data_4D7S # _model_server_result.job_id vmY89UfrFDOBqHeKz4pyyA _model_server_result.datetime_utc '2024-12-26 13:51:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1423}' # _entry.id 4D7S # _exptl.entry_id 4D7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D7S _cell.length_a 87.202 _cell.length_b 87.202 _cell.length_c 142.337 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3,4 B,D,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -87.202 0 3 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -87.202 -87.202 0 4 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -87.202 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 4D7S _atom_sites.fract_transf_matrix[1][1] 0.011468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PCG A 1 1423 1423 PCG PCG . D 2 PCG B 1 1423 1423 PCG PCG . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . C 2 -16.835 -39.331 -12.006 1 55.28 ? PA PCG 1423 A 1 HETATM 2 O O1A PCG . . . C 2 -16.774 -39.852 -13.366 1 75.45 ? O1A PCG 1423 A 1 HETATM 3 O O2A PCG . . . C 2 -17.768 -39.39 -10.696 1 87.13 ? O2A PCG 1423 A 1 HETATM 4 O O5' PCG . . . C 2 -15.766 -40.206 -11.124 1 83.94 ? O5' PCG 1423 A 1 HETATM 5 C C5' PCG . . . C 2 -15.083 -39.599 -10.059 1 59.31 ? C5' PCG 1423 A 1 HETATM 6 C C4' PCG . . . C 2 -14.383 -38.509 -10.801 1 55.64 ? C4' PCG 1423 A 1 HETATM 7 O O4' PCG . . . C 2 -13.433 -37.954 -9.94 1 54.55 ? O4' PCG 1423 A 1 HETATM 8 C C3' PCG . . . C 2 -15.482 -37.461 -10.983 1 59.17 ? C3' PCG 1423 A 1 HETATM 9 O O3' PCG . . . C 2 -16.306 -37.78 -12.046 1 65.34 ? O3' PCG 1423 A 1 HETATM 10 C C2' PCG . . . C 2 -14.555 -36.31 -11.286 1 58.17 ? C2' PCG 1423 A 1 HETATM 11 O O2' PCG . . . C 2 -15.185 -35.252 -10.561 1 59.8 ? O2' PCG 1423 A 1 HETATM 12 C C1' PCG . . . C 2 -13.255 -36.673 -10.486 1 53.5 ? C1' PCG 1423 A 1 HETATM 13 N N9 PCG . . . C 2 -12.223 -36.868 -11.488 1 57.79 ? N9 PCG 1423 A 1 HETATM 14 C C8 PCG . . . C 2 -11.991 -37.711 -12.64 1 56.32 ? C8 PCG 1423 A 1 HETATM 15 N N7 PCG . . . C 2 -10.842 -37.471 -13.256 1 40.11 ? N7 PCG 1423 A 1 HETATM 16 C C5 PCG . . . C 2 -10.25 -36.458 -12.537 1 49.4 ? C5 PCG 1423 A 1 HETATM 17 C C6 PCG . . . C 2 -9 -35.699 -12.618 1 53.96 ? C6 PCG 1423 A 1 HETATM 18 O O6 PCG . . . C 2 -8.14 -35.867 -13.472 1 66.72 ? O6 PCG 1423 A 1 HETATM 19 N N1 PCG . . . C 2 -8.752 -34.68 -11.627 1 49.65 ? N1 PCG 1423 A 1 HETATM 20 C C2 PCG . . . C 2 -9.622 -34.443 -10.682 1 59.41 ? C2 PCG 1423 A 1 HETATM 21 N N2 PCG . . . C 2 -9.514 -33.482 -9.653 1 78.69 ? N2 PCG 1423 A 1 HETATM 22 N N3 PCG . . . C 2 -10.877 -35.116 -10.493 1 60.71 ? N3 PCG 1423 A 1 HETATM 23 C C4 PCG . . . C 2 -11.055 -36.082 -11.477 1 55.25 ? C4 PCG 1423 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #