data_4DA1
#
_model_server_result.job_id            PTQN2is86md5wF5jEH1X4w 
_model_server_result.datetime_utc      '2024-11-04 22:46:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4da1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4DA1 
#
_exptl.entry_id    4DA1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DA1 
_cell.length_a            125.276 
_cell.length_b            125.276 
_cell.length_c            61.66 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DA1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 243 A CYS 214 1_555 A SG CYS 339 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
covale ? covale1 A SG CYS 126 A CYS 97 1_555 B S2 BME . A BME 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale2 A SG CYS 174 A CYS 145 1_555 C S2 BME . A BME 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale3 A SG CYS 345 A CYS 316 1_555 D S2 BME . A BME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OD2 ASP 141 A ASP 112 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc2 A OD2 ASP 156 A ASP 127 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc3 A OD1 ASP 156 A ASP 127 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 A O GLY 157 A GLY 128 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc5 A OE1 GLU 172 A GLU 143 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc6 A OD1 ASP 327 A ASP 298 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc7 A OD2 ASP 366 A ASP 337 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc8 E MG MG . A MG 504 1_555 H O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc9 E MG MG . A MG 504 1_555 H O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc10 E MG MG . A MG 504 1_555 H O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc11 F MG MG . A MG 505 1_555 H O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc12 F MG MG . A MG 505 1_555 H O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc13 F MG MG . A MG 505 1_555 H O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc14 F MG MG . A MG 505 1_555 H O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc15 G MG MG . A MG 506 1_555 H O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc16 G MG MG . A MG 506 1_555 H O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc17 G MG MG . A MG 506 1_555 H O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc18 G MG MG . A MG 506 1_555 H O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BME sing 70 n n 
C1 O1 BME sing 71 n n 
C1 H11 BME sing 72 n n 
C1 H12 BME sing 73 n n 
C2 S2 BME sing 74 n n 
C2 H21 BME sing 75 n n 
C2 H22 BME sing 76 n n 
O1 HO1 BME sing 77 n n 
S2 HS2 BME sing 78 n n 
#
_atom_sites.entry_id                     4DA1 
_atom_sites.fract_transf_matrix[1][1]    0.007982 
_atom_sites.fract_transf_matrix[1][2]    0.004609 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009217 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016218 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BME A 1 501 501 BME BME . 
C 2 BME A 1 502 502 BME BME . 
D 2 BME A 1 503 503 BME BME . 
E 3 MG A 1 504 1 MG MG . 
F 3 MG A 1 505 2 MG MG . 
G 3 MG A 1 506 1 MG MG . 
H 4 HOH A 1 601 1 HOH HOH . 
H 4 HOH A 2 602 2 HOH HOH . 
H 4 HOH A 3 603 3 HOH HOH . 
H 4 HOH A 4 604 4 HOH HOH . 
H 4 HOH A 5 605 5 HOH HOH . 
H 4 HOH A 6 606 6 HOH HOH . 
H 4 HOH A 7 607 7 HOH HOH . 
H 4 HOH A 8 608 8 HOH HOH . 
H 4 HOH A 9 609 9 HOH HOH . 
H 4 HOH A 10 610 10 HOH HOH . 
H 4 HOH A 11 611 11 HOH HOH . 
H 4 HOH A 12 612 12 HOH HOH . 
H 4 HOH A 13 613 13 HOH HOH . 
H 4 HOH A 14 614 14 HOH HOH . 
H 4 HOH A 15 615 15 HOH HOH . 
H 4 HOH A 16 616 16 HOH HOH . 
H 4 HOH A 17 617 17 HOH HOH . 
H 4 HOH A 18 618 18 HOH HOH . 
H 4 HOH A 19 619 19 HOH HOH . 
H 4 HOH A 20 620 21 HOH HOH . 
H 4 HOH A 21 621 22 HOH HOH . 
H 4 HOH A 22 622 23 HOH HOH . 
H 4 HOH A 23 623 24 HOH HOH . 
H 4 HOH A 24 624 25 HOH HOH . 
H 4 HOH A 25 625 26 HOH HOH . 
H 4 HOH A 26 626 27 HOH HOH . 
H 4 HOH A 27 627 28 HOH HOH . 
H 4 HOH A 28 628 29 HOH HOH . 
H 4 HOH A 29 629 30 HOH HOH . 
H 4 HOH A 30 630 31 HOH HOH . 
H 4 HOH A 31 631 32 HOH HOH . 
H 4 HOH A 32 632 33 HOH HOH . 
H 4 HOH A 33 633 34 HOH HOH . 
H 4 HOH A 34 634 35 HOH HOH . 
H 4 HOH A 35 635 36 HOH HOH . 
H 4 HOH A 36 636 37 HOH HOH . 
H 4 HOH A 37 637 38 HOH HOH . 
H 4 HOH A 38 638 39 HOH HOH . 
H 4 HOH A 39 639 40 HOH HOH . 
H 4 HOH A 40 640 41 HOH HOH . 
H 4 HOH A 41 641 42 HOH HOH . 
H 4 HOH A 42 642 43 HOH HOH . 
H 4 HOH A 43 643 44 HOH HOH . 
H 4 HOH A 44 644 45 HOH HOH . 
H 4 HOH A 45 645 46 HOH HOH . 
H 4 HOH A 46 646 47 HOH HOH . 
H 4 HOH A 47 647 48 HOH HOH . 
H 4 HOH A 48 648 49 HOH HOH . 
H 4 HOH A 49 649 50 HOH HOH . 
H 4 HOH A 50 650 51 HOH HOH . 
H 4 HOH A 51 651 52 HOH HOH . 
H 4 HOH A 52 652 53 HOH HOH . 
H 4 HOH A 53 653 54 HOH HOH . 
H 4 HOH A 54 654 55 HOH HOH . 
H 4 HOH A 55 655 56 HOH HOH . 
H 4 HOH A 56 656 57 HOH HOH . 
H 4 HOH A 57 657 58 HOH HOH . 
H 4 HOH A 58 658 59 HOH HOH . 
H 4 HOH A 59 659 60 HOH HOH . 
H 4 HOH A 60 660 61 HOH HOH . 
H 4 HOH A 61 661 62 HOH HOH . 
H 4 HOH A 62 662 63 HOH HOH . 
H 4 HOH A 63 663 64 HOH HOH . 
H 4 HOH A 64 664 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . B 2 22.606 130.202 -90.79 1 104.21 ? C1 BME 501 A 1 
HETATM 2 C C2 BME . . . B 2 21.813 129.061 -91.427 1 105.54 ? C2 BME 501 A 1 
HETATM 3 O O1 BME . . . B 2 23.983 130.082 -91.08 1 100.58 ? O1 BME 501 A 1 
HETATM 4 S S2 BME . . . B 2 20.626 128.341 -90.263 1 95.03 ? S2 BME 501 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#