data_4D85
#
_model_server_result.job_id            u-_Gwc0fGrLbEnsXPHWv5g 
_model_server_result.datetime_utc      '2024-12-22 02:47:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d85 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4D85 
#
_exptl.entry_id    4D85 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              564.702 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(3R,4S,5S)-3-[(3-tert-butylbenzyl)amino]-5-[(4,4,7'-trifluoro-1',2'-dihydrospiro[cyclohexane-1,3'-indol]-5'-yl)methyl]tetrahydro-2H-thiopyran-4-ol 1,1-dioxide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4D85 
_cell.length_a            102.656 
_cell.length_b            102.656 
_cell.length_c            170.902 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D85 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 171 A CYS 157 1_555 A SG CYS 375 A CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 233 A CYS 209 1_555 A SG CYS 398 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 285 A CYS 261 1_555 A SG CYS 335 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C30 H39 F3 N2 O3 S' 
_chem_comp.formula_weight    564.702 
_chem_comp.id                0GU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(3R,4S,5S)-3-[(3-tert-butylbenzyl)amino]-5-[(4,4,7'-trifluoro-1',2'-dihydrospiro[cyclohexane-1,3'-indol]-5'-yl)methyl]tetrahydro-2H-thiopyran-4-ol 1,1-dioxide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 C2 0GU sing 1 n n 
F78 C2 0GU sing 2 n n 
C2 C3 0GU sing 3 n n 
C2 C75 0GU sing 4 n n 
C3 C6 0GU sing 5 n n 
C6 C9 0GU sing 6 n n 
C75 C72 0GU sing 7 n n 
C72 C9 0GU sing 8 n n 
C9 C16 0GU sing 9 n n 
C9 C10 0GU sing 10 n n 
C17 C16 0GU doub 11 n y 
C17 C19 0GU sing 12 n y 
C16 C15 0GU sing 13 n y 
C24 C19 0GU sing 14 n n 
C24 C27 0GU sing 15 n n 
C37 C27 0GU sing 16 n n 
C37 S36 0GU sing 17 n n 
C29 O70 0GU sing 18 n n 
C29 C27 0GU sing 19 n n 
C29 C31 0GU sing 20 n n 
C10 N13 0GU sing 21 n n 
C19 C20 0GU doub 22 n y 
C33 C31 0GU sing 23 n n 
C33 S36 0GU sing 24 n n 
N42 C31 0GU sing 25 n n 
N42 C44 0GU sing 26 n n 
O41 S36 0GU doub 27 n n 
S36 O40 0GU doub 28 n n 
C15 N13 0GU sing 29 n n 
C15 C22 0GU doub 30 n y 
C44 C47 0GU sing 31 n n 
C20 C22 0GU sing 32 n y 
C22 F23 0GU sing 33 n n 
C47 C48 0GU doub 34 n y 
C47 C55 0GU sing 35 n y 
C48 C50 0GU sing 36 n y 
C55 C53 0GU doub 37 n y 
C66 C57 0GU sing 38 n n 
C50 C57 0GU sing 39 n n 
C50 C51 0GU doub 40 n y 
C58 C57 0GU sing 41 n n 
C57 C62 0GU sing 42 n n 
C53 C51 0GU sing 43 n y 
C3 H1 0GU sing 44 n n 
C3 H2 0GU sing 45 n n 
C6 H3 0GU sing 46 n n 
C6 H4 0GU sing 47 n n 
C10 H5 0GU sing 48 n n 
C10 H6 0GU sing 49 n n 
N13 H7 0GU sing 50 n n 
C17 H8 0GU sing 51 n n 
C20 H9 0GU sing 52 n n 
C24 H10 0GU sing 53 n n 
C24 H11 0GU sing 54 n n 
C27 H12 0GU sing 55 n n 
C29 H13 0GU sing 56 n n 
C31 H14 0GU sing 57 n n 
C33 H15 0GU sing 58 n n 
C33 H16 0GU sing 59 n n 
C37 H17 0GU sing 60 n n 
C37 H18 0GU sing 61 n n 
N42 H19 0GU sing 62 n n 
C44 H21 0GU sing 63 n n 
C44 H22 0GU sing 64 n n 
C48 H23 0GU sing 65 n n 
C51 H24 0GU sing 66 n n 
C53 H25 0GU sing 67 n n 
C55 H26 0GU sing 68 n n 
C58 H27 0GU sing 69 n n 
C58 H28 0GU sing 70 n n 
C58 H29 0GU sing 71 n n 
C62 H30 0GU sing 72 n n 
C62 H31 0GU sing 73 n n 
C62 H32 0GU sing 74 n n 
C66 H33 0GU sing 75 n n 
C66 H34 0GU sing 76 n n 
C66 H35 0GU sing 77 n n 
O70 H36 0GU sing 78 n n 
C72 H37 0GU sing 79 n n 
C72 H38 0GU sing 80 n n 
C75 H39 0GU sing 81 n n 
C75 H40 0GU sing 82 n n 
#
_atom_sites.entry_id                     4D85 
_atom_sites.fract_transf_matrix[1][1]    0.009741 
_atom_sites.fract_transf_matrix[1][2]    0.005624 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011248 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0GU A 1 401 1 0GU BVI . 
C 3 IOD A 1 402 1 IOD I1 . 
D 4 HOH A 1 501 1 HOH HOH . 
D 4 HOH A 2 502 2 HOH HOH . 
D 4 HOH A 3 503 3 HOH HOH . 
D 4 HOH A 4 504 4 HOH HOH . 
D 4 HOH A 5 505 5 HOH HOH . 
D 4 HOH A 6 506 6 HOH HOH . 
D 4 HOH A 7 507 7 HOH HOH . 
D 4 HOH A 8 508 8 HOH HOH . 
D 4 HOH A 9 509 9 HOH HOH . 
D 4 HOH A 10 510 10 HOH HOH . 
D 4 HOH A 11 511 11 HOH HOH . 
D 4 HOH A 12 512 12 HOH HOH . 
D 4 HOH A 13 513 13 HOH HOH . 
D 4 HOH A 14 514 14 HOH HOH . 
D 4 HOH A 15 515 15 HOH HOH . 
D 4 HOH A 16 516 16 HOH HOH . 
D 4 HOH A 17 517 17 HOH HOH . 
D 4 HOH A 18 518 18 HOH HOH . 
D 4 HOH A 19 519 19 HOH HOH . 
D 4 HOH A 20 520 20 HOH HOH . 
D 4 HOH A 21 521 21 HOH HOH . 
D 4 HOH A 22 522 22 HOH HOH . 
D 4 HOH A 23 523 23 HOH HOH . 
D 4 HOH A 24 524 24 HOH HOH . 
D 4 HOH A 25 525 25 HOH HOH . 
D 4 HOH A 26 526 26 HOH HOH . 
D 4 HOH A 27 527 27 HOH HOH . 
D 4 HOH A 28 528 28 HOH HOH . 
D 4 HOH A 29 529 29 HOH HOH . 
D 4 HOH A 30 530 30 HOH HOH . 
D 4 HOH A 31 531 31 HOH HOH . 
D 4 HOH A 32 532 32 HOH HOH . 
D 4 HOH A 33 533 33 HOH HOH . 
D 4 HOH A 34 534 34 HOH HOH . 
D 4 HOH A 35 535 35 HOH HOH . 
D 4 HOH A 36 536 36 HOH HOH . 
D 4 HOH A 37 537 37 HOH HOH . 
D 4 HOH A 38 538 38 HOH HOH . 
D 4 HOH A 39 539 39 HOH HOH . 
D 4 HOH A 40 540 40 HOH HOH . 
D 4 HOH A 41 541 41 HOH HOH . 
D 4 HOH A 42 542 42 HOH HOH . 
D 4 HOH A 43 543 43 HOH HOH . 
D 4 HOH A 44 544 44 HOH HOH . 
D 4 HOH A 45 545 45 HOH HOH . 
D 4 HOH A 46 546 46 HOH HOH . 
D 4 HOH A 47 547 47 HOH HOH . 
D 4 HOH A 48 548 48 HOH HOH . 
D 4 HOH A 49 549 49 HOH HOH . 
D 4 HOH A 50 550 50 HOH HOH . 
D 4 HOH A 51 551 51 HOH HOH . 
D 4 HOH A 52 552 52 HOH HOH . 
D 4 HOH A 53 553 53 HOH HOH . 
D 4 HOH A 54 554 54 HOH HOH . 
D 4 HOH A 55 555 55 HOH HOH . 
D 4 HOH A 56 556 56 HOH HOH . 
D 4 HOH A 57 557 57 HOH HOH . 
D 4 HOH A 58 558 58 HOH HOH . 
D 4 HOH A 59 559 59 HOH HOH . 
D 4 HOH A 60 560 60 HOH HOH . 
D 4 HOH A 61 561 61 HOH HOH . 
D 4 HOH A 62 562 62 HOH HOH . 
D 4 HOH A 63 563 63 HOH HOH . 
D 4 HOH A 64 564 64 HOH HOH . 
D 4 HOH A 65 565 65 HOH HOH . 
D 4 HOH A 66 566 66 HOH HOH . 
D 4 HOH A 67 567 67 HOH HOH . 
D 4 HOH A 68 568 68 HOH HOH . 
D 4 HOH A 69 569 69 HOH HOH . 
D 4 HOH A 70 570 70 HOH HOH . 
D 4 HOH A 71 571 71 HOH HOH . 
D 4 HOH A 72 572 72 HOH HOH . 
D 4 HOH A 73 573 73 HOH HOH . 
D 4 HOH A 74 574 74 HOH HOH . 
D 4 HOH A 75 575 75 HOH HOH . 
D 4 HOH A 76 576 76 HOH HOH . 
D 4 HOH A 77 577 77 HOH HOH . 
D 4 HOH A 78 578 78 HOH HOH . 
D 4 HOH A 79 579 79 HOH HOH . 
D 4 HOH A 80 580 80 HOH HOH . 
D 4 HOH A 81 581 81 HOH HOH . 
D 4 HOH A 82 582 82 HOH HOH . 
D 4 HOH A 83 583 83 HOH HOH . 
D 4 HOH A 84 584 84 HOH HOH . 
D 4 HOH A 85 585 85 HOH HOH . 
D 4 HOH A 86 586 86 HOH HOH . 
D 4 HOH A 87 587 87 HOH HOH . 
D 4 HOH A 88 588 88 HOH HOH . 
D 4 HOH A 89 589 89 HOH HOH . 
D 4 HOH A 90 590 90 HOH HOH . 
D 4 HOH A 91 591 91 HOH HOH . 
D 4 HOH A 92 592 92 HOH HOH . 
D 4 HOH A 93 593 93 HOH HOH . 
D 4 HOH A 94 594 94 HOH HOH . 
D 4 HOH A 95 595 95 HOH HOH . 
D 4 HOH A 96 596 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F1 0GU . . . B 2 27.337 39.59 60.099 1 31.61 ? F1 0GU 401 A 1 
HETATM 2 C C2 0GU . . . B 2 26.661 40.46 60.895 1 31.12 ? C2 0GU 401 A 1 
HETATM 3 C C3 0GU . . . B 2 25.165 39.984 60.932 1 29.05 ? C3 0GU 401 A 1 
HETATM 4 C C6 0GU . . . B 2 24.328 40.485 62.153 1 28.26 ? C6 0GU 401 A 1 
HETATM 5 C C9 0GU . . . B 2 25.084 40.554 63.529 1 30.46 ? C9 0GU 401 A 1 
HETATM 6 C C10 0GU . . . B 2 24.273 41.439 64.561 1 31 ? C10 0GU 401 A 1 
HETATM 7 N N13 0GU . . . B 2 24.393 40.719 65.818 1 30.71 ? N13 0GU 401 A 1 
HETATM 8 C C15 0GU . . . B 2 24.748 39.44 65.625 1 31.59 ? C15 0GU 401 A 1 
HETATM 9 C C16 0GU . . . B 2 25.159 39.21 64.304 1 30.01 ? C16 0GU 401 A 1 
HETATM 10 C C17 0GU . . . B 2 25.55 37.9 63.935 1 30.95 ? C17 0GU 401 A 1 
HETATM 11 C C19 0GU . . . B 2 25.539 36.846 64.89 1 32.63 ? C19 0GU 401 A 1 
HETATM 12 C C20 0GU . . . B 2 25.126 37.112 66.228 1 33.25 ? C20 0GU 401 A 1 
HETATM 13 C C22 0GU . . . B 2 24.726 38.421 66.605 1 34.06 ? C22 0GU 401 A 1 
HETATM 14 F F23 0GU . . . B 2 24.339 38.695 67.853 1 36.85 ? F23 0GU 401 A 1 
HETATM 15 C C24 0GU . . . B 2 25.986 35.428 64.473 1 30.11 ? C24 0GU 401 A 1 
HETATM 16 C C27 0GU . . . B 2 27.426 35.054 64.96 1 29.48 ? C27 0GU 401 A 1 
HETATM 17 C C29 0GU . . . B 2 27.991 33.66 64.537 1 30.55 ? C29 0GU 401 A 1 
HETATM 18 C C31 0GU . . . B 2 29.366 33.362 65.208 1 29.12 ? C31 0GU 401 A 1 
HETATM 19 C C33 0GU . . . B 2 30.483 34.383 64.891 1 29.11 ? C33 0GU 401 A 1 
HETATM 20 S S36 0GU . . . B 2 29.928 35.979 65.492 1 28.11 ? S36 0GU 401 A 1 
HETATM 21 C C37 0GU . . . B 2 28.446 36.138 64.497 1 29.16 ? C37 0GU 401 A 1 
HETATM 22 O O40 0GU . . . B 2 29.553 35.929 66.887 1 26.31 ? O40 0GU 401 A 1 
HETATM 23 O O41 0GU . . . B 2 30.895 36.956 65.079 1 32.83 ? O41 0GU 401 A 1 
HETATM 24 N N42 0GU . . . B 2 29.836 31.977 64.973 1 31.57 ? N42 0GU 401 A 1 
HETATM 25 C C44 0GU . . . B 2 30.933 31.363 65.772 1 33.71 ? C44 0GU 401 A 1 
HETATM 26 C C47 0GU . . . B 2 30.469 31.316 67.245 1 34.41 ? C47 0GU 401 A 1 
HETATM 27 C C48 0GU . . . B 2 29.387 30.494 67.639 1 33.71 ? C48 0GU 401 A 1 
HETATM 28 C C50 0GU . . . B 2 28.933 30.426 68.986 1 33.04 ? C50 0GU 401 A 1 
HETATM 29 C C51 0GU . . . B 2 29.626 31.243 69.926 1 34.35 ? C51 0GU 401 A 1 
HETATM 30 C C53 0GU . . . B 2 30.71 32.072 69.556 1 33.26 ? C53 0GU 401 A 1 
HETATM 31 C C55 0GU . . . B 2 31.13 32.107 68.212 1 33 ? C55 0GU 401 A 1 
HETATM 32 C C57 0GU . . . B 2 27.738 29.503 69.41 1 33.99 ? C57 0GU 401 A 1 
HETATM 33 C C58 0GU . . . B 2 28.096 28.042 68.996 1 32.24 ? C58 0GU 401 A 1 
HETATM 34 C C62 0GU . . . B 2 27.44 29.51 70.945 1 33.23 ? C62 0GU 401 A 1 
HETATM 35 C C66 0GU . . . B 2 26.39 29.926 68.741 1 33.84 ? C66 0GU 401 A 1 
HETATM 36 O O70 0GU . . . B 2 27.191 32.545 64.96 1 32.16 ? O70 0GU 401 A 1 
HETATM 37 C C72 0GU . . . B 2 26.512 41.179 63.359 1 29.06 ? C72 0GU 401 A 1 
HETATM 38 C C75 0GU . . . B 2 27.386 40.494 62.275 1 29.18 ? C75 0GU 401 A 1 
HETATM 39 F F78 0GU . . . B 2 26.764 41.704 60.333 1 29.88 ? F78 0GU 401 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#