data_4D8Z
#
_model_server_result.job_id            oLIOPgpQe-hwnUCRRJRH4g 
_model_server_result.datetime_utc      '2024-11-23 21:45:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4d8z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":305}' 
#
_entry.id    4D8Z 
#
_exptl.entry_id    4D8Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              265.225 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3R)-3-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)butanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4D8Z 
_cell.length_a            98.732 
_cell.length_b            98.732 
_cell.length_c            263.137 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4D8Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,N 1 1,2 
B,H,I,J,K,L,M,O 2 1,3 
B,H,I,J,K,L,M,O 3 1,3 
A,C,D,E,F,G,N 3 4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -49.366 85.50442 0 
3 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -98.732 0 0 
4 'crystal symmetry operation' 3_455 -x+y-1,-x,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -98.732 0 87.712333 
5 'crystal symmetry operation' 6_555 x-y,x,z+1/3 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 87.712333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 M N N 
#
_chem_comp.formula           'C10 H11 N5 O4' 
_chem_comp.formula_weight    265.225 
_chem_comp.id                0J2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3R)-3-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C3 0J2 doub 1 n n 
C3 O1 0J2 sing 2 n n 
C3 C1 0J2 sing 3 n n 
C1 C4 0J2 sing 4 n n 
C4 C2 0J2 sing 5 n n 
C4 C8 0J2 sing 6 n n 
N1 C8 0J2 doub 7 n n 
N1 N2 0J2 sing 8 n n 
C8 C9 0J2 sing 9 n n 
N2 C7 0J2 sing 10 n n 
C9 O4 0J2 doub 11 n n 
C9 C6 0J2 sing 12 n n 
C7 C6 0J2 doub 13 n n 
C7 N5 0J2 sing 14 n n 
C6 C5 0J2 sing 15 n n 
N5 C10 0J2 doub 16 n n 
C5 O3 0J2 doub 17 n n 
C5 N4 0J2 sing 18 n n 
C10 N4 0J2 sing 19 n n 
C10 N3 0J2 sing 20 n n 
C1 H1 0J2 sing 21 n n 
C1 H2 0J2 sing 22 n n 
C2 H3 0J2 sing 23 n n 
C2 H4 0J2 sing 24 n n 
C2 H5 0J2 sing 25 n n 
O1 H6 0J2 sing 26 n n 
C4 H7 0J2 sing 27 n n 
N3 H8 0J2 sing 28 n n 
N3 H9 0J2 sing 29 n n 
N4 H10 0J2 sing 30 n n 
N2 H11 0J2 sing 31 n n 
#
_atom_sites.entry_id                     4D8Z 
_atom_sites.fract_transf_matrix[1][1]    0.010128 
_atom_sites.fract_transf_matrix[1][2]    0.005848 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011695 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 301 2 SO4 SO4 . 
D 2 SO4 A 1 302 6 SO4 SO4 . 
E 2 SO4 A 1 303 1 SO4 SO4 . 
F 2 SO4 A 1 304 3 SO4 SO4 . 
G 3 0J2 A 1 305 1 0J2 0J2 . 
H 2 SO4 B 1 301 1 SO4 SO4 . 
I 2 SO4 B 1 302 3 SO4 SO4 . 
J 2 SO4 B 1 303 5 SO4 SO4 . 
K 2 SO4 B 1 304 2 SO4 SO4 . 
L 2 SO4 B 1 305 4 SO4 SO4 . 
M 3 0J2 B 1 306 1 0J2 0J2 . 
N 4 HOH A 1 401 1 HOH HOH . 
N 4 HOH A 2 402 4 HOH HOH . 
N 4 HOH A 3 403 6 HOH HOH . 
N 4 HOH A 4 404 7 HOH HOH . 
N 4 HOH A 5 405 12 HOH HOH . 
N 4 HOH A 6 406 13 HOH HOH . 
N 4 HOH A 7 407 14 HOH HOH . 
N 4 HOH A 8 408 22 HOH HOH . 
N 4 HOH A 9 409 27 HOH HOH . 
N 4 HOH A 10 410 31 HOH HOH . 
N 4 HOH A 11 411 33 HOH HOH . 
N 4 HOH A 12 412 34 HOH HOH . 
N 4 HOH A 13 413 39 HOH HOH . 
N 4 HOH A 14 414 40 HOH HOH . 
N 4 HOH A 15 415 42 HOH HOH . 
N 4 HOH A 16 416 45 HOH HOH . 
N 4 HOH A 17 417 50 HOH HOH . 
N 4 HOH A 18 418 52 HOH HOH . 
N 4 HOH A 19 419 53 HOH HOH . 
N 4 HOH A 20 420 66 HOH HOH . 
N 4 HOH A 21 421 74 HOH HOH . 
N 4 HOH A 22 422 77 HOH HOH . 
N 4 HOH A 23 423 81 HOH HOH . 
N 4 HOH A 24 424 82 HOH HOH . 
N 4 HOH A 25 425 1 HOH HOH . 
O 4 HOH B 1 401 2 HOH HOH . 
O 4 HOH B 2 402 3 HOH HOH . 
O 4 HOH B 3 403 5 HOH HOH . 
O 4 HOH B 4 404 8 HOH HOH . 
O 4 HOH B 5 405 9 HOH HOH . 
O 4 HOH B 6 406 10 HOH HOH . 
O 4 HOH B 7 407 11 HOH HOH . 
O 4 HOH B 8 408 15 HOH HOH . 
O 4 HOH B 9 409 16 HOH HOH . 
O 4 HOH B 10 410 17 HOH HOH . 
O 4 HOH B 11 411 18 HOH HOH . 
O 4 HOH B 12 412 20 HOH HOH . 
O 4 HOH B 13 413 25 HOH HOH . 
O 4 HOH B 14 414 28 HOH HOH . 
O 4 HOH B 15 415 32 HOH HOH . 
O 4 HOH B 16 416 36 HOH HOH . 
O 4 HOH B 17 417 37 HOH HOH . 
O 4 HOH B 18 418 41 HOH HOH . 
O 4 HOH B 19 419 43 HOH HOH . 
O 4 HOH B 20 420 47 HOH HOH . 
O 4 HOH B 21 421 48 HOH HOH . 
O 4 HOH B 22 422 51 HOH HOH . 
O 4 HOH B 23 423 54 HOH HOH . 
O 4 HOH B 24 424 61 HOH HOH . 
O 4 HOH B 25 425 62 HOH HOH . 
O 4 HOH B 26 426 70 HOH HOH . 
O 4 HOH B 27 427 71 HOH HOH . 
O 4 HOH B 28 428 72 HOH HOH . 
O 4 HOH B 29 429 73 HOH HOH . 
O 4 HOH B 30 430 75 HOH HOH . 
O 4 HOH B 31 431 76 HOH HOH . 
O 4 HOH B 32 432 80 HOH HOH . 
O 4 HOH B 33 433 1 HOH HOH . 
O 4 HOH B 34 434 2 HOH HOH . 
O 4 HOH B 35 435 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 0J2 . . . G 3 -11.7 25.9 9.531 1 67.68 ? C1 0J2 305 A 1 
HETATM 2 C C2 0J2 . . . G 3 -10.049 25.923 7.741 1 54.97 ? C2 0J2 305 A 1 
HETATM 3 C C3 0J2 . . . G 3 -13.073 26.324 9.918 1 72.05 ? C3 0J2 305 A 1 
HETATM 4 O O1 0J2 . . . G 3 -13.47 27.502 9.67 1 72.94 ? O1 0J2 305 A 1 
HETATM 5 O O2 0J2 . . . G 3 -13.878 25.439 10.302 1 71.3 ? O2 0J2 305 A 1 
HETATM 6 N N1 0J2 . . . G 3 -12.703 24.397 7.246 1 57.3 ? N1 0J2 305 A 1 
HETATM 7 N N2 0J2 . . . G 3 -13.551 23.833 6.337 1 56.89 ? N2 0J2 305 A 1 
HETATM 8 O O3 0J2 . . . G 3 -14.281 27.913 3.758 1 62.97 ? O3 0J2 305 A 1 
HETATM 9 C C4 0J2 . . . G 3 -11.44 26.311 8.118 1 60.54 ? C4 0J2 305 A 1 
HETATM 10 N N3 0J2 . . . G 3 -16.457 23.702 2.49 1 55.51 ? N3 0J2 305 A 1 
HETATM 11 C C5 0J2 . . . G 3 -14.534 26.58 3.99 1 62.35 ? C5 0J2 305 A 1 
HETATM 12 C C6 0J2 . . . G 3 -13.906 25.885 5.089 1 61.14 ? C6 0J2 305 A 1 
HETATM 13 N N4 0J2 . . . G 3 -15.387 25.88 3.128 1 61.91 ? N4 0J2 305 A 1 
HETATM 14 C C7 0J2 . . . G 3 -14.164 24.558 5.258 1 60.8 ? C7 0J2 305 A 1 
HETATM 15 C C8 0J2 . . . G 3 -12.406 25.673 7.169 1 60.51 ? C8 0J2 305 A 1 
HETATM 16 C C9 0J2 . . . G 3 -12.988 26.503 6.078 1 61.51 ? C9 0J2 305 A 1 
HETATM 17 N N5 0J2 . . . G 3 -14.989 23.84 4.435 1 67.22 ? N5 0J2 305 A 1 
HETATM 18 O O4 0J2 . . . G 3 -12.697 27.847 6.037 1 60.22 ? O4 0J2 305 A 1 
HETATM 19 C C10 0J2 . . . G 3 -15.618 24.458 3.349 1 62.33 ? C10 0J2 305 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#