data_4D8D # _model_server_result.job_id vM9FY-NxZhYIphfmhibx0Q _model_server_result.datetime_utc '2025-02-18 02:24:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4D8D # _exptl.entry_id 4D8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D8D _cell.length_a 108.01 _cell.length_b 108.01 _cell.length_c 224.961 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G 1 1 C,D,E,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4D8D _atom_sites.fract_transf_matrix[1][1] 0.009258 _atom_sites.fract_transf_matrix[1][2] 0.005345 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL C 1 201 3 GOL GOL . F 4 HOH A 1 201 43 HOH HOH . G 4 HOH B 1 301 4 HOH HOH . G 4 HOH B 2 302 5 HOH HOH . G 4 HOH B 3 303 7 HOH HOH . G 4 HOH B 4 304 11 HOH HOH . G 4 HOH B 5 305 14 HOH HOH . G 4 HOH B 6 306 15 HOH HOH . G 4 HOH B 7 307 16 HOH HOH . G 4 HOH B 8 308 17 HOH HOH . G 4 HOH B 9 309 18 HOH HOH . G 4 HOH B 10 310 19 HOH HOH . G 4 HOH B 11 311 21 HOH HOH . G 4 HOH B 12 312 22 HOH HOH . G 4 HOH B 13 313 27 HOH HOH . G 4 HOH B 14 314 32 HOH HOH . G 4 HOH B 15 315 34 HOH HOH . G 4 HOH B 16 316 36 HOH HOH . G 4 HOH B 17 317 37 HOH HOH . G 4 HOH B 18 318 40 HOH HOH . G 4 HOH B 19 319 41 HOH HOH . H 4 HOH C 1 301 8 HOH HOH . H 4 HOH C 2 302 12 HOH HOH . H 4 HOH C 3 303 29 HOH HOH . H 4 HOH C 4 304 42 HOH HOH . I 4 HOH D 1 301 1 HOH HOH . I 4 HOH D 2 302 2 HOH HOH . I 4 HOH D 3 303 3 HOH HOH . I 4 HOH D 4 304 6 HOH HOH . I 4 HOH D 5 305 9 HOH HOH . I 4 HOH D 6 306 10 HOH HOH . I 4 HOH D 7 307 13 HOH HOH . I 4 HOH D 8 308 20 HOH HOH . I 4 HOH D 9 309 23 HOH HOH . I 4 HOH D 10 310 24 HOH HOH . I 4 HOH D 11 311 25 HOH HOH . I 4 HOH D 12 312 26 HOH HOH . I 4 HOH D 13 313 28 HOH HOH . I 4 HOH D 14 314 30 HOH HOH . I 4 HOH D 15 315 31 HOH HOH . I 4 HOH D 16 316 33 HOH HOH . I 4 HOH D 17 317 35 HOH HOH . I 4 HOH D 18 318 38 HOH HOH . I 4 HOH D 19 319 39 HOH HOH . I 4 HOH D 20 320 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 55.264 7.794 64.819 1 70.13 ? C1 GOL 201 C 1 HETATM 2 O O1 GOL . . . E 3 56.585 7.872 65.326 1 67.74 ? O1 GOL 201 C 1 HETATM 3 C C2 GOL . . . E 3 54.519 9.108 65.051 1 84.37 ? C2 GOL 201 C 1 HETATM 4 O O2 GOL . . . E 3 54.002 9.119 66.362 1 61.14 ? O2 GOL 201 C 1 HETATM 5 C C3 GOL . . . E 3 53.352 9.252 64.068 1 105.67 ? C3 GOL 201 C 1 HETATM 6 O O3 GOL . . . E 3 52.899 10.595 64.016 1 94.46 ? O3 GOL 201 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #