data_4D7D # _model_server_result.job_id ZGbP_otUircKp2klTr1kAw _model_server_result.datetime_utc '2024-11-14 18:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1600}' # _entry.id 4D7D # _exptl.entry_id 4D7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.612 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2S)-1-(1H-indol-3-yl)-3-({3-oxo-3-[(pyridin-3-ylmethyl)amino]propyl}sulfanyl)propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D7D _cell.length_a 78.138 _cell.length_b 101.332 _cell.length_c 127.966 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 B FE HEM . A HEM 1500 1_555 C N22 PKT . A PKT 1600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'C25 H32 N4 O3 S' _chem_comp.formula_weight 468.612 _chem_comp.id PKT _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2S)-1-(1H-indol-3-yl)-3-({3-oxo-3-[(pyridin-3-ylmethyl)amino]propyl}sulfanyl)propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 PKT sing 342 n n C02 C03 PKT sing 343 n n C02 C04 PKT sing 344 n n C02 O05 PKT sing 345 n n O05 C06 PKT sing 346 n n C06 O07 PKT doub 347 n n C06 N08 PKT sing 348 n n N08 C09 PKT sing 349 n n C09 C10 PKT sing 350 n n C09 C24 PKT sing 351 n n C10 S11 PKT sing 352 n n S11 C12 PKT sing 353 n n C12 C13 PKT sing 354 n n C13 C14 PKT sing 355 n n C14 O15 PKT doub 356 n n C14 N16 PKT sing 357 n n N16 C17 PKT sing 358 n n C17 C18 PKT sing 359 n n C18 C19 PKT doub 360 n y C18 C23 PKT sing 361 n y C19 C20 PKT sing 362 n y C20 C21 PKT doub 363 n y C21 N22 PKT sing 364 n y N22 C23 PKT doub 365 n y C24 C25 PKT sing 366 n n C25 C26 PKT doub 367 n y C25 C33 PKT sing 368 n y C26 N27 PKT sing 369 n y N27 C28 PKT sing 370 n y C28 C29 PKT doub 371 n y C28 C33 PKT sing 372 n y C29 C30 PKT sing 373 n y C30 C31 PKT doub 374 n y C31 C32 PKT sing 375 n y C32 C33 PKT doub 376 n y C01 H01 PKT sing 377 n n C01 H01A PKT sing 378 n n C01 H01B PKT sing 379 n n C03 H03 PKT sing 380 n n C03 H03A PKT sing 381 n n C03 H03B PKT sing 382 n n C04 H04 PKT sing 383 n n C04 H04A PKT sing 384 n n C04 H04B PKT sing 385 n n N08 HN08 PKT sing 386 n n C09 H09 PKT sing 387 n n C10 H10 PKT sing 388 n n C10 H10A PKT sing 389 n n C12 H12 PKT sing 390 n n C12 H12A PKT sing 391 n n C13 H13 PKT sing 392 n n C13 H13A PKT sing 393 n n N16 HN16 PKT sing 394 n n C17 H17 PKT sing 395 n n C17 H17A PKT sing 396 n n C19 H19 PKT sing 397 n n C20 H20 PKT sing 398 n n C21 H21 PKT sing 399 n n C23 H23 PKT sing 400 n n C24 H24 PKT sing 401 n n C24 H24A PKT sing 402 n n C26 H26 PKT sing 403 n n N27 HN27 PKT sing 404 n n C29 H29 PKT sing 405 n n C30 H30 PKT sing 406 n n C31 H31 PKT sing 407 n n C32 H32 PKT sing 408 n n # _atom_sites.entry_id 4D7D _atom_sites.fract_transf_matrix[1][1] 0.012798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1500 1500 HEM HEM . C 3 PKT A 1 1600 1600 PKT PKT . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 PKT . . . C 3 -24.767 19.18 3.492 1 156.78 ? C01 PKT 1600 A 1 HETATM 2 C C02 PKT . . . C 3 -25.254 19.928 4.727 1 166.07 ? C02 PKT 1600 A 1 HETATM 3 C C03 PKT . . . C 3 -26.461 19.193 5.291 1 163.25 ? C03 PKT 1600 A 1 HETATM 4 C C04 PKT . . . C 3 -25.648 21.348 4.347 1 167.22 ? C04 PKT 1600 A 1 HETATM 5 O O05 PKT . . . C 3 -24.201 20.046 5.709 1 161.61 ? O05 PKT 1600 A 1 HETATM 6 C C06 PKT . . . C 3 -23.607 18.934 6.46 1 157.03 ? C06 PKT 1600 A 1 HETATM 7 O O07 PKT . . . C 3 -22.642 18.333 5.989 1 149.2 ? O07 PKT 1600 A 1 HETATM 8 N N08 PKT . . . C 3 -24.161 18.636 7.646 1 150.32 ? N08 PKT 1600 A 1 HETATM 9 C C09 PKT . . . C 3 -23.462 18.635 8.922 1 128.79 ? C09 PKT 1600 A 1 HETATM 10 C C10 PKT . . . C 3 -24.419 18.978 10.06 1 124.32 ? C10 PKT 1600 A 1 HETATM 11 S S11 PKT . . . C 3 -24.786 20.709 10.075 1 117.65 ? S11 PKT 1600 A 1 HETATM 12 C C12 PKT . . . C 3 -24.755 21.35 11.711 1 127.09 ? C12 PKT 1600 A 1 HETATM 13 C C13 PKT . . . C 3 -23.41 21.047 12.373 1 119.38 ? C13 PKT 1600 A 1 HETATM 14 C C14 PKT . . . C 3 -22.834 22.324 12.947 1 111.86 ? C14 PKT 1600 A 1 HETATM 15 O O15 PKT . . . C 3 -23.395 22.923 13.861 1 124.26 ? O15 PKT 1600 A 1 HETATM 16 N N16 PKT . . . C 3 -21.71 22.767 12.391 1 98.97 ? N16 PKT 1600 A 1 HETATM 17 C C17 PKT . . . C 3 -20.506 21.974 12.255 1 81.24 ? C17 PKT 1600 A 1 HETATM 18 C C18 PKT . . . C 3 -19.79 22.348 10.979 1 72.17 ? C18 PKT 1600 A 1 HETATM 19 C C19 PKT . . . C 3 -20.49 22.442 9.78 1 65.08 ? C19 PKT 1600 A 1 HETATM 20 C C20 PKT . . . C 3 -19.774 22.767 8.642 1 69.59 ? C20 PKT 1600 A 1 HETATM 21 C C21 PKT . . . C 3 -18.394 22.988 8.764 1 74.03 ? C21 PKT 1600 A 1 HETATM 22 N N22 PKT . . . C 3 -17.699 22.921 9.919 1 60.66 ? N22 PKT 1600 A 1 HETATM 23 C C23 PKT . . . C 3 -18.41 22.603 11.015 1 71.97 ? C23 PKT 1600 A 1 HETATM 24 C C24 PKT . . . C 3 -22.321 19.641 8.901 1 126.77 ? C24 PKT 1600 A 1 HETATM 25 C C25 PKT . . . C 3 -21.02 18.895 8.918 1 131.23 ? C25 PKT 1600 A 1 HETATM 26 C C26 PKT . . . C 3 -20.091 18.789 7.892 1 137.54 ? C26 PKT 1600 A 1 HETATM 27 N N27 PKT . . . C 3 -19.035 18.024 8.284 1 129.91 ? N27 PKT 1600 A 1 HETATM 28 C C28 PKT . . . C 3 -19.187 17.594 9.549 1 128.53 ? C28 PKT 1600 A 1 HETATM 29 C C29 PKT . . . C 3 -18.439 16.816 10.422 1 141.14 ? C29 PKT 1600 A 1 HETATM 30 C C30 PKT . . . C 3 -18.911 16.554 11.718 1 151.03 ? C30 PKT 1600 A 1 HETATM 31 C C31 PKT . . . C 3 -20.131 17.063 12.173 1 144.78 ? C31 PKT 1600 A 1 HETATM 32 C C32 PKT . . . C 3 -20.918 17.856 11.333 1 147.71 ? C32 PKT 1600 A 1 HETATM 33 C C33 PKT . . . C 3 -20.463 18.121 10.042 1 134.59 ? C33 PKT 1600 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #