data_4D7S # _model_server_result.job_id 0ApUMvwjFl3C4COWdLYkdw _model_server_result.datetime_utc '2024-12-26 14:04:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1423}' # _entry.id 4D7S # _exptl.entry_id 4D7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D7S _cell.length_a 87.202 _cell.length_b 87.202 _cell.length_c 142.337 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3,4 B,D,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -87.202 0 3 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -87.202 -87.202 0 4 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -87.202 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 4D7S _atom_sites.fract_transf_matrix[1][1] 0.011468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PCG A 1 1423 1423 PCG PCG . D 2 PCG B 1 1423 1423 PCG PCG . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . D 2 -33.871 -18.007 -30.529 1 46.9 ? PA PCG 1423 B 1 HETATM 2 O O1A PCG . . . D 2 -34.339 -18.083 -29.15 1 89.35 ? O1A PCG 1423 B 1 HETATM 3 O O2A PCG . . . D 2 -34.149 -18.664 -31.976 1 96.72 ? O2A PCG 1423 B 1 HETATM 4 O O5' PCG . . . D 2 -34.517 -16.648 -31.158 1 76.73 ? O5' PCG 1423 B 1 HETATM 5 C C5' PCG . . . D 2 -33.853 -16.004 -32.21 1 62.93 ? C5' PCG 1423 B 1 HETATM 6 C C4' PCG . . . D 2 -32.571 -15.653 -31.529 1 64.5 ? C4' PCG 1423 B 1 HETATM 7 O O4' PCG . . . D 2 -31.867 -14.802 -32.386 1 63.5 ? O4' PCG 1423 B 1 HETATM 8 C C3' PCG . . . D 2 -31.808 -16.978 -31.515 1 71.35 ? C3' PCG 1423 B 1 HETATM 9 O O3' PCG . . . D 2 -32.25 -17.792 -30.492 1 66.51 ? O3' PCG 1423 B 1 HETATM 10 C C2' PCG . . . D 2 -30.456 -16.371 -31.241 1 70.16 ? C2' PCG 1423 B 1 HETATM 11 O O2' PCG . . . D 2 -29.608 -17.182 -32.055 1 70.68 ? O2' PCG 1423 B 1 HETATM 12 C C1' PCG . . . D 2 -30.544 -14.98 -31.956 1 69.39 ? C1' PCG 1423 B 1 HETATM 13 N N9 PCG . . . D 2 -30.396 -13.994 -30.906 1 76.92 ? N9 PCG 1423 B 1 HETATM 14 C C8 PCG . . . D 2 -31.026 -13.668 -29.648 1 76.78 ? C8 PCG 1423 B 1 HETATM 15 N N7 PCG . . . D 2 -30.484 -12.631 -29.03 1 67.17 ? N7 PCG 1423 B 1 HETATM 16 C C5 PCG . . . D 2 -29.468 -12.204 -29.863 1 78.74 ? C5 PCG 1423 B 1 HETATM 17 C C6 PCG . . . D 2 -28.469 -11.134 -29.846 1 85.54 ? C6 PCG 1423 B 1 HETATM 18 O O6 PCG . . . D 2 -28.35 -10.31 -28.95 1 101.69 ? O6 PCG 1423 B 1 HETATM 19 N N1 PCG . . . D 2 -27.551 -11.031 -30.957 1 82.86 ? N1 PCG 1423 B 1 HETATM 20 C C2 PCG . . . D 2 -27.619 -11.876 -31.95 1 88.66 ? C2 PCG 1423 B 1 HETATM 21 N N2 PCG . . . D 2 -26.796 -11.9 -33.095 1 103.23 ? N2 PCG 1423 B 1 HETATM 22 N N3 PCG . . . D 2 -28.548 -12.965 -32.085 1 85.15 ? N3 PCG 1423 B 1 HETATM 23 C C4 PCG . . . D 2 -29.398 -13.005 -30.987 1 78.06 ? C4 PCG 1423 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #