data_4DA6 # _model_server_result.job_id wu7gIqgKM73rgU4s8vQQ8Q _model_server_result.datetime_utc '2024-11-28 15:19:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4da6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4DA6 # _exptl.entry_id 4DA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DA6 _cell.length_a 135.551 _cell.length_b 135.551 _cell.length_c 57.772 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -67.7755 117.39061 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -135.551 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 28.886 5 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -135.551 0 28.886 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -67.7755 117.39061 28.886 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 170 n n C1 C2 GOL sing 171 n n C1 H11 GOL sing 172 n n C1 H12 GOL sing 173 n n O1 HO1 GOL sing 174 n n C2 O2 GOL sing 175 n n C2 C3 GOL sing 176 n n C2 H2 GOL sing 177 n n O2 HO2 GOL sing 178 n n C3 O3 GOL sing 179 n n C3 H31 GOL sing 180 n n C3 H32 GOL sing 181 n n O3 HO3 GOL sing 182 n n # _atom_sites.entry_id 4DA6 _atom_sites.fract_transf_matrix[1][1] 0.007377 _atom_sites.fract_transf_matrix[1][2] 0.004259 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GA2 A 1 301 1 GA2 GA2 . C 3 DMS A 1 302 2 DMS DMS . D 4 GOL A 1 303 3 GOL GOL . E 5 CL A 1 304 4 CL CL . F 5 CL A 1 305 5 CL CL . G 5 CL A 1 306 6 CL CL . H 5 CL A 1 307 7 CL CL . I 5 CL A 1 308 8 CL CL . J 6 HOH A 1 401 9 HOH HOH . J 6 HOH A 2 402 10 HOH HOH . J 6 HOH A 3 403 11 HOH HOH . J 6 HOH A 4 404 12 HOH HOH . J 6 HOH A 5 405 13 HOH HOH . J 6 HOH A 6 406 14 HOH HOH . J 6 HOH A 7 407 15 HOH HOH . J 6 HOH A 8 408 16 HOH HOH . J 6 HOH A 9 409 17 HOH HOH . J 6 HOH A 10 410 18 HOH HOH . J 6 HOH A 11 411 19 HOH HOH . J 6 HOH A 12 412 20 HOH HOH . J 6 HOH A 13 413 21 HOH HOH . J 6 HOH A 14 414 22 HOH HOH . J 6 HOH A 15 415 23 HOH HOH . J 6 HOH A 16 416 24 HOH HOH . J 6 HOH A 17 417 25 HOH HOH . J 6 HOH A 18 418 26 HOH HOH . J 6 HOH A 19 419 27 HOH HOH . J 6 HOH A 20 420 28 HOH HOH . J 6 HOH A 21 421 29 HOH HOH . J 6 HOH A 22 422 30 HOH HOH . J 6 HOH A 23 423 31 HOH HOH . J 6 HOH A 24 424 32 HOH HOH . J 6 HOH A 25 425 33 HOH HOH . J 6 HOH A 26 426 34 HOH HOH . J 6 HOH A 27 427 35 HOH HOH . J 6 HOH A 28 428 36 HOH HOH . J 6 HOH A 29 429 37 HOH HOH . J 6 HOH A 30 430 38 HOH HOH . J 6 HOH A 31 431 39 HOH HOH . J 6 HOH A 32 432 40 HOH HOH . J 6 HOH A 33 433 41 HOH HOH . J 6 HOH A 34 434 42 HOH HOH . J 6 HOH A 35 435 43 HOH HOH . J 6 HOH A 36 436 44 HOH HOH . J 6 HOH A 37 437 45 HOH HOH . J 6 HOH A 38 438 46 HOH HOH . J 6 HOH A 39 439 47 HOH HOH . J 6 HOH A 40 440 48 HOH HOH . J 6 HOH A 41 441 49 HOH HOH . J 6 HOH A 42 442 50 HOH HOH . J 6 HOH A 43 443 51 HOH HOH . J 6 HOH A 44 444 52 HOH HOH . J 6 HOH A 45 445 53 HOH HOH . J 6 HOH A 46 446 54 HOH HOH . J 6 HOH A 47 447 55 HOH HOH . J 6 HOH A 48 448 56 HOH HOH . J 6 HOH A 49 449 57 HOH HOH . J 6 HOH A 50 450 58 HOH HOH . J 6 HOH A 51 451 59 HOH HOH . J 6 HOH A 52 452 60 HOH HOH . J 6 HOH A 53 453 61 HOH HOH . J 6 HOH A 54 454 62 HOH HOH . J 6 HOH A 55 455 63 HOH HOH . J 6 HOH A 56 456 64 HOH HOH . J 6 HOH A 57 457 65 HOH HOH . J 6 HOH A 58 458 66 HOH HOH . J 6 HOH A 59 459 67 HOH HOH . J 6 HOH A 60 460 68 HOH HOH . J 6 HOH A 61 461 69 HOH HOH . J 6 HOH A 62 462 70 HOH HOH . J 6 HOH A 63 463 71 HOH HOH . J 6 HOH A 64 464 72 HOH HOH . J 6 HOH A 65 465 73 HOH HOH . J 6 HOH A 66 466 74 HOH HOH . J 6 HOH A 67 467 75 HOH HOH . J 6 HOH A 68 468 76 HOH HOH . J 6 HOH A 69 469 77 HOH HOH . J 6 HOH A 70 470 78 HOH HOH . J 6 HOH A 71 471 79 HOH HOH . J 6 HOH A 72 472 80 HOH HOH . J 6 HOH A 73 473 81 HOH HOH . J 6 HOH A 74 474 82 HOH HOH . J 6 HOH A 75 475 83 HOH HOH . J 6 HOH A 76 476 84 HOH HOH . J 6 HOH A 77 477 85 HOH HOH . J 6 HOH A 78 478 86 HOH HOH . J 6 HOH A 79 479 87 HOH HOH . J 6 HOH A 80 480 88 HOH HOH . J 6 HOH A 81 481 89 HOH HOH . J 6 HOH A 82 482 90 HOH HOH . J 6 HOH A 83 483 91 HOH HOH . J 6 HOH A 84 484 92 HOH HOH . J 6 HOH A 85 485 93 HOH HOH . J 6 HOH A 86 486 94 HOH HOH . J 6 HOH A 87 487 95 HOH HOH . J 6 HOH A 88 488 96 HOH HOH . J 6 HOH A 89 489 97 HOH HOH . J 6 HOH A 90 490 98 HOH HOH . J 6 HOH A 91 491 99 HOH HOH . J 6 HOH A 92 492 100 HOH HOH . J 6 HOH A 93 493 101 HOH HOH . J 6 HOH A 94 494 102 HOH HOH . J 6 HOH A 95 495 103 HOH HOH . J 6 HOH A 96 496 104 HOH HOH . J 6 HOH A 97 497 105 HOH HOH . J 6 HOH A 98 498 106 HOH HOH . J 6 HOH A 99 499 107 HOH HOH . J 6 HOH A 100 500 108 HOH HOH . J 6 HOH A 101 501 109 HOH HOH . J 6 HOH A 102 502 110 HOH HOH . J 6 HOH A 103 503 111 HOH HOH . J 6 HOH A 104 504 112 HOH HOH . J 6 HOH A 105 505 113 HOH HOH . J 6 HOH A 106 506 114 HOH HOH . J 6 HOH A 107 507 115 HOH HOH . J 6 HOH A 108 508 116 HOH HOH . J 6 HOH A 109 509 117 HOH HOH . J 6 HOH A 110 510 118 HOH HOH . J 6 HOH A 111 511 119 HOH HOH . J 6 HOH A 112 512 120 HOH HOH . J 6 HOH A 113 513 121 HOH HOH . J 6 HOH A 114 514 122 HOH HOH . J 6 HOH A 115 515 123 HOH HOH . J 6 HOH A 116 516 124 HOH HOH . J 6 HOH A 117 517 125 HOH HOH . J 6 HOH A 118 518 126 HOH HOH . J 6 HOH A 119 519 127 HOH HOH . J 6 HOH A 120 520 128 HOH HOH . J 6 HOH A 121 521 129 HOH HOH . J 6 HOH A 122 522 130 HOH HOH . J 6 HOH A 123 523 131 HOH HOH . J 6 HOH A 124 524 132 HOH HOH . J 6 HOH A 125 525 133 HOH HOH . J 6 HOH A 126 526 134 HOH HOH . J 6 HOH A 127 527 135 HOH HOH . J 6 HOH A 128 528 136 HOH HOH . J 6 HOH A 129 529 137 HOH HOH . J 6 HOH A 130 530 138 HOH HOH . J 6 HOH A 131 531 139 HOH HOH . J 6 HOH A 132 532 140 HOH HOH . J 6 HOH A 133 533 141 HOH HOH . J 6 HOH A 134 534 142 HOH HOH . J 6 HOH A 135 535 143 HOH HOH . J 6 HOH A 136 536 144 HOH HOH . J 6 HOH A 137 537 145 HOH HOH . J 6 HOH A 138 538 146 HOH HOH . J 6 HOH A 139 539 147 HOH HOH . J 6 HOH A 140 540 148 HOH HOH . J 6 HOH A 141 541 149 HOH HOH . J 6 HOH A 142 542 150 HOH HOH . J 6 HOH A 143 543 151 HOH HOH . J 6 HOH A 144 544 152 HOH HOH . J 6 HOH A 145 545 153 HOH HOH . J 6 HOH A 146 546 154 HOH HOH . J 6 HOH A 147 547 155 HOH HOH . J 6 HOH A 148 548 156 HOH HOH . J 6 HOH A 149 549 157 HOH HOH . J 6 HOH A 150 550 158 HOH HOH . J 6 HOH A 151 551 159 HOH HOH . J 6 HOH A 152 552 160 HOH HOH . J 6 HOH A 153 553 161 HOH HOH . J 6 HOH A 154 554 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -39.531 5.951 -0.483 0.5 34.41 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 -40.625 5.065 -0.355 0.5 32.54 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 -38.873 6.179 0.876 0.5 33.15 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 -38.391 7.505 0.961 0.5 36.96 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 -37.794 5.138 1.173 0.5 32.66 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 -38.177 4.249 2.216 0.5 30.69 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #