data_4D78
#
_model_server_result.job_id            84GoBrZoZePt2pn1BrwIMg 
_model_server_result.datetime_utc      '2024-12-22 04:23:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1600}' 
#
_entry.id    4D78 
#
_exptl.entry_id    4D78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              429.576 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2S)-1-({3-oxo-3-[(pyridin-3-ylmethyl)amino]propyl}sulfanyl)-3-phenylpropan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4D78 
_cell.length_a            75.92 
_cell.length_b            100.36 
_cell.length_c            124.75 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc2 B FE HEM . A HEM 1500 1_555 C N22 J9K . A J9K 1600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
#
_chem_comp.formula           'C23 H31 N3 O3 S' 
_chem_comp.formula_weight    429.576 
_chem_comp.id                J9K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2S)-1-({3-oxo-3-[(pyridin-3-ylmethyl)amino]propyl}sulfanyl)-3-phenylpropan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 J9K sing 268 n n 
C02 C03 J9K sing 269 n n 
C02 C04 J9K sing 270 n n 
C02 O05 J9K sing 271 n n 
O05 C06 J9K sing 272 n n 
C06 O07 J9K doub 273 n n 
C06 N08 J9K sing 274 n n 
N08 C09 J9K sing 275 n n 
C09 C10 J9K sing 276 n n 
C09 C24 J9K sing 277 n n 
C10 S11 J9K sing 278 n n 
S11 C12 J9K sing 279 n n 
C12 C13 J9K sing 280 n n 
C13 C14 J9K sing 281 n n 
C14 O15 J9K doub 282 n n 
C14 N16 J9K sing 283 n n 
N16 C17 J9K sing 284 n n 
C17 C18 J9K sing 285 n n 
C18 C19 J9K doub 286 n y 
C18 C23 J9K sing 287 n y 
C19 C20 J9K sing 288 n y 
C20 C21 J9K doub 289 n y 
C21 N22 J9K sing 290 n y 
N22 C23 J9K doub 291 n y 
C24 C25 J9K sing 292 n n 
C25 C26 J9K doub 293 n y 
C25 C30 J9K sing 294 n y 
C26 C27 J9K sing 295 n y 
C27 C28 J9K doub 296 n y 
C28 C29 J9K sing 297 n y 
C29 C30 J9K doub 298 n y 
C01 H01 J9K sing 299 n n 
C01 H01A J9K sing 300 n n 
C01 H01B J9K sing 301 n n 
C03 H03 J9K sing 302 n n 
C03 H03A J9K sing 303 n n 
C03 H03B J9K sing 304 n n 
C04 H04 J9K sing 305 n n 
C04 H04A J9K sing 306 n n 
C04 H04B J9K sing 307 n n 
N08 HN08 J9K sing 308 n n 
C09 H09 J9K sing 309 n n 
C10 H10 J9K sing 310 n n 
C10 H10A J9K sing 311 n n 
C12 H12 J9K sing 312 n n 
C12 H12A J9K sing 313 n n 
C13 H13 J9K sing 314 n n 
C13 H13A J9K sing 315 n n 
N16 HN16 J9K sing 316 n n 
C17 H17 J9K sing 317 n n 
C17 H17A J9K sing 318 n n 
C19 H19 J9K sing 319 n n 
C20 H20 J9K sing 320 n n 
C21 H21 J9K sing 321 n n 
C23 H23 J9K sing 322 n n 
C24 H24 J9K sing 323 n n 
C24 H24A J9K sing 324 n n 
C26 H26 J9K sing 325 n n 
C27 H27 J9K sing 326 n n 
C28 H28 J9K sing 327 n n 
C29 H29 J9K sing 328 n n 
C30 H30 J9K sing 329 n n 
#
_atom_sites.entry_id                     4D78 
_atom_sites.fract_transf_matrix[1][1]    0.013172 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008016 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 1500 1500 HEM HEM . 
C 3 J9K A 1 1600 1600 J9K J9K . 
D 4 GOL A 1 1601 1601 GOL GOL . 
E 4 GOL A 1 1602 1602 GOL GOL . 
F 5 HOH A 1 2001 2001 HOH HOH . 
F 5 HOH A 2 2002 2002 HOH HOH . 
F 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH A 4 2004 2004 HOH HOH . 
F 5 HOH A 5 2005 2005 HOH HOH . 
F 5 HOH A 6 2006 2006 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 J9K . . . C 3 -24.248 31.291 -3.187 1 163.04 ? C01 J9K 1600 A 1 
HETATM 2 C C02 J9K . . . C 3 -24.628 30.079 -4.013 1 166.75 ? C02 J9K 1600 A 1 
HETATM 3 C C03 J9K . . . C 3 -23.951 28.835 -3.453 1 166.65 ? C03 J9K 1600 A 1 
HETATM 4 C C04 J9K . . . C 3 -26.112 29.905 -3.85 1 170.86 ? C04 J9K 1600 A 1 
HETATM 5 O O05 J9K . . . C 3 -24.319 30.194 -5.422 1 158.85 ? O05 J9K 1600 A 1 
HETATM 6 C C06 J9K . . . C 3 -23.307 31.013 -5.994 1 144.59 ? C06 J9K 1600 A 1 
HETATM 7 O O07 J9K . . . C 3 -22.168 30.977 -5.585 1 139.82 ? O07 J9K 1600 A 1 
HETATM 8 N N08 J9K . . . C 3 -23.725 32.077 -6.936 1 134.8 ? N08 J9K 1600 A 1 
HETATM 9 C C09 J9K . . . C 3 -23.18 31.953 -8.283 1 125.06 ? C09 J9K 1600 A 1 
HETATM 10 C C10 J9K . . . C 3 -24.226 31.776 -9.35 1 129.54 ? C10 J9K 1600 A 1 
HETATM 11 S S11 J9K . . . C 3 -23.854 30.665 -10.722 1 133.67 ? S11 J9K 1600 A 1 
HETATM 12 C C12 J9K . . . C 3 -24.374 28.996 -10.303 1 123.57 ? C12 J9K 1600 A 1 
HETATM 13 C C13 J9K . . . C 3 -23.412 27.868 -10.67 1 112.09 ? C13 J9K 1600 A 1 
HETATM 14 C C14 J9K . . . C 3 -22.867 27.821 -12.085 1 98.26 ? C14 J9K 1600 A 1 
HETATM 15 O O15 J9K . . . C 3 -23.602 27.425 -12.989 1 110.33 ? O15 J9K 1600 A 1 
HETATM 16 N N16 J9K . . . C 3 -21.515 28.202 -12.444 1 77.39 ? N16 J9K 1600 A 1 
HETATM 17 C C17 J9K . . . C 3 -20.397 28.712 -11.632 1 63.52 ? C17 J9K 1600 A 1 
HETATM 18 C C18 J9K . . . C 3 -19.68 28.116 -10.429 1 61.43 ? C18 J9K 1600 A 1 
HETATM 19 C C19 J9K . . . C 3 -20.337 27.894 -9.193 1 58.51 ? C19 J9K 1600 A 1 
HETATM 20 C C20 J9K . . . C 3 -19.614 27.441 -8.09 1 58.73 ? C20 J9K 1600 A 1 
HETATM 21 C C21 J9K . . . C 3 -18.258 27.21 -8.208 1 56.94 ? C21 J9K 1600 A 1 
HETATM 22 N N22 J9K . . . C 3 -17.623 27.426 -9.388 1 51.4 ? N22 J9K 1600 A 1 
HETATM 23 C C23 J9K . . . C 3 -18.315 27.874 -10.481 1 60.72 ? C23 J9K 1600 A 1 
HETATM 24 C C24 J9K . . . C 3 -21.997 31 -8.444 1 116.51 ? C24 J9K 1600 A 1 
HETATM 25 C C25 J9K . . . C 3 -20.601 31.571 -8.695 1 112.95 ? C25 J9K 1600 A 1 
HETATM 26 C C26 J9K . . . C 3 -19.565 31.236 -7.832 1 111.76 ? C26 J9K 1600 A 1 
HETATM 27 C C27 J9K . . . C 3 -18.289 31.756 -8.066 1 102.87 ? C27 J9K 1600 A 1 
HETATM 28 C C28 J9K . . . C 3 -18.061 32.595 -9.159 1 94.98 ? C28 J9K 1600 A 1 
HETATM 29 C C29 J9K . . . C 3 -19.095 32.925 -10.021 1 95.99 ? C29 J9K 1600 A 1 
HETATM 30 C C30 J9K . . . C 3 -20.367 32.414 -9.792 1 108.11 ? C30 J9K 1600 A 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           1104 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           30 
#