data_4D75 # _model_server_result.job_id YfB6yjKgJQ2Wkwj-n6xrcA _model_server_result.datetime_utc '2024-12-21 16:48:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 4D75 # _exptl.entry_id 4D75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl {6-oxo-6-[(pyridin-3-ylmethyl)amino]hexyl}carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D75 _cell.length_a 77.09 _cell.length_b 99.75 _cell.length_c 131.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 B N22 PK9 . A PK9 600 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? # _chem_comp.formula 'C17 H27 N3 O3' _chem_comp.formula_weight 321.415 _chem_comp.id PK9 _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl {6-oxo-6-[(pyridin-3-ylmethyl)amino]hexyl}carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C14 PK9 doub 342 n n C14 N16 PK9 sing 343 n n C14 C13 PK9 sing 344 n n N16 C17 PK9 sing 345 n n C17 C18 PK9 sing 346 n n C18 C23 PK9 sing 347 n y C18 C19 PK9 doub 348 n y C23 N22 PK9 doub 349 n y N22 C21 PK9 sing 350 n y C21 C20 PK9 doub 351 n y C20 C19 PK9 sing 352 n y C13 C12 PK9 sing 353 n n C12 C11 PK9 sing 354 n n C11 C10 PK9 sing 355 n n C10 C09 PK9 sing 356 n n C09 N08 PK9 sing 357 n n N08 C06 PK9 sing 358 n n C06 O07 PK9 doub 359 n n C06 O05 PK9 sing 360 n n O05 C02 PK9 sing 361 n n C02 C04 PK9 sing 362 n n C02 C03 PK9 sing 363 n n C02 C01 PK9 sing 364 n n N16 H16 PK9 sing 365 n n C13 H131 PK9 sing 366 n n C13 H132 PK9 sing 367 n n C17 H171 PK9 sing 368 n n C17 H172 PK9 sing 369 n n C23 H23 PK9 sing 370 n n C19 H19 PK9 sing 371 n n C21 H21 PK9 sing 372 n n C20 H20 PK9 sing 373 n n C12 H121 PK9 sing 374 n n C12 H122 PK9 sing 375 n n C11 H111 PK9 sing 376 n n C11 H112 PK9 sing 377 n n C10 H101 PK9 sing 378 n n C10 H102 PK9 sing 379 n n C09 H091 PK9 sing 380 n n C09 H092 PK9 sing 381 n n N08 H08 PK9 sing 382 n n C04 H041 PK9 sing 383 n n C04 H042 PK9 sing 384 n n C04 H043 PK9 sing 385 n n C03 H031 PK9 sing 386 n n C03 H032 PK9 sing 387 n n C03 H033 PK9 sing 388 n n C01 H011 PK9 sing 389 n n C01 H012 PK9 sing 390 n n C01 H013 PK9 sing 391 n n # _atom_sites.entry_id 4D75 _atom_sites.fract_transf_matrix[1][1] 0.012972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PK9 A 1 600 600 PK9 PK9 . C 3 HEM A 1 601 601 HEM HEM . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O15 PK9 . . . B 2 -23.493 -21.483 -14.522 1 95.19 ? O15 PK9 600 A 1 HETATM 2 C C14 PK9 . . . B 2 -23.039 -20.564 -13.853 1 96.54 ? C14 PK9 600 A 1 HETATM 3 N N16 PK9 . . . B 2 -22.092 -20.76 -12.927 1 89.8 ? N16 PK9 600 A 1 HETATM 4 C C17 PK9 . . . B 2 -20.849 -21.467 -13.229 1 77.84 ? C17 PK9 600 A 1 HETATM 5 C C18 PK9 . . . B 2 -20.056 -21.821 -11.981 1 70.09 ? C18 PK9 600 A 1 HETATM 6 C C23 PK9 . . . B 2 -18.733 -22.258 -12.086 1 62.33 ? C23 PK9 600 A 1 HETATM 7 N N22 PK9 . . . B 2 -18.014 -22.584 -11.002 1 56.87 ? N22 PK9 600 A 1 HETATM 8 C C21 PK9 . . . B 2 -18.534 -22.483 -9.784 1 72.51 ? C21 PK9 600 A 1 HETATM 9 C C20 PK9 . . . B 2 -19.851 -22.045 -9.61 1 78.83 ? C20 PK9 600 A 1 HETATM 10 C C19 PK9 . . . B 2 -20.626 -21.722 -10.717 1 75.15 ? C19 PK9 600 A 1 HETATM 11 C C13 PK9 . . . B 2 -23.568 -19.158 -14.086 1 100.83 ? C13 PK9 600 A 1 HETATM 12 C C12 PK9 . . . B 2 -23.045 -18.124 -13.089 1 105.97 ? C12 PK9 600 A 1 HETATM 13 C C11 PK9 . . . B 2 -21.638 -17.634 -13.438 1 107.55 ? C11 PK9 600 A 1 HETATM 14 C C10 PK9 . . . B 2 -20.824 -17.444 -12.159 1 104.74 ? C10 PK9 600 A 1 HETATM 15 C C09 PK9 . . . B 2 -19.382 -17.933 -12.291 1 98.32 ? C09 PK9 600 A 1 HETATM 16 N N08 PK9 . . . B 2 -18.826 -18.381 -11.018 1 99.01 ? N08 PK9 600 A 1 HETATM 17 C C06 PK9 . . . B 2 -19.092 -17.787 -9.849 1 100.5 ? C06 PK9 600 A 1 HETATM 18 O O07 PK9 . . . B 2 -19.071 -16.57 -9.702 1 95.69 ? O07 PK9 600 A 1 HETATM 19 O O05 PK9 . . . B 2 -19.386 -18.657 -8.705 1 100.41 ? O05 PK9 600 A 1 HETATM 20 C C02 PK9 . . . B 2 -20.653 -18.67 -8.013 1 96.09 ? C02 PK9 600 A 1 HETATM 21 C C04 PK9 . . . B 2 -20.969 -17.332 -7.334 1 99.45 ? C04 PK9 600 A 1 HETATM 22 C C03 PK9 . . . B 2 -21.752 -18.999 -9.016 1 96.33 ? C03 PK9 600 A 1 HETATM 23 C C01 PK9 . . . B 2 -20.549 -19.761 -6.961 1 82.66 ? C01 PK9 600 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #