data_4D75
#
_model_server_result.job_id            yRzCTeBvL2hzoM4_AYjSkQ 
_model_server_result.datetime_utc      '2024-12-21 16:44:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d75 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4D75 
#
_exptl.entry_id    4D75 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4D75 
_cell.length_a            77.09 
_cell.length_b            99.75 
_cell.length_c            131.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D75 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc2 B N22 PK9 . A PK9 600 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     4D75 
_atom_sites.fract_transf_matrix[1][1]    0.012972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010025 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007607 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PK9 A 1 600 600 PK9 PK9 . 
C 3 HEM A 1 601 601 HEM HEM . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 -15.21 -19.646 -10.441 1 40.52 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . C 3 -15.914 -22.396 -14.334 1 48.22 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . C 3 -16.419 -26.266 -11.451 1 46.62 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . C 3 -15.449 -23.62 -7.596 1 46.15 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . C 3 -15.382 -20.056 -11.739 1 42.91 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . C 3 -15.302 -19.194 -12.905 1 45.58 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . C 3 -15.497 -19.954 -13.991 1 47.08 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . C 3 -15.692 -21.314 -13.532 1 44.85 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . C 3 -15.511 -19.507 -15.48 1 37.6 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . C 3 -15.052 -17.675 -12.848 1 40.52 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . C 3 -13.534 -17.451 -12.961 1 44.61 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . C 3 -13.227 -16.001 -13.203 1 42.74 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . C 3 -12.143 -15.732 -13.757 1 40.06 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . C 3 -14.045 -15.102 -12.859 1 42.82 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . C 3 -16.116 -23.667 -13.868 1 45.52 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . C 3 -16.419 -24.796 -14.71 1 41.86 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . C 3 -16.564 -25.88 -13.923 1 47.03 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . C 3 -16.365 -25.444 -12.552 1 44.71 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . C 3 -16.515 -24.649 -16.243 1 41.48 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . C 3 -16.894 -27.346 -14.302 1 47.56 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . C 3 -16.874 -27.824 -15.556 1 47.24 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . C 3 -16.12 -25.932 -10.155 1 36.71 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . C 3 -15.925 -26.83 -9.015 1 47.99 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . C 3 -15.652 -26.068 -7.944 1 50.64 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . C 3 -15.657 -24.695 -8.403 1 48.05 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . C 3 -16.031 -28.383 -9.078 1 43.97 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . C 3 -15.348 -26.401 -6.451 1 45.51 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . C 3 -15.228 -27.625 -5.948 1 57.68 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . C 3 -15.359 -22.323 -8.018 1 49.34 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . C 3 -15.172 -21.233 -7.107 1 49.26 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . C 3 -15.086 -19.99 -7.985 1 50.54 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . C 3 -15.211 -20.465 -9.343 1 42.19 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . C 3 -15.083 -21.296 -5.579 1 44.4 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . C 3 -14.857 -18.562 -7.493 1 42.82 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . C 3 -13.346 -18.469 -7.202 1 48.54 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . C 3 -13.044 -17.155 -6.511 1 47.5 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . C 3 -13.837 -16.204 -6.689 1 54.79 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . C 3 -12.016 -17.05 -5.787 1 49.23 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . C 3 -15.62 -21.347 -12.156 1 39.86 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . C 3 -16.097 -24.084 -12.557 1 44.14 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . C 3 -15.949 -24.64 -9.743 1 48.02 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . C 3 -15.379 -21.846 -9.324 1 36.08 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . C 3 -15.67 -22.987 -10.943 1 43.79 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#