z 17 HEC D 1 501 501 HEC HEC . AA 15 PO4 D 1 502 502 PO4 PO4 . BA 15 PO4 D 1 503 503 PO4 PO4 . CA 15 PO4 D 1 504 504 PO4 PO4 . DA 18 CDL D 1 505 505 CDL CDL . EA 16 PEE D 1 506 506 PEE PEE . FA 15 PO4 E 1 501 501 PO4 PO4 . GA 15 PO4 F 1 501 501 PO4 PO4 . HA 18 CDL G 1 501 501 CDL CDL . IA 15 PO4 N 1 501 501 PO4 PO4 . JA 13 HEM P 1 501 501 HEM HEM . KA 13 HEM P 1 502 502 HEM HEM . LA 14 G8U P 1 503 503 G8U G8U . MA 15 PO4 P 1 504 504 PO4 PO4 . NA 16 PEE P 1 505 505 PEE PEE . OA 17 HEC Q 1 501 501 HEC HEC . PA 18 CDL Q 1 505 505 CDL CDL . QA 16 PEE Q 1 506 506 PEE PEE . RA 19 FES R 1 501 501 FES FES . SA 20 GOL R 1 502 502 GOL GOL . TA 15 PO4 S 1 501 501 PO4 PO4 . UA 18 CDL T 1 501 501 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G8U . . . W 14 45.324 11.716 14.722 1 207.27 ? C1 G8U 503 C 1 HETATM 2 F F1 G8U . . . W 14 44.506 11.175 13.849 1 230.57 ? F1 G8U 503 C 1 HETATM 3 F F2 G8U . . . W 14 44.685 11.866 15.858 1 215.08 ? F2 G8U 503 C 1 HETATM 4 F F3 G8U . . . W 14 45.7 12.886 14.271 1 190.73 ? F3 G8U 503 C 1 HETATM 5 C C4 G8U . . . W 14 46.448 9.583 14.728 1 205.96 ? C4 G8U 503 C 1 HETATM 6 C C5 G8U . . . W 14 47.46 8.981 14.016 1 191.32 ? C5 G8U 503 C 1 HETATM 7 C C6 G8U . . . W 14 47.427 7.622 13.807 1 184.74 ? C6 G8U 503 C 1 HETATM 8 C C7 G8U . . . W 14 46.397 6.847 14.305 1 182.99 ? C7 G8U 503 C 1 HETATM 9 C C8 G8U . . . W 14 45.383 7.453 15.027 1 197.14 ? C8 G8U 503 C 1 HETATM 10 C C9 G8U . . . W 14 45.408 8.824 15.24 1 211.38 ? C9 G8U 503 C 1 HETATM 11 O O10 G8U . . . W 14 48.429 7.063 13.09 1 186.63 ? O10 G8U 503 C 1 HETATM 12 C C11 G8U . . . W 14 49.699 7.499 13.267 1 176.54 ? C11 G8U 503 C 1 HETATM 13 C C12 G8U . . . W 14 49.962 8.786 13.696 1 178.08 ? C12 G8U 503 C 1 HETATM 14 C C13 G8U . . . W 14 51.274 9.201 13.862 1 171.05 ? C13 G8U 503 C 1 HETATM 15 C C14 G8U . . . W 14 52.292 8.311 13.593 1 162.68 ? C14 G8U 503 C 1 HETATM 16 C C15 G8U . . . W 14 52.019 7.031 13.162 1 164.63 ? C15 G8U 503 C 1 HETATM 17 C C16 G8U . . . W 14 50.718 6.619 13 1 167.97 ? C16 G8U 503 C 1 HETATM 18 C C17 G8U . . . W 14 53.704 8.675 13.744 1 154.12 ? C17 G8U 503 C 1 HETATM 19 C C18 G8U . . . W 14 54.556 7.856 14.616 1 139.45 ? C18 G8U 503 C 1 HETATM 20 C C19 G8U . . . W 14 55.95 8.255 14.722 1 147.33 ? C19 G8U 503 C 1 HETATM 21 C C20 G8U . . . W 14 56.429 9.431 13.96 1 150.92 ? C20 G8U 503 C 1 HETATM 22 C C22 G8U . . . W 14 54.302 9.823 13.036 1 148.35 ? C22 G8U 503 C 1 HETATM 23 O O23 G8U . . . W 14 54.151 6.868 15.258 1 159.29 ? O23 G8U 503 C 1 HETATM 24 C C24 G8U . . . W 14 53.447 10.668 12.132 1 189.38 ? C24 G8U 503 C 1 HETATM 25 O O25 G8U . . . W 14 54.276 11.65 11.506 1 128.6 ? O25 G8U 503 C 1 HETATM 26 CL CL G8U . . . W 14 56.959 7.256 15.79 1 140.35 ? CL G8U 503 C 1 HETATM 27 C C27 G8U . . . W 14 57.86 9.865 14.05 1 128.6 ? C27 G8U 503 C 1 HETATM 28 N N28 G8U . . . W 14 55.592 10.127 13.183 1 140.35 ? N28 G8U 503 C 1 HETATM 29 O O29 G8U . . . W 14 46.488 10.929 14.926 1 200.33 ? O29 G8U 503 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #