data_4D87 # _model_server_result.job_id SjaEo9edYBa3O-u2x7_dVg _model_server_result.datetime_utc '2024-11-12 21:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4D87 # _exptl.entry_id 4D87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECYL SULFATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.56 _cell.angle_gamma 90 _cell.entry_id 4D87 _cell.length_a 47.84 _cell.length_b 79.14 _cell.length_c 85.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D 2 1 B,E 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 69 A HIS 69 1_555 C CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? metalc ? metalc2 B NE2 HIS 42 B HIS 42 1_555 E CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc3 B NE2 HIS 60 B HIS 60 1_555 E CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? # _chem_comp.formula 'C12 H26 O4 S' _chem_comp.formula_weight 266.397 _chem_comp.id SDS _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECYL SULFATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1S SDS doub 262 n n S O2S SDS sing 263 n n S O3S SDS sing 264 n n S O4 SDS doub 265 n n O2S C1 SDS sing 266 n n O3S H3S SDS sing 267 n n C1 C12 SDS sing 268 n n C1 H1C1 SDS sing 269 n n C1 H1C2 SDS sing 270 n n C2 C3 SDS sing 271 n n C2 H2C1 SDS sing 272 n n C2 H2C2 SDS sing 273 n n C2 H2C3 SDS sing 274 n n C3 C4 SDS sing 275 n n C3 H3C1 SDS sing 276 n n C3 H3C2 SDS sing 277 n n C4 C5 SDS sing 278 n n C4 H4C1 SDS sing 279 n n C4 H4C2 SDS sing 280 n n C5 C6 SDS sing 281 n n C5 H5C1 SDS sing 282 n n C5 H5C2 SDS sing 283 n n C6 C7 SDS sing 284 n n C6 H6C1 SDS sing 285 n n C6 H6C2 SDS sing 286 n n C7 C8 SDS sing 287 n n C7 H7C1 SDS sing 288 n n C7 H7C2 SDS sing 289 n n C8 C9 SDS sing 290 n n C8 H8C1 SDS sing 291 n n C8 H8C2 SDS sing 292 n n C9 C10 SDS sing 293 n n C9 H9C1 SDS sing 294 n n C9 H9C2 SDS sing 295 n n C10 C11 SDS sing 296 n n C10 H101 SDS sing 297 n n C10 H102 SDS sing 298 n n C11 C12 SDS sing 299 n n C11 H111 SDS sing 300 n n C11 H112 SDS sing 301 n n C12 H121 SDS sing 302 n n C12 H122 SDS sing 303 n n # _atom_sites.entry_id 4D87 _atom_sites.fract_transf_matrix[1][1] 0.020903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005042 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 401 2 CU CU . D 3 SDS A 1 402 6806 SDS SDS . E 2 CU B 1 401 1 CU CU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SDS . . . D 3 34.515 22.152 18.047 1 179.95 ? S SDS 402 A 1 HETATM 2 O O1S SDS . . . D 3 35.718 21.822 18.754 1 109.5 ? O1S SDS 402 A 1 HETATM 3 O O2S SDS . . . D 3 34.858 22.55 16.609 1 107.42 ? O2S SDS 402 A 1 HETATM 4 O O3S SDS . . . D 3 33.506 20.883 18.005 1 144.79 ? O3S SDS 402 A 1 HETATM 5 O O4 SDS . . . D 3 33.854 23.227 18.724 1 121.23 ? O4 SDS 402 A 1 HETATM 6 C C1 SDS . . . D 3 34.203 23.643 15.978 1 64.18 ? C1 SDS 402 A 1 HETATM 7 C C2 SDS . . . D 3 44.278 24.198 19.976 1 51.74 ? C2 SDS 402 A 1 HETATM 8 C C3 SDS . . . D 3 43.379 24.627 18.844 1 68.68 ? C3 SDS 402 A 1 HETATM 9 C C4 SDS . . . D 3 41.92 24.34 19.151 1 68.23 ? C4 SDS 402 A 1 HETATM 10 C C5 SDS . . . D 3 41.251 23.673 17.967 1 72.94 ? C5 SDS 402 A 1 HETATM 11 C C6 SDS . . . D 3 39.854 24.217 17.711 1 34.45 ? C6 SDS 402 A 1 HETATM 12 C C7 SDS . . . D 3 39.236 24.926 18.9 1 34.75 ? C7 SDS 402 A 1 HETATM 13 C C8 SDS . . . D 3 37.881 25.403 18.436 1 28.86 ? C8 SDS 402 A 1 HETATM 14 C C9 SDS . . . D 3 37.906 25.366 16.927 1 29.32 ? C9 SDS 402 A 1 HETATM 15 C C10 SDS . . . D 3 36.916 24.366 16.376 1 27.43 ? C10 SDS 402 A 1 HETATM 16 C C11 SDS . . . D 3 36.115 25.047 15.291 1 40.43 ? C11 SDS 402 A 1 HETATM 17 C C12 SDS . . . D 3 35.029 24.117 14.797 1 38.4 ? C12 SDS 402 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #