data_4D7F # _model_server_result.job_id 42ssHl_56c1u4J6g8UAy0Q _model_server_result.datetime_utc '2024-11-04 20:21:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1245}' # _entry.id 4D7F # _exptl.entry_id 4D7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.517 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-1-({4-[(diaminomethylidene)amino]butyl}amino)-1-oxo-3-phenylpropan-2-yl]-4-hydroxy-2-oxo-1,2-dihydroquinoline-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D7F _cell.length_a 121.293 _cell.length_b 121.293 _cell.length_c 121.293 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C24 H28 N6 O4' _chem_comp.formula_weight 464.517 _chem_comp.id IXA _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-1-({4-[(diaminomethylidene)amino]butyl}amino)-1-oxo-3-phenylpropan-2-yl]-4-hydroxy-2-oxo-1,2-dihydroquinoline-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4D7F _atom_sites.fract_transf_matrix[1][1] 0.008244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1244 1244 GOL GOL . C 3 IXA A 1 1245 1245 IXA IXA . D 4 SO4 A 1 1246 1246 SO4 SO4 . E 4 SO4 A 1 1247 1247 SO4 SO4 . F 4 SO4 A 1 1248 1248 SO4 SO4 . G 4 SO4 A 1 1249 1249 SO4 SO4 . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . H 5 HOH A 10 2010 2010 HOH HOH . H 5 HOH A 11 2011 2011 HOH HOH . H 5 HOH A 12 2012 2012 HOH HOH . H 5 HOH A 13 2013 2013 HOH HOH . H 5 HOH A 14 2014 2014 HOH HOH . H 5 HOH A 15 2015 2015 HOH HOH . H 5 HOH A 16 2016 2016 HOH HOH . H 5 HOH A 17 2017 2017 HOH HOH . H 5 HOH A 18 2018 2018 HOH HOH . H 5 HOH A 19 2019 2019 HOH HOH . H 5 HOH A 20 2020 2020 HOH HOH . H 5 HOH A 21 2021 2021 HOH HOH . H 5 HOH A 22 2022 2022 HOH HOH . H 5 HOH A 23 2023 2023 HOH HOH . H 5 HOH A 24 2024 2024 HOH HOH . H 5 HOH A 25 2025 2025 HOH HOH . H 5 HOH A 26 2026 2026 HOH HOH . H 5 HOH A 27 2027 2027 HOH HOH . H 5 HOH A 28 2028 2028 HOH HOH . H 5 HOH A 29 2029 2029 HOH HOH . H 5 HOH A 30 2030 2030 HOH HOH . H 5 HOH A 31 2031 2031 HOH HOH . H 5 HOH A 32 2032 2032 HOH HOH . H 5 HOH A 33 2033 2033 HOH HOH . H 5 HOH A 34 2034 2034 HOH HOH . H 5 HOH A 35 2035 2035 HOH HOH . H 5 HOH A 36 2036 2036 HOH HOH . H 5 HOH A 37 2037 2037 HOH HOH . H 5 HOH A 38 2038 2038 HOH HOH . H 5 HOH A 39 2039 2039 HOH HOH . H 5 HOH A 40 2040 2040 HOH HOH . H 5 HOH A 41 2041 2041 HOH HOH . H 5 HOH A 42 2042 2042 HOH HOH . H 5 HOH A 43 2043 2043 HOH HOH . H 5 HOH A 44 2044 2044 HOH HOH . H 5 HOH A 45 2045 2045 HOH HOH . H 5 HOH A 46 2046 2046 HOH HOH . H 5 HOH A 47 2047 2047 HOH HOH . H 5 HOH A 48 2048 2048 HOH HOH . H 5 HOH A 49 2049 2049 HOH HOH . H 5 HOH A 50 2050 2050 HOH HOH . H 5 HOH A 51 2051 2051 HOH HOH . H 5 HOH A 52 2052 2052 HOH HOH . H 5 HOH A 53 2053 2053 HOH HOH . H 5 HOH A 54 2054 2054 HOH HOH . H 5 HOH A 55 2055 2055 HOH HOH . H 5 HOH A 56 2056 2056 HOH HOH . H 5 HOH A 57 2057 2057 HOH HOH . H 5 HOH A 58 2058 2058 HOH HOH . H 5 HOH A 59 2059 2059 HOH HOH . H 5 HOH A 60 2060 2060 HOH HOH . H 5 HOH A 61 2061 2061 HOH HOH . H 5 HOH A 62 2062 2062 HOH HOH . H 5 HOH A 63 2063 2063 HOH HOH . H 5 HOH A 64 2064 2064 HOH HOH . H 5 HOH A 65 2065 2065 HOH HOH . H 5 HOH A 66 2066 2066 HOH HOH . H 5 HOH A 67 2067 2067 HOH HOH . H 5 HOH A 68 2068 2068 HOH HOH . H 5 HOH A 69 2069 2069 HOH HOH . H 5 HOH A 70 2070 2070 HOH HOH . H 5 HOH A 71 2071 2071 HOH HOH . H 5 HOH A 72 2072 2072 HOH HOH . H 5 HOH A 73 2073 2073 HOH HOH . H 5 HOH A 74 2074 2074 HOH HOH . H 5 HOH A 75 2075 2075 HOH HOH . H 5 HOH A 76 2076 2076 HOH HOH . H 5 HOH A 77 2077 2077 HOH HOH . H 5 HOH A 78 2078 2078 HOH HOH . H 5 HOH A 79 2079 2079 HOH HOH . H 5 HOH A 80 2080 2080 HOH HOH . H 5 HOH A 81 2081 2081 HOH HOH . H 5 HOH A 82 2082 2082 HOH HOH . H 5 HOH A 83 2083 2083 HOH HOH . H 5 HOH A 84 2084 2084 HOH HOH . H 5 HOH A 85 2085 2085 HOH HOH . H 5 HOH A 86 2086 2086 HOH HOH . H 5 HOH A 87 2087 2087 HOH HOH . H 5 HOH A 88 2088 2088 HOH HOH . H 5 HOH A 89 2089 2089 HOH HOH . H 5 HOH A 90 2090 2090 HOH HOH . H 5 HOH A 91 2091 2091 HOH HOH . H 5 HOH A 92 2092 2092 HOH HOH . H 5 HOH A 93 2093 2093 HOH HOH . H 5 HOH A 94 2094 2094 HOH HOH . H 5 HOH A 95 2095 2095 HOH HOH . H 5 HOH A 96 2096 2096 HOH HOH . H 5 HOH A 97 2097 2097 HOH HOH . H 5 HOH A 98 2098 2098 HOH HOH . H 5 HOH A 99 2099 2099 HOH HOH . H 5 HOH A 100 2100 2100 HOH HOH . H 5 HOH A 101 2101 2101 HOH HOH . H 5 HOH A 102 2102 2102 HOH HOH . H 5 HOH A 103 2103 2103 HOH HOH . H 5 HOH A 104 2104 2104 HOH HOH . H 5 HOH A 105 2105 2105 HOH HOH . H 5 HOH A 106 2106 2106 HOH HOH . H 5 HOH A 107 2107 2107 HOH HOH . H 5 HOH A 108 2108 2108 HOH HOH . H 5 HOH A 109 2109 2109 HOH HOH . H 5 HOH A 110 2110 2110 HOH HOH . H 5 HOH A 111 2111 2111 HOH HOH . H 5 HOH A 112 2112 2112 HOH HOH . H 5 HOH A 113 2113 2113 HOH HOH . H 5 HOH A 114 2114 2114 HOH HOH . H 5 HOH A 115 2115 2115 HOH HOH . H 5 HOH A 116 2116 2116 HOH HOH . H 5 HOH A 117 2117 2117 HOH HOH . H 5 HOH A 118 2118 2118 HOH HOH . H 5 HOH A 119 2119 2119 HOH HOH . H 5 HOH A 120 2120 2120 HOH HOH . H 5 HOH A 121 2121 2121 HOH HOH . H 5 HOH A 122 2122 2122 HOH HOH . H 5 HOH A 123 2123 2123 HOH HOH . H 5 HOH A 124 2124 2124 HOH HOH . H 5 HOH A 125 2125 2125 HOH HOH . H 5 HOH A 126 2126 2126 HOH HOH . H 5 HOH A 127 2127 2127 HOH HOH . H 5 HOH A 128 2128 2128 HOH HOH . H 5 HOH A 129 2129 2129 HOH HOH . H 5 HOH A 130 2130 2130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 IXA . . . C 3 -26.245 -55.278 -9.483 1 31.48 ? C25 IXA 1245 A 1 HETATM 2 O O26 IXA . . . C 3 -25.422 -56.128 -9.831 1 32.93 ? O26 IXA 1245 A 1 HETATM 3 C C27 IXA . . . C 3 -27.216 -55.615 -8.426 1 31.38 ? C27 IXA 1245 A 1 HETATM 4 C C28 IXA . . . C 3 -28.42 -54.933 -8.319 1 30.31 ? C28 IXA 1245 A 1 HETATM 5 C C29 IXA . . . C 3 -29.31 -55.291 -7.326 1 29.46 ? C29 IXA 1245 A 1 HETATM 6 C C30 IXA . . . C 3 -29.007 -56.318 -6.455 1 30.83 ? C30 IXA 1245 A 1 HETATM 7 C C31 IXA . . . C 3 -27.814 -56.999 -6.56 1 31.57 ? C31 IXA 1245 A 1 HETATM 8 C C32 IXA . . . C 3 -26.919 -56.644 -7.553 1 31.7 ? C32 IXA 1245 A 1 HETATM 9 C C33 IXA . . . C 3 -27.551 -58.075 -5.618 1 33.95 ? C33 IXA 1245 A 1 HETATM 10 C C34 IXA . . . C 3 -28.412 -58.424 -4.652 1 32.21 ? C34 IXA 1245 A 1 HETATM 11 C C35 IXA . . . C 3 -29.7 -57.692 -4.538 1 32.92 ? C35 IXA 1245 A 1 HETATM 12 O O36 IXA . . . C 3 -30.504 -58.004 -3.667 1 33.77 ? O36 IXA 1245 A 1 HETATM 13 N N37 IXA . . . C 3 -29.913 -56.682 -5.453 1 29.79 ? N37 IXA 1245 A 1 HETATM 14 O O38 IXA . . . C 3 -26.349 -58.716 -5.773 1 35.8 ? O38 IXA 1245 A 1 HETATM 15 N N24 IXA . . . C 3 -26.357 -54.034 -10.075 1 29.58 ? N24 IXA 1245 A 1 HETATM 16 C C22 IXA . . . C 3 -24.805 -52.462 -10.997 1 30.95 ? C22 IXA 1245 A 1 HETATM 17 O O23 IXA . . . C 3 -25.117 -51.641 -10.148 1 29.88 ? O23 IXA 1245 A 1 HETATM 18 C C20 IXA . . . C 3 -26.49 -53.466 -12.478 1 31.35 ? C20 IXA 1245 A 1 HETATM 19 C C17 IXA . . . C 3 -27.731 -54.296 -12.413 1 35.79 ? C17 IXA 1245 A 1 HETATM 20 C C16 IXA . . . C 3 -27.665 -55.673 -12.469 1 38.16 ? C16 IXA 1245 A 1 HETATM 21 C C18 IXA . . . C 3 -28.96 -53.684 -12.289 1 35.75 ? C18 IXA 1245 A 1 HETATM 22 C C15 IXA . . . C 3 -28.808 -56.439 -12.408 1 38.94 ? C15 IXA 1245 A 1 HETATM 23 C C19 IXA . . . C 3 -30.106 -54.447 -12.222 1 39.07 ? C19 IXA 1245 A 1 HETATM 24 C C14 IXA . . . C 3 -30.036 -55.821 -12.289 1 39.83 ? C14 IXA 1245 A 1 HETATM 25 C C3 IXA . . . C 3 -21.135 -48.441 -11.946 1 32.99 ? C3 IXA 1245 A 1 HETATM 26 C C4 IXA . . . C 3 -22.007 -49.091 -10.873 1 32.87 ? C4 IXA 1245 A 1 HETATM 27 C C5 IXA . . . C 3 -22.115 -50.614 -10.938 1 32.9 ? C5 IXA 1245 A 1 HETATM 28 N N7 IXA . . . C 3 -19 -46.896 -11.045 1 33.35 ? N7 IXA 1245 A 1 HETATM 29 C C8 IXA . . . C 3 -18.896 -48.239 -11.326 1 34.17 ? C8 IXA 1245 A 1 HETATM 30 N N10 IXA . . . C 3 -17.624 -48.696 -11.084 1 35.86 ? N10 IXA 1245 A 1 HETATM 31 C C12 IXA . . . C 3 -23.054 -51.051 -12.053 1 30.5 ? C12 IXA 1245 A 1 HETATM 32 N N13 IXA . . . C 3 -23.683 -52.339 -11.801 1 29.52 ? N13 IXA 1245 A 1 HETATM 33 C C24 IXA . . . C 3 -25.592 -53.723 -11.274 1 29.78 ? C24 IXA 1245 A 1 HETATM 34 N N25 IXA . . . C 3 -19.812 -49.04 -11.773 1 34.43 ? N25 IXA 1245 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #