data_4D9Y # _model_server_result.job_id h2jQYN9vIq5YgMQ43TV82Q _model_server_result.datetime_utc '2024-11-27 17:00:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4d9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4D9Y # _exptl.entry_id 4D9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.372 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4D9Y _cell.length_a 30.231 _cell.length_b 30.231 _cell.length_c 119.247 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DG 6 B DG 212 1_555 F CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 F CA CA . B CA 501 1_555 D OP1 DG 6 D DG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 A DG 102 1_555 B N3 DC 5 B DC 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 A DG 102 1_555 B O2 DC 5 B DC 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 A DG 102 1_555 B N4 DC 5 B DC 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog4 A N2 DG 2 A DG 102 1_555 D N3 DG 6 D DG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog5 A N3 DG 2 A DG 102 1_555 D N2 DG 6 D DG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 A DT 103 1_555 B N1 DA 4 B DA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 A DT 103 1_555 B N6 DA 4 B DA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 4 A DA 104 1_555 B N3 DT 3 B DT 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 4 A DA 104 1_555 B O4 DT 3 B DT 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 5 A DC 105 1_555 B N1 DG 2 B DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 5 A DC 105 1_555 B O6 DG 2 B DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 5 A DC 105 1_555 B N2 DG 2 B DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog13 B N2 DG 6 B DG 212 1_555 C N3 DG 2 C DG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog14 B N3 DG 6 B DG 212 1_555 C N2 DG 2 C DG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N1 DG 2 C DG 302 1_555 D N3 DC 5 D DC 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N2 DG 2 C DG 302 1_555 D O2 DC 5 D DC 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C O6 DG 2 C DG 302 1_555 D N4 DC 5 D DC 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N3 DT 3 C DT 303 1_555 D N1 DA 4 D DA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O4 DT 3 C DT 303 1_555 D N6 DA 4 D DA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog20 C N1 DA 4 C DA 304 1_555 D N3 DT 3 D DT 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N3 DC 5 C DC 305 1_555 D N1 DG 2 D DG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N4 DC 5 C DC 305 1_555 D O6 DG 2 D DG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C O2 DC 5 C DC 305 1_555 D N2 DG 2 D DG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H18 N O4 1' _chem_comp.formula_weight 348.372 _chem_comp.id CTI _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms chelerythrine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CTI doub 1 n y C1 C22 CTI sing 2 n y C2 C3 CTI sing 3 n y C2 C5 CTI sing 4 n y C3 C4 CTI doub 5 n y C3 C8 CTI sing 6 n y C4 C23 CTI sing 7 n y C5 C6 CTI doub 8 n y C5 N9 CTI sing 9 n y C6 C7 CTI sing 10 n y C6 C10 CTI sing 11 n y C7 C8 CTI doub 12 n y N9 C12 CTI doub 13 n y N9 C13 CTI sing 14 n n C10 C11 CTI doub 15 n y C10 C16 CTI sing 16 n y C11 C12 CTI sing 17 n y C11 C17 CTI sing 18 n y C14 C15 CTI sing 19 n y C14 C17 CTI doub 20 n y C14 O20 CTI sing 21 n n C15 C16 CTI doub 22 n y C17 O18 CTI sing 23 n n O18 C19 CTI sing 24 n n O20 C21 CTI sing 25 n n C22 C23 CTI doub 26 n y C22 O24 CTI sing 27 n n C23 O26 CTI sing 28 n n O24 C25 CTI sing 29 n n C25 O26 CTI sing 30 n n C1 H1 CTI sing 31 n n C4 H4 CTI sing 32 n n C7 H7 CTI sing 33 n n C8 H8 CTI sing 34 n n C12 H12 CTI sing 35 n n C13 H13 CTI sing 36 n n C13 H13A CTI sing 37 n n C13 H13B CTI sing 38 n n C15 H15 CTI sing 39 n n C16 H16 CTI sing 40 n n C19 H19 CTI sing 41 n n C19 H19A CTI sing 42 n n C19 H19B CTI sing 43 n n C21 H21 CTI sing 44 n n C21 H21A CTI sing 45 n n C21 H21B CTI sing 46 n n C25 H25 CTI sing 47 n n C25 H25A CTI sing 48 n n # _atom_sites.entry_id 4D9Y _atom_sites.fract_transf_matrix[1][1] 0.033079 _atom_sites.fract_transf_matrix[1][2] 0.019098 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.038196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CTI A 1 201 606 CTI CTI . F 3 CA B 1 501 501 CA CA . G 4 HOH A 1 301 709 HOH HOH . H 4 HOH B 1 601 708 HOH HOH . H 4 HOH B 2 602 701 HOH HOH . H 4 HOH B 3 603 702 HOH HOH . I 4 HOH C 1 401 703 HOH HOH . I 4 HOH C 2 402 710 HOH HOH . J 4 HOH D 1 501 704 HOH HOH . J 4 HOH D 2 502 705 HOH HOH . J 4 HOH D 3 503 706 HOH HOH . J 4 HOH D 4 504 707 HOH HOH . J 4 HOH D 5 505 711 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CTI . . . E 2 -2.128 -9.326 10.166 1 61.25 ? C1 CTI 201 A 1 HETATM 2 C C2 CTI . . . E 2 -2.555 -8.01 10.312 1 65.98 ? C2 CTI 201 A 1 HETATM 3 C C3 CTI . . . E 2 -2.878 -7.7 11.642 1 65.4 ? C3 CTI 201 A 1 HETATM 4 C C4 CTI . . . E 2 -2.784 -8.627 12.67 1 57.65 ? C4 CTI 201 A 1 HETATM 5 C C5 CTI . . . E 2 -2.664 -7.038 9.312 1 65.61 ? C5 CTI 201 A 1 HETATM 6 C C6 CTI . . . E 2 -3.13 -5.776 9.741 1 66.21 ? C6 CTI 201 A 1 HETATM 7 C C7 CTI . . . E 2 -3.469 -5.481 11.056 1 70.6 ? C7 CTI 201 A 1 HETATM 8 C C8 CTI . . . E 2 -3.324 -6.443 12.032 1 72.03 ? C8 CTI 201 A 1 HETATM 9 N N9 CTI . . . E 2 -2.384 -7.1 7.955 1 66.29 ? N9 CTI 201 A 1 HETATM 10 C C10 CTI . . . E 2 -3.301 -4.676 8.904 1 64.33 ? C10 CTI 201 A 1 HETATM 11 C C11 CTI . . . E 2 -3.075 -4.795 7.544 1 63.96 ? C11 CTI 201 A 1 HETATM 12 C C12 CTI . . . E 2 -2.644 -6.02 7.085 1 67.71 ? C12 CTI 201 A 1 HETATM 13 C C13 CTI . . . E 2 -1.926 -8.206 7.105 1 59.05 ? C13 CTI 201 A 1 HETATM 14 C C14 CTI . . . E 2 -3.715 -2.501 7.234 1 70.02 ? C14 CTI 201 A 1 HETATM 15 C C15 CTI . . . E 2 -3.981 -2.392 8.596 1 60.83 ? C15 CTI 201 A 1 HETATM 16 C C16 CTI . . . E 2 -3.763 -3.475 9.441 1 58 ? C16 CTI 201 A 1 HETATM 17 C C17 CTI . . . E 2 -3.279 -3.71 6.698 1 68.06 ? C17 CTI 201 A 1 HETATM 18 O O18 CTI . . . E 2 -2.992 -3.805 5.367 1 71.16 ? O18 CTI 201 A 1 HETATM 19 C C19 CTI . . . E 2 -3.9 -4.435 4.48 1 91.05 ? C19 CTI 201 A 1 HETATM 20 O O20 CTI . . . E 2 -3.895 -1.406 6.423 1 72.43 ? O20 CTI 201 A 1 HETATM 21 C C21 CTI . . . E 2 -4.341 -0.211 7.065 1 41.48 ? C21 CTI 201 A 1 HETATM 22 C C22 CTI . . . E 2 -2.185 -10.308 11.137 1 55.69 ? C22 CTI 201 A 1 HETATM 23 C C23 CTI . . . E 2 -2.606 -9.974 12.413 1 52.88 ? C23 CTI 201 A 1 HETATM 24 O O24 CTI . . . E 2 -1.596 -11.55 11.189 1 65.54 ? O24 CTI 201 A 1 HETATM 25 C C25 CTI . . . E 2 -1.383 -11.801 12.578 1 60.96 ? C25 CTI 201 A 1 HETATM 26 O O26 CTI . . . E 2 -2.35 -11.009 13.277 1 55.91 ? O26 CTI 201 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #