data_4D9T # _model_server_result.job_id 1dygbR6Yaax-KlWUbiV04A _model_server_result.datetime_utc '2024-12-21 17:16:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 4D9T # _exptl.entry_id 4D9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.423 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2S)-3-{4-amino-7-[(1E)-3-hydroxyprop-1-en-1-yl]-5-(4-methylphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl}-2-cyanopropanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4D9T _cell.length_a 46.7 _cell.length_b 46.7 _cell.length_c 294.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -46.7 46.7 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 181 A CYS 579 1_555 A SG CYS 181 A CYS 579 7_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 A O GLY 73 A GLY 471 1_555 C NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 A O HIS 75 A HIS 473 1_555 C NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc3 A O ILE 78 A ILE 476 1_555 C NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 A OG1 THR 80 A THR 478 1_555 C NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc5 C NA NA . A NA 901 1_555 D O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? # _chem_comp.formula 'C21 H21 N5 O3' _chem_comp.formula_weight 391.423 _chem_comp.id 0JG _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2S)-3-{4-amino-7-[(1E)-3-hydroxyprop-1-en-1-yl]-5-(4-methylphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl}-2-cyanopropanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(E)-methyl 3-(4-amino-7-(3-hydroxypropyl)-5-p-tolyl-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-2-cyanoacrylate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C08 0JG sing 1 n n C08 C07 0JG sing 2 n n C07 C06 0JG doub 3 e n C06 N05 0JG sing 4 n n N27 C28 0JG doub 5 n y N27 C04 0JG sing 6 n y C28 N29 0JG sing 7 n y N05 C04 0JG sing 8 n y N05 C10 0JG sing 9 n y C04 C03 0JG doub 10 n y N29 C02 0JG doub 11 n y C10 C11 0JG sing 12 n n C10 C19 0JG doub 13 n y C03 C02 0JG sing 14 n y C03 C19 0JG sing 15 n y C17 N18 0JG trip 16 n n C17 C12 0JG sing 17 n n C12 C11 0JG sing 18 n n C12 C13 0JG sing 19 n n C02 N01 0JG sing 20 n n O14 C13 0JG sing 21 n n O14 C15 0JG sing 22 n n C19 C20 0JG sing 23 n n C13 O16 0JG doub 24 n n C20 C26 0JG doub 25 n y C20 C21 0JG sing 26 n y C26 C25 0JG sing 27 n y C21 C22 0JG doub 28 n y C25 C23 0JG doub 29 n y C22 C23 0JG sing 30 n y C23 C24 0JG sing 31 n n N01 H1 0JG sing 32 n n N01 H2 0JG sing 33 n n C06 H3 0JG sing 34 n n C07 H4 0JG sing 35 n n C08 H5 0JG sing 36 n n C08 H6 0JG sing 37 n n O09 H7 0JG sing 38 n n C11 H8 0JG sing 39 n n C11 H9 0JG sing 40 n n C12 H10 0JG sing 41 n n C15 H11 0JG sing 42 n n C15 H12 0JG sing 43 n n C15 H13 0JG sing 44 n n C21 H14 0JG sing 45 n n C22 H15 0JG sing 46 n n C24 H16 0JG sing 47 n n C24 H17 0JG sing 48 n n C24 H18 0JG sing 49 n n C25 H19 0JG sing 50 n n C26 H20 0JG sing 51 n n C28 H21 0JG sing 52 n n # _atom_sites.entry_id 4D9T _atom_sites.fract_transf_matrix[1][1] 0.021413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0JG A 1 900 900 0JG 0JG . C 3 NA A 1 901 901 NA NA . D 4 HOH A 1 1001 1 HOH HOH . D 4 HOH A 2 1002 2 HOH HOH . D 4 HOH A 3 1003 3 HOH HOH . D 4 HOH A 4 1004 4 HOH HOH . D 4 HOH A 5 1005 5 HOH HOH . D 4 HOH A 6 1006 6 HOH HOH . D 4 HOH A 7 1007 7 HOH HOH . D 4 HOH A 8 1008 8 HOH HOH . D 4 HOH A 9 1009 9 HOH HOH . D 4 HOH A 10 1010 10 HOH HOH . D 4 HOH A 11 1011 11 HOH HOH . D 4 HOH A 12 1012 12 HOH HOH . D 4 HOH A 13 1013 13 HOH HOH . D 4 HOH A 14 1014 14 HOH HOH . D 4 HOH A 15 1015 15 HOH HOH . D 4 HOH A 16 1016 16 HOH HOH . D 4 HOH A 17 1017 17 HOH HOH . D 4 HOH A 18 1018 18 HOH HOH . D 4 HOH A 19 1019 19 HOH HOH . D 4 HOH A 20 1020 20 HOH HOH . D 4 HOH A 21 1021 21 HOH HOH . D 4 HOH A 22 1022 22 HOH HOH . D 4 HOH A 23 1023 23 HOH HOH . D 4 HOH A 24 1024 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 0JG . . . B 2 -33.857 14.937 -19.937 1 59.92 ? N01 0JG 900 A 1 HETATM 2 C C02 0JG . . . B 2 -33.458 14.618 -21.281 1 61.44 ? C02 0JG 900 A 1 HETATM 3 C C03 0JG . . . B 2 -32.352 13.706 -21.548 1 66.09 ? C03 0JG 900 A 1 HETATM 4 C C04 0JG . . . B 2 -32.013 13.424 -22.931 1 71.15 ? C04 0JG 900 A 1 HETATM 5 N N05 0JG . . . B 2 -30.881 12.485 -22.97 1 77.77 ? N05 0JG 900 A 1 HETATM 6 C C06 0JG . . . B 2 -30.302 12.008 -24.25 1 78.54 ? C06 0JG 900 A 1 HETATM 7 C C07 0JG . . . B 2 -29.13 12.739 -24.865 1 80.74 ? C07 0JG 900 A 1 HETATM 8 C C08 0JG . . . B 2 -28.357 11.956 -25.899 1 88.67 ? C08 0JG 900 A 1 HETATM 9 O O09 0JG . . . B 2 -28.964 11.747 -27.126 1 90.53 ? O09 0JG 900 A 1 HETATM 10 C C10 0JG . . . B 2 -30.453 12.14 -21.556 1 78.15 ? C10 0JG 900 A 1 HETATM 11 C C11 0JG . . . B 2 -29.534 11.212 -20.787 1 90.02 ? C11 0JG 900 A 1 HETATM 12 C C12 0JG . . . B 2 -28.22 11.078 -21.425 1 98.57 ? C12 0JG 900 A 1 HETATM 13 C C13 0JG . . . B 2 -27.522 9.977 -20.667 1 109.3 ? C13 0JG 900 A 1 HETATM 14 O O14 0JG . . . B 2 -27.582 8.762 -21.071 1 114.87 ? O14 0JG 900 A 1 HETATM 15 C C15 0JG . . . B 2 -26.934 7.742 -20.375 1 112.83 ? C15 0JG 900 A 1 HETATM 16 O O16 0JG . . . B 2 -26.876 10.255 -19.624 1 107.15 ? O16 0JG 900 A 1 HETATM 17 C C17 0JG . . . B 2 -27.505 12.335 -21.449 1 93.11 ? C17 0JG 900 A 1 HETATM 18 N N18 0JG . . . B 2 -26.962 13.3 -21.432 1 88.12 ? N18 0JG 900 A 1 HETATM 19 C C19 0JG . . . B 2 -31.368 12.947 -20.716 1 68.89 ? C19 0JG 900 A 1 HETATM 20 C C20 0JG . . . B 2 -31.292 12.842 -19.225 1 62.96 ? C20 0JG 900 A 1 HETATM 21 C C21 0JG . . . B 2 -32.298 12.059 -18.508 1 60.05 ? C21 0JG 900 A 1 HETATM 22 C C22 0JG . . . B 2 -32.198 11.93 -17.061 1 65.83 ? C22 0JG 900 A 1 HETATM 23 C C23 0JG . . . B 2 -31.142 12.533 -16.37 1 63.3 ? C23 0JG 900 A 1 HETATM 24 C C24 0JG . . . B 2 -31.073 12.4 -14.919 1 66.84 ? C24 0JG 900 A 1 HETATM 25 C C25 0JG . . . B 2 -30.099 13.321 -17.099 1 60.11 ? C25 0JG 900 A 1 HETATM 26 C C26 0JG . . . B 2 -30.199 13.449 -18.514 1 62.77 ? C26 0JG 900 A 1 HETATM 27 N N27 0JG . . . B 2 -32.732 14.009 -23.96 1 70.68 ? N27 0JG 900 A 1 HETATM 28 C C28 0JG . . . B 2 -33.797 14.883 -23.669 1 66.76 ? C28 0JG 900 A 1 HETATM 29 N N29 0JG . . . B 2 -34.148 15.179 -22.363 1 64 ? N29 0JG 900 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #