data_4D7D
#
_model_server_result.job_id            zn5LzLMr4f4eZ8y_Nt8mcA 
_model_server_result.datetime_utc      '2024-11-14 18:50:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d7d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1500}' 
#
_entry.id    4D7D 
#
_exptl.entry_id    4D7D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4D7D 
_cell.length_a            78.138 
_cell.length_b            101.332 
_cell.length_c            127.966 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D7D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc2 B FE HEM . A HEM 1500 1_555 C N22 PKT . A PKT 1600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     4D7D 
_atom_sites.fract_transf_matrix[1][1]    0.012798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009869 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 1500 1500 HEM HEM . 
C 3 PKT A 1 1600 1600 PKT PKT . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.594 19.811 9.526 1 70.77 ? CHA HEM 1500 A 1 
HETATM 2 C CHB HEM . . . B 2 -16.171 22.563 13.625 1 66.08 ? CHB HEM 1500 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.635 26.543 10.887 1 70.81 ? CHC HEM 1500 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.838 23.798 6.737 1 65.6 ? CHD HEM 1500 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.718 20.307 10.871 1 70.07 ? C1A HEM 1500 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.464 19.355 11.978 1 69.39 ? C2A HEM 1500 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.624 20.177 13.166 1 69.38 ? C3A HEM 1500 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.956 21.521 12.656 1 65.18 ? C4A HEM 1500 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.469 19.716 14.581 1 71.45 ? CMA HEM 1500 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.11 17.892 11.925 1 67.26 ? CAA HEM 1500 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.692 17.625 12.432 1 77.59 ? CBA HEM 1500 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.474 16.126 12.563 1 75.36 ? CGA HEM 1500 A 1 
HETATM 13 O O1A HEM . . . B 2 -14.445 15.383 12.354 1 72.18 ? O1A HEM 1500 A 1 
HETATM 14 O O2A HEM . . . B 2 -12.352 15.664 12.876 1 73.07 ? O2A HEM 1500 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.343 23.934 13.201 1 67.25 ? C1B HEM 1500 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.708 24.955 14.208 1 70.24 ? C2B HEM 1500 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.858 26.118 13.347 1 70.75 ? C3B HEM 1500 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.567 25.616 12.005 1 69.44 ? C4B HEM 1500 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.89 24.799 15.698 1 72.75 ? CMB HEM 1500 A 1 
HETATM 20 C CAB HEM . . . B 2 -17.217 27.515 13.692 1 73.28 ? CAB HEM 1500 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.834 28.076 14.821 1 68.29 ? CBB HEM 1500 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.41 26.139 9.509 1 71.41 ? C1C HEM 1500 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.409 27.151 8.429 1 71.3 ? C2C HEM 1500 A 1 
HETATM 24 C C3C HEM . . . B 2 -16.174 26.342 7.223 1 70.51 ? C3C HEM 1500 A 1 
HETATM 25 C C4C HEM . . . B 2 -16.059 24.919 7.641 1 66.78 ? C4C HEM 1500 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.566 28.648 8.55 1 72.78 ? CMC HEM 1500 A 1 
HETATM 27 C CAC HEM . . . B 2 -16.075 26.93 5.866 1 70.81 ? CAC HEM 1500 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.004 26.756 5.14 1 76.75 ? CBC HEM 1500 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.704 22.401 7.184 1 67.55 ? C1D HEM 1500 A 1 
HETATM 30 C C2D HEM . . . B 2 -15.623 21.288 6.188 1 71.14 ? C2D HEM 1500 A 1 
HETATM 31 C C3D HEM . . . B 2 -15.567 20.115 7.061 1 68.97 ? C3D HEM 1500 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.588 20.703 8.396 1 68.6 ? C4D HEM 1500 A 1 
HETATM 33 C CMD HEM . . . B 2 -15.643 21.323 4.679 1 69.84 ? CMD HEM 1500 A 1 
HETATM 34 C CAD HEM . . . B 2 -15.428 18.667 6.746 1 74.32 ? CAD HEM 1500 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.899 18.508 6.705 1 74.74 ? CBD HEM 1500 A 1 
HETATM 36 C CGD HEM . . . B 2 -13.529 17.342 5.826 1 83.44 ? CGD HEM 1500 A 1 
HETATM 37 O O1D HEM . . . B 2 -14.355 16.386 5.766 1 78.58 ? O1D HEM 1500 A 1 
HETATM 38 O O2D HEM . . . B 2 -12.432 17.398 5.197 1 81.2 ? O2D HEM 1500 A 1 
HETATM 39 N NA HEM . . . B 2 -16.159 21.653 11.214 1 63.88 ? NA HEM 1500 A 1 
HETATM 40 N NB HEM . . . B 2 -16.288 24.299 11.903 1 65.78 ? NB HEM 1500 A 1 
HETATM 41 N NC HEM . . . B 2 -16.333 24.752 9.063 1 68.1 ? NC HEM 1500 A 1 
HETATM 42 N ND HEM . . . B 2 -15.726 22.018 8.48 1 62.59 ? ND HEM 1500 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.73 23.243 10.15 1 68.63 ? FE HEM 1500 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#