data_4D7G # _model_server_result.job_id w3sO9Pqm05pGG5WZBG7Y-A _model_server_result.datetime_utc '2024-10-11 11:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d7g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1250}' # _entry.id 4D7G # _exptl.entry_id 4D7G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.49 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-1-benzyl-2-(3-guanidinopropylamino)-2-oxo-ethyl]-4-hydroxy-2-oxo-1H-quinoline-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D7G _cell.length_a 120.929 _cell.length_b 120.929 _cell.length_c 120.929 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D7G _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C23 H26 N6 O4' _chem_comp.formula_weight 450.49 _chem_comp.id E6U _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-1-benzyl-2-(3-guanidinopropylamino)-2-oxo-ethyl]-4-hydroxy-2-oxo-1H-quinoline-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4D7G _atom_sites.fract_transf_matrix[1][1] 0.008269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1244 1244 GOL GOL . C 2 GOL A 1 1245 1245 GOL GOL . D 2 GOL A 1 1246 1246 GOL GOL . E 2 GOL A 1 1247 1247 GOL GOL . F 2 GOL A 1 1248 1248 GOL GOL . G 2 GOL A 1 1249 1249 GOL GOL . H 3 E6U A 1 1250 1250 E6U E6U . I 4 SO4 A 1 1251 1251 SO4 SO4 . J 4 SO4 A 1 1252 1252 SO4 SO4 . K 4 SO4 A 1 1253 1253 SO4 SO4 . L 4 SO4 A 1 1254 1254 SO4 SO4 . M 4 SO4 A 1 1255 1255 SO4 SO4 . N 5 TRS A 1 1256 1256 TRS TRS . O 6 HOH A 1 2001 2001 HOH HOH . O 6 HOH A 2 2002 2002 HOH HOH . O 6 HOH A 3 2003 2003 HOH HOH . O 6 HOH A 4 2004 2004 HOH HOH . O 6 HOH A 5 2005 2005 HOH HOH . O 6 HOH A 6 2006 2006 HOH HOH . O 6 HOH A 7 2007 2007 HOH HOH . O 6 HOH A 8 2008 2008 HOH HOH . O 6 HOH A 9 2009 2009 HOH HOH . O 6 HOH A 10 2010 2010 HOH HOH . O 6 HOH A 11 2011 2011 HOH HOH . O 6 HOH A 12 2012 2012 HOH HOH . O 6 HOH A 13 2013 2013 HOH HOH . O 6 HOH A 14 2014 2014 HOH HOH . O 6 HOH A 15 2015 2015 HOH HOH . O 6 HOH A 16 2016 2016 HOH HOH . O 6 HOH A 17 2017 2017 HOH HOH . O 6 HOH A 18 2018 2018 HOH HOH . O 6 HOH A 19 2019 2019 HOH HOH . O 6 HOH A 20 2020 2020 HOH HOH . O 6 HOH A 21 2021 2021 HOH HOH . O 6 HOH A 22 2022 2022 HOH HOH . O 6 HOH A 23 2023 2023 HOH HOH . O 6 HOH A 24 2024 2024 HOH HOH . O 6 HOH A 25 2025 2025 HOH HOH . O 6 HOH A 26 2026 2026 HOH HOH . O 6 HOH A 27 2027 2027 HOH HOH . O 6 HOH A 28 2028 2028 HOH HOH . O 6 HOH A 29 2029 2029 HOH HOH . O 6 HOH A 30 2030 2030 HOH HOH . O 6 HOH A 31 2031 2031 HOH HOH . O 6 HOH A 32 2032 2032 HOH HOH . O 6 HOH A 33 2033 2033 HOH HOH . O 6 HOH A 34 2034 2034 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E6U . . . H 3 -55.275 29.63 -12.529 1 75.53 ? C1 E6U 1250 A 1 HETATM 2 C C2 E6U . . . H 3 -54.049 29.759 -11.91 1 72.88 ? C2 E6U 1250 A 1 HETATM 3 C C3 E6U . . . H 3 -55.666 28.411 -13.046 1 75.63 ? C3 E6U 1250 A 1 HETATM 4 C C4 E6U . . . H 3 -54.586 28.524 -8.299 1 52.91 ? C4 E6U 1250 A 1 HETATM 5 C C5 E6U . . . H 3 -53.234 28.652 -11.803 1 70.94 ? C5 E6U 1250 A 1 HETATM 6 C C6 E6U . . . H 3 -54.849 27.303 -12.928 1 73.44 ? C6 E6U 1250 A 1 HETATM 7 C C7 E6U . . . H 3 -54.956 29.468 -7.362 1 50.59 ? C7 E6U 1250 A 1 HETATM 8 C C8 E6U . . . H 3 -56.31 27.061 -7.453 1 57.29 ? C8 E6U 1250 A 1 HETATM 9 C C9 E6U . . . H 3 -56.69 28.02 -6.53 1 56.82 ? C9 E6U 1250 A 1 HETATM 10 C C10 E6U . . . H 3 -55.254 27.31 -8.319 1 55.77 ? C10 E6U 1250 A 1 HETATM 11 C C11 E6U . . . H 3 -53.631 27.42 -12.292 1 69.17 ? C11 E6U 1250 A 1 HETATM 12 C C12 E6U . . . H 3 -55.991 29.212 -6.484 1 55.43 ? C12 E6U 1250 A 1 HETATM 13 C C13 E6U . . . H 3 -58.17 28.751 -4.707 1 59.49 ? C13 E6U 1250 A 1 HETATM 14 C C14 E6U . . . H 3 -57.808 27.834 -5.612 1 59.3 ? C14 E6U 1250 A 1 HETATM 15 C C15 E6U . . . H 3 -57.413 30.018 -4.636 1 58.48 ? C15 E6U 1250 A 1 HETATM 16 C C16 E6U . . . H 3 -54.91 26.278 -9.304 1 57.36 ? C16 E6U 1250 A 1 HETATM 17 C C17 E6U . . . H 3 -51.912 24.739 -10.353 1 59.52 ? C17 E6U 1250 A 1 HETATM 18 C C18 E6U . . . H 3 -48.323 19.253 -10.696 1 57.27 ? C18 E6U 1250 A 1 HETATM 19 C C19 E6U . . . H 3 -52.761 26.22 -12.119 1 64.24 ? C19 E6U 1250 A 1 HETATM 20 C C20 E6U . . . H 3 -49.757 22.335 -11.753 1 50.38 ? C20 E6U 1250 A 1 HETATM 21 C C21 E6U . . . H 3 -48.6 21.464 -11.305 1 51.41 ? C21 E6U 1250 A 1 HETATM 22 C C22 E6U . . . H 3 -50.68 22.602 -10.582 1 52.79 ? C22 E6U 1250 A 1 HETATM 23 C C23 E6U . . . H 3 -53.139 25.425 -10.863 1 59.87 ? C23 E6U 1250 A 1 HETATM 24 N N24 E6U . . . H 3 -49.198 20.17 -10.938 1 55.21 ? N24 E6U 1250 A 1 HETATM 25 N N25 E6U . . . H 3 -56.373 30.186 -5.535 1 56.54 ? N25 E6U 1250 A 1 HETATM 26 N N26 E6U . . . H 3 -46.95 19.407 -10.759 1 59.33 ? N26 E6U 1250 A 1 HETATM 27 N N27 E6U . . . H 3 -48.699 17.976 -10.351 1 54.92 ? N27 E6U 1250 A 1 HETATM 28 N N28 E6U . . . H 3 -53.586 26.22 -9.719 1 59.74 ? N28 E6U 1250 A 1 HETATM 29 N N29 E6U . . . H 3 -51.7 23.533 -10.975 1 57.25 ? N29 E6U 1250 A 1 HETATM 30 O O30 E6U . . . H 3 -57.743 30.835 -3.789 1 61.54 ? O30 E6U 1250 A 1 HETATM 31 O O31 E6U . . . H 3 -55.813 25.549 -9.686 1 59.29 ? O31 E6U 1250 A 1 HETATM 32 O O32 E6U . . . H 3 -51.213 25.213 -9.47 1 65.62 ? O32 E6U 1250 A 1 HETATM 33 O O33 E6U . . . H 3 -58.506 26.666 -5.684 1 63.43 ? O33 E6U 1250 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #