data_4D86
#
_model_server_result.job_id            GBpB42fZvlmEtIap-K2u9Q 
_model_server_result.datetime_utc      '2024-10-28 02:26:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d86 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1202}' 
#
_entry.id    4D86 
#
_exptl.entry_id    4D86 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4D86 
_cell.length_a            46.6 
_cell.length_b            60.027 
_cell.length_c            145.072 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D86 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4D86 
_atom_sites.fract_transf_matrix[1][1]    0.021459 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016659 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006893 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 1201 300 ADP ADP . 
C 2 ADP A 1 1202 301 ADP ADP . 
D 3 HOH A 1 1301 1 HOH HOH . 
D 3 HOH A 2 1302 2 HOH HOH . 
D 3 HOH A 3 1303 3 HOH HOH . 
D 3 HOH A 4 1304 4 HOH HOH . 
D 3 HOH A 5 1305 5 HOH HOH . 
D 3 HOH A 6 1306 6 HOH HOH . 
D 3 HOH A 7 1307 7 HOH HOH . 
D 3 HOH A 8 1308 8 HOH HOH . 
D 3 HOH A 9 1309 9 HOH HOH . 
D 3 HOH A 10 1310 10 HOH HOH . 
D 3 HOH A 11 1311 11 HOH HOH . 
D 3 HOH A 12 1312 12 HOH HOH . 
D 3 HOH A 13 1313 13 HOH HOH . 
D 3 HOH A 14 1314 14 HOH HOH . 
D 3 HOH A 15 1315 15 HOH HOH . 
D 3 HOH A 16 1316 16 HOH HOH . 
D 3 HOH A 17 1317 17 HOH HOH . 
D 3 HOH A 18 1318 18 HOH HOH . 
D 3 HOH A 19 1319 19 HOH HOH . 
D 3 HOH A 20 1320 20 HOH HOH . 
D 3 HOH A 21 1321 21 HOH HOH . 
D 3 HOH A 22 1322 22 HOH HOH . 
D 3 HOH A 23 1323 23 HOH HOH . 
D 3 HOH A 24 1324 24 HOH HOH . 
D 3 HOH A 25 1325 25 HOH HOH . 
D 3 HOH A 26 1326 26 HOH HOH . 
D 3 HOH A 27 1327 27 HOH HOH . 
D 3 HOH A 28 1328 28 HOH HOH . 
D 3 HOH A 29 1329 29 HOH HOH . 
D 3 HOH A 30 1330 30 HOH HOH . 
D 3 HOH A 31 1331 31 HOH HOH . 
D 3 HOH A 32 1332 32 HOH HOH . 
D 3 HOH A 33 1333 33 HOH HOH . 
D 3 HOH A 34 1334 34 HOH HOH . 
D 3 HOH A 35 1335 35 HOH HOH . 
D 3 HOH A 36 1336 36 HOH HOH . 
D 3 HOH A 37 1337 37 HOH HOH . 
D 3 HOH A 38 1338 38 HOH HOH . 
D 3 HOH A 39 1339 39 HOH HOH . 
D 3 HOH A 40 1340 40 HOH HOH . 
D 3 HOH A 41 1341 41 HOH HOH . 
D 3 HOH A 42 1342 42 HOH HOH . 
D 3 HOH A 43 1343 43 HOH HOH . 
D 3 HOH A 44 1344 44 HOH HOH . 
D 3 HOH A 45 1345 45 HOH HOH . 
D 3 HOH A 46 1346 46 HOH HOH . 
D 3 HOH A 47 1347 47 HOH HOH . 
D 3 HOH A 48 1348 48 HOH HOH . 
D 3 HOH A 49 1349 49 HOH HOH . 
D 3 HOH A 50 1350 50 HOH HOH . 
D 3 HOH A 51 1351 51 HOH HOH . 
D 3 HOH A 52 1352 52 HOH HOH . 
D 3 HOH A 53 1353 53 HOH HOH . 
D 3 HOH A 54 1354 54 HOH HOH . 
D 3 HOH A 55 1355 55 HOH HOH . 
D 3 HOH A 56 1356 56 HOH HOH . 
D 3 HOH A 57 1357 57 HOH HOH . 
D 3 HOH A 58 1358 58 HOH HOH . 
D 3 HOH A 59 1359 59 HOH HOH . 
D 3 HOH A 60 1360 60 HOH HOH . 
D 3 HOH A 61 1361 61 HOH HOH . 
D 3 HOH A 62 1362 62 HOH HOH . 
D 3 HOH A 63 1363 63 HOH HOH . 
D 3 HOH A 64 1364 64 HOH HOH . 
D 3 HOH A 65 1365 65 HOH HOH . 
D 3 HOH A 66 1366 66 HOH HOH . 
D 3 HOH A 67 1367 67 HOH HOH . 
D 3 HOH A 68 1368 68 HOH HOH . 
D 3 HOH A 69 1369 69 HOH HOH . 
D 3 HOH A 70 1370 70 HOH HOH . 
D 3 HOH A 71 1371 71 HOH HOH . 
D 3 HOH A 72 1372 72 HOH HOH . 
D 3 HOH A 73 1373 73 HOH HOH . 
D 3 HOH A 74 1374 74 HOH HOH . 
D 3 HOH A 75 1375 75 HOH HOH . 
D 3 HOH A 76 1376 76 HOH HOH . 
D 3 HOH A 77 1377 77 HOH HOH . 
D 3 HOH A 78 1378 78 HOH HOH . 
D 3 HOH A 79 1379 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 2 7.079 30.423 10.165 1 27.81 ? PB ADP 1202 A 1 
HETATM 2 O O1B ADP . . . C 2 7.165 28.937 10.005 1 24.75 ? O1B ADP 1202 A 1 
HETATM 3 O O2B ADP . . . C 2 7.647 31.106 8.815 1 27.07 ? O2B ADP 1202 A 1 
HETATM 4 O O3B ADP . . . C 2 8.034 30.992 11.335 1 27.31 ? O3B ADP 1202 A 1 
HETATM 5 P PA ADP . . . C 2 4.237 30.519 9.958 1 32.38 ? PA ADP 1202 A 1 
HETATM 6 O O1A ADP . . . C 2 3.313 31.666 10.033 1 31.92 ? O1A ADP 1202 A 1 
HETATM 7 O O2A ADP . . . C 2 4.415 29.819 8.654 1 28.92 ? O2A ADP 1202 A 1 
HETATM 8 O O3A ADP . . . C 2 5.658 31.025 10.538 1 30.06 ? O3A ADP 1202 A 1 
HETATM 9 O O5' ADP . . . C 2 3.682 29.458 11.039 1 34.5 ? O5' ADP 1202 A 1 
HETATM 10 C C5' ADP . . . C 2 4.353 29.236 12.286 1 33.62 ? C5' ADP 1202 A 1 
HETATM 11 C C4' ADP . . . C 2 3.508 28.417 13.248 1 32.06 ? C4' ADP 1202 A 1 
HETATM 12 O O4' ADP . . . C 2 2.438 29.244 13.831 1 32.32 ? O4' ADP 1202 A 1 
HETATM 13 C C3' ADP . . . C 2 2.808 27.249 12.54 1 33.22 ? C3' ADP 1202 A 1 
HETATM 14 O O3' ADP . . . C 2 3.052 26.046 13.289 1 32.21 ? O3' ADP 1202 A 1 
HETATM 15 C C2' ADP . . . C 2 1.326 27.615 12.612 1 31.46 ? C2' ADP 1202 A 1 
HETATM 16 O O2' ADP . . . C 2 0.58 26.424 12.757 1 33.82 ? O2' ADP 1202 A 1 
HETATM 17 C C1' ADP . . . C 2 1.27 28.374 13.926 1 31.22 ? C1' ADP 1202 A 1 
HETATM 18 N N9 ADP . . . C 2 0.188 29.354 13.959 1 29.68 ? N9 ADP 1202 A 1 
HETATM 19 C C8 ADP . . . C 2 -0.487 29.823 12.901 1 27.65 ? C8 ADP 1202 A 1 
HETATM 20 N N7 ADP . . . C 2 -1.339 30.759 13.315 1 26.12 ? N7 ADP 1202 A 1 
HETATM 21 C C5 ADP . . . C 2 -1.21 30.88 14.641 1 28.35 ? C5 ADP 1202 A 1 
HETATM 22 C C6 ADP . . . C 2 -1.826 31.675 15.599 1 28.43 ? C6 ADP 1202 A 1 
HETATM 23 N N6 ADP . . . C 2 -2.799 32.528 15.268 1 28.84 ? N6 ADP 1202 A 1 
HETATM 24 N N1 ADP . . . C 2 -1.439 31.553 16.873 1 29.91 ? N1 ADP 1202 A 1 
HETATM 25 C C2 ADP . . . C 2 -0.478 30.706 17.236 1 30.36 ? C2 ADP 1202 A 1 
HETATM 26 N N3 ADP . . . C 2 0.131 29.928 16.343 1 30.25 ? N3 ADP 1202 A 1 
HETATM 27 C C4 ADP . . . C 2 -0.228 29.99 15.049 1 28.42 ? C4 ADP 1202 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#