data_4D8U # _model_server_result.job_id TXFKFn-964XkzFEzSOgcKg _model_server_result.datetime_utc '2024-12-02 22:26:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 4D8U # _exptl.entry_id 4D8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.1 _cell.angle_gamma 90 _cell.entry_id 4D8U _cell.length_a 181.463 _cell.length_b 158.14 _cell.length_c 181.925 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q,R 1 1 C,D,K,L,S,T 2 1 E,F,M,N,U,V 3 1 G,H,O,P,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 64 A ASN 50 1_555 A N LLP 65 A LLP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C LLP 65 A LLP 51 1_555 A N LEU 66 A LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 B C ASN 64 B ASN 50 1_555 B N LLP 65 B LLP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C LLP 65 B LLP 51 1_555 B N LEU 66 B LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 C C ASN 64 C ASN 50 1_555 C N LLP 65 C LLP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 C C LLP 65 C LLP 51 1_555 C N LEU 66 C LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 D C ASN 64 D ASN 50 1_555 D N LLP 65 D LLP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 D C LLP 65 D LLP 51 1_555 D N LEU 66 D LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale9 E C ASN 64 E ASN 50 1_555 E N LLP 65 E LLP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 E C LLP 65 E LLP 51 1_555 E N LEU 66 E LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 F C ASN 64 F ASN 50 1_555 F N LLP 65 F LLP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 F C LLP 65 F LLP 51 1_555 F N LEU 66 F LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 G C ASN 64 G ASN 50 1_555 G N LLP 65 G LLP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 G C LLP 65 G LLP 51 1_555 G N LEU 66 G LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale15 H C ASN 64 H ASN 50 1_555 H N LLP 65 H LLP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 H C LLP 65 H LLP 51 1_555 H N LEU 66 H LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 307 n n P O2 PO4 sing 308 n n P O3 PO4 sing 309 n n P O4 PO4 sing 310 n n # _atom_sites.entry_id 4D8U _atom_sites.fract_transf_matrix[1][1] 0.005511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000395 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 PO4 A 1 401 1 PO4 PO4 . J 2 PO4 B 1 401 2 PO4 PO4 . K 2 PO4 C 1 401 3 PO4 PO4 . L 2 PO4 D 1 401 4 PO4 PO4 . M 2 PO4 E 1 401 5 PO4 PO4 . N 2 PO4 F 1 401 7 PO4 PO4 . O 2 PO4 G 1 401 1 PO4 PO4 . P 2 PO4 H 1 401 8 PO4 PO4 . Q 3 HOH A 1 501 3 HOH HOH . Q 3 HOH A 2 502 4 HOH HOH . Q 3 HOH A 3 503 11 HOH HOH . Q 3 HOH A 4 504 16 HOH HOH . Q 3 HOH A 5 505 17 HOH HOH . Q 3 HOH A 6 506 20 HOH HOH . R 3 HOH B 1 501 12 HOH HOH . S 3 HOH C 1 501 6 HOH HOH . T 3 HOH D 1 501 7 HOH HOH . T 3 HOH D 2 502 13 HOH HOH . U 3 HOH E 1 501 14 HOH HOH . V 3 HOH F 1 501 2 HOH HOH . W 3 HOH H 1 501 10 HOH HOH . W 3 HOH H 2 502 18 HOH HOH . W 3 HOH H 3 503 19 HOH HOH . W 3 HOH H 4 504 21 HOH HOH . W 3 HOH H 5 505 22 HOH HOH . W 3 HOH H 6 506 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . N 2 30.469 60.088 16.465 1 155.06 ? P PO4 401 F 1 HETATM 2 O O1 PO4 . . . N 2 29.465 60.574 15.444 1 155.06 ? O1 PO4 401 F 1 HETATM 3 O O2 PO4 . . . N 2 31.874 60.367 15.978 1 154.6 ? O2 PO4 401 F 1 HETATM 4 O O3 PO4 . . . N 2 30.3 58.604 16.678 1 154.45 ? O3 PO4 401 F 1 HETATM 5 O O4 PO4 . . . N 2 30.225 60.819 17.762 1 155.04 ? O4 PO4 401 F 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #