data_4DA7 # _model_server_result.job_id 3e9rxXLZXmsKRTH2dFVTjQ _model_server_result.datetime_utc '2024-11-07 18:35:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4da7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4DA7 # _exptl.entry_id 4DA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-HYROXYETHOXYMETHYLGUANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DA7 _cell.length_a 135.05 _cell.length_b 135.05 _cell.length_c 57.875 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -67.525 116.956731 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -135.05 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 28.9375 5 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -135.05 0 28.9375 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -67.525 116.956731 28.9375 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H11 N5 O3' _chem_comp.formula_weight 225.205 _chem_comp.id AC2 _chem_comp.mon_nstd_flag . _chem_comp.name 9-HYROXYETHOXYMETHYLGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3' O3' AC2 sing 1 n n C3' C2' AC2 sing 2 n n C3' "H3'1" AC2 sing 3 n n C3' "H3'2" AC2 sing 4 n n O3' "HO'3" AC2 sing 5 n n C2' O1' AC2 sing 6 n n C2' "H2'1" AC2 sing 7 n n C2' "H2'2" AC2 sing 8 n n O1' C1' AC2 sing 9 n n C1' N9 AC2 sing 10 n n C1' "H1'1" AC2 sing 11 n n C1' "H1'2" AC2 sing 12 n n N9 C8 AC2 sing 13 n y N9 C4 AC2 sing 14 n y C8 N7 AC2 doub 15 n y C8 H8 AC2 sing 16 n n N7 C5 AC2 sing 17 n y C5 C6 AC2 sing 18 n n C5 C4 AC2 doub 19 n y C6 O6 AC2 doub 20 n n C6 N1 AC2 sing 21 n n N1 C2 AC2 sing 22 n n N1 HN1 AC2 sing 23 n n C2 N2 AC2 sing 24 n n C2 N3 AC2 doub 25 n n N2 HN21 AC2 sing 26 n n N2 HN22 AC2 sing 27 n n N3 C4 AC2 sing 28 n n # _atom_sites.entry_id 4DA7 _atom_sites.fract_transf_matrix[1][1] 0.007405 _atom_sites.fract_transf_matrix[1][2] 0.004275 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AC2 A 1 301 1 AC2 AC2 . C 3 PO4 A 1 302 2 PO4 PO4 . D 4 HOH A 1 401 3 HOH HOH . D 4 HOH A 2 402 4 HOH HOH . D 4 HOH A 3 403 5 HOH HOH . D 4 HOH A 4 404 6 HOH HOH . D 4 HOH A 5 405 7 HOH HOH . D 4 HOH A 6 406 8 HOH HOH . D 4 HOH A 7 407 9 HOH HOH . D 4 HOH A 8 408 10 HOH HOH . D 4 HOH A 9 409 11 HOH HOH . D 4 HOH A 10 410 12 HOH HOH . D 4 HOH A 11 411 13 HOH HOH . D 4 HOH A 12 412 14 HOH HOH . D 4 HOH A 13 413 15 HOH HOH . D 4 HOH A 14 414 16 HOH HOH . D 4 HOH A 15 415 17 HOH HOH . D 4 HOH A 16 416 18 HOH HOH . D 4 HOH A 17 417 19 HOH HOH . D 4 HOH A 18 418 20 HOH HOH . D 4 HOH A 19 419 21 HOH HOH . D 4 HOH A 20 420 22 HOH HOH . D 4 HOH A 21 421 23 HOH HOH . D 4 HOH A 22 422 24 HOH HOH . D 4 HOH A 23 423 25 HOH HOH . D 4 HOH A 24 424 26 HOH HOH . D 4 HOH A 25 425 27 HOH HOH . D 4 HOH A 26 426 28 HOH HOH . D 4 HOH A 27 427 29 HOH HOH . D 4 HOH A 28 428 30 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 32 HOH HOH . D 4 HOH A 31 431 33 HOH HOH . D 4 HOH A 32 432 34 HOH HOH . D 4 HOH A 33 433 35 HOH HOH . D 4 HOH A 34 434 36 HOH HOH . D 4 HOH A 35 435 37 HOH HOH . D 4 HOH A 36 436 38 HOH HOH . D 4 HOH A 37 437 39 HOH HOH . D 4 HOH A 38 438 40 HOH HOH . D 4 HOH A 39 439 41 HOH HOH . D 4 HOH A 40 440 42 HOH HOH . D 4 HOH A 41 441 43 HOH HOH . D 4 HOH A 42 442 44 HOH HOH . D 4 HOH A 43 443 45 HOH HOH . D 4 HOH A 44 444 46 HOH HOH . D 4 HOH A 45 445 47 HOH HOH . D 4 HOH A 46 446 48 HOH HOH . D 4 HOH A 47 447 49 HOH HOH . D 4 HOH A 48 448 50 HOH HOH . D 4 HOH A 49 449 51 HOH HOH . D 4 HOH A 50 450 52 HOH HOH . D 4 HOH A 51 451 53 HOH HOH . D 4 HOH A 52 452 54 HOH HOH . D 4 HOH A 53 453 55 HOH HOH . D 4 HOH A 54 454 56 HOH HOH . D 4 HOH A 55 455 57 HOH HOH . D 4 HOH A 56 456 58 HOH HOH . D 4 HOH A 57 457 59 HOH HOH . D 4 HOH A 58 458 60 HOH HOH . D 4 HOH A 59 459 61 HOH HOH . D 4 HOH A 60 460 62 HOH HOH . D 4 HOH A 61 461 63 HOH HOH . D 4 HOH A 62 462 64 HOH HOH . D 4 HOH A 63 463 65 HOH HOH . D 4 HOH A 64 464 66 HOH HOH . D 4 HOH A 65 465 67 HOH HOH . D 4 HOH A 66 466 68 HOH HOH . D 4 HOH A 67 467 69 HOH HOH . D 4 HOH A 68 468 70 HOH HOH . D 4 HOH A 69 469 71 HOH HOH . D 4 HOH A 70 470 72 HOH HOH . D 4 HOH A 71 471 73 HOH HOH . D 4 HOH A 72 472 74 HOH HOH . D 4 HOH A 73 473 75 HOH HOH . D 4 HOH A 74 474 76 HOH HOH . D 4 HOH A 75 475 77 HOH HOH . D 4 HOH A 76 476 78 HOH HOH . D 4 HOH A 77 477 79 HOH HOH . D 4 HOH A 78 478 80 HOH HOH . D 4 HOH A 79 479 81 HOH HOH . D 4 HOH A 80 480 82 HOH HOH . D 4 HOH A 81 481 83 HOH HOH . D 4 HOH A 82 482 84 HOH HOH . D 4 HOH A 83 483 85 HOH HOH . D 4 HOH A 84 484 86 HOH HOH . D 4 HOH A 85 485 87 HOH HOH . D 4 HOH A 86 486 88 HOH HOH . D 4 HOH A 87 487 89 HOH HOH . D 4 HOH A 88 488 90 HOH HOH . D 4 HOH A 89 489 91 HOH HOH . D 4 HOH A 90 490 92 HOH HOH . D 4 HOH A 91 491 93 HOH HOH . D 4 HOH A 92 492 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3' AC2 . A . B 2 -49.781 20.094 20.455 0.4 35.17 ? C3' AC2 301 A 1 HETATM 2 C C3' AC2 . B . B 2 -47.647 21.095 22.761 0.4 35.46 ? C3' AC2 301 A 1 HETATM 3 O O3' AC2 . A . B 2 -48.628 20.431 19.662 0.4 32.19 ? O3' AC2 301 A 1 HETATM 4 O O3' AC2 . B . B 2 -46.679 21.176 23.81 0.4 29.1 ? O3' AC2 301 A 1 HETATM 5 C C2' AC2 . A . B 2 -49.678 20.824 21.78 0.4 37.07 ? C2' AC2 301 A 1 HETATM 6 C C2' AC2 . B . B 2 -48.545 19.869 22.937 0.4 38.9 ? C2' AC2 301 A 1 HETATM 7 O O1' AC2 . A . B 2 -49.63 19.872 22.844 0.4 42.66 ? O1' AC2 301 A 1 HETATM 8 O O1' AC2 . B . B 2 -49.901 20.205 22.582 0.4 42.75 ? O1' AC2 301 A 1 HETATM 9 C C1' AC2 . A . B 2 -50.926 19.55 23.364 0.4 43.4 ? C1' AC2 301 A 1 HETATM 10 C C1' AC2 . B . B 2 -50.906 19.53 23.369 0.4 43.66 ? C1' AC2 301 A 1 HETATM 11 N N9 AC2 . . . B 2 -51.157 20.137 24.694 0.8 44.49 ? N9 AC2 301 A 1 HETATM 12 C C8 AC2 . . . B 2 -50.918 19.563 25.903 0.8 45.07 ? C8 AC2 301 A 1 HETATM 13 N N7 AC2 . . . B 2 -51.257 20.385 26.942 0.8 44.73 ? N7 AC2 301 A 1 HETATM 14 C C5 AC2 . . . B 2 -51.741 21.525 26.425 0.8 44.8 ? C5 AC2 301 A 1 HETATM 15 C C6 AC2 . . . B 2 -52.275 22.822 26.954 0.8 46.79 ? C6 AC2 301 A 1 HETATM 16 O O6 AC2 . . . B 2 -52.386 23.119 28.176 0.8 49.59 ? O6 AC2 301 A 1 HETATM 17 N N1 AC2 . . . B 2 -52.66 23.722 26.055 0.8 44.77 ? N1 AC2 301 A 1 HETATM 18 C C2 AC2 . . . B 2 -52.576 23.495 24.742 0.8 42.43 ? C2 AC2 301 A 1 HETATM 19 N N2 AC2 . . . B 2 -52.989 24.481 23.94 0.8 44.29 ? N2 AC2 301 A 1 HETATM 20 N N3 AC2 . . . B 2 -52.099 22.36 24.176 0.8 43.27 ? N3 AC2 301 A 1 HETATM 21 C C4 AC2 . . . B 2 -51.674 21.348 24.95 0.8 44.45 ? C4 AC2 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #