data_4DA8 # _model_server_result.job_id JRzjMmakELK68mr-Rz5S1A _model_server_result.datetime_utc '2024-11-24 14:11:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4da8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4DA8 # _exptl.entry_id 4DA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.137 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-bromoguanosine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DA8 _cell.length_a 135.752 _cell.length_b 135.752 _cell.length_c 57.384 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -67.876 117.564681 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -135.752 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 28.692 5 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -135.752 0 28.692 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -67.876 117.564681 28.692 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 Br N5 O5' _chem_comp.formula_weight 362.137 _chem_comp.id BG2 _chem_comp.mon_nstd_flag . _chem_comp.name 8-bromoguanosine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR C8 BG2 sing 70 n n N1 C2 BG2 sing 71 n n N1 C6 BG2 sing 72 n n C2 N2 BG2 sing 73 n n C2 N3 BG2 doub 74 n n N3 C4 BG2 sing 75 n n C4 C5 BG2 doub 76 n y C4 N9 BG2 sing 77 n y C5 C6 BG2 sing 78 n n C5 N7 BG2 sing 79 n y C6 O6 BG2 doub 80 n n N7 C8 BG2 doub 81 n y C8 N9 BG2 sing 82 n y N9 C1' BG2 sing 83 n n C1' C2' BG2 sing 84 n n C1' O4' BG2 sing 85 n n C2' O2' BG2 sing 86 n n C2' C3' BG2 sing 87 n n C3' O3' BG2 sing 88 n n C3' C4' BG2 sing 89 n n C4' O4' BG2 sing 90 n n C4' C5' BG2 sing 91 n n C5' O5' BG2 sing 92 n n N1 HN1 BG2 sing 93 n n N2 HN2 BG2 sing 94 n n N2 HN2A BG2 sing 95 n n C1' H1' BG2 sing 96 n n C2' H2' BG2 sing 97 n n O2' HO2' BG2 sing 98 n n C3' H3' BG2 sing 99 n n O3' HO3' BG2 sing 100 n n C4' H4' BG2 sing 101 n n C5' H5' BG2 sing 102 n n C5' "H5'A" BG2 sing 103 n n O5' HO5' BG2 sing 104 n n # _atom_sites.entry_id 4DA8 _atom_sites.fract_transf_matrix[1][1] 0.007366 _atom_sites.fract_transf_matrix[1][2] 0.004253 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BG2 A 1 301 1 BG2 BG2 . C 3 HOH A 1 401 2 HOH HOH . C 3 HOH A 2 402 3 HOH HOH . C 3 HOH A 3 403 4 HOH HOH . C 3 HOH A 4 404 5 HOH HOH . C 3 HOH A 5 405 6 HOH HOH . C 3 HOH A 6 406 7 HOH HOH . C 3 HOH A 7 407 8 HOH HOH . C 3 HOH A 8 408 9 HOH HOH . C 3 HOH A 9 409 10 HOH HOH . C 3 HOH A 10 410 11 HOH HOH . C 3 HOH A 11 411 12 HOH HOH . C 3 HOH A 12 412 13 HOH HOH . C 3 HOH A 13 413 14 HOH HOH . C 3 HOH A 14 414 15 HOH HOH . C 3 HOH A 15 415 16 HOH HOH . C 3 HOH A 16 416 17 HOH HOH . C 3 HOH A 17 417 18 HOH HOH . C 3 HOH A 18 418 19 HOH HOH . C 3 HOH A 19 419 20 HOH HOH . C 3 HOH A 20 420 21 HOH HOH . C 3 HOH A 21 421 22 HOH HOH . C 3 HOH A 22 422 23 HOH HOH . C 3 HOH A 23 423 24 HOH HOH . C 3 HOH A 24 424 25 HOH HOH . C 3 HOH A 25 425 26 HOH HOH . C 3 HOH A 26 426 27 HOH HOH . C 3 HOH A 27 427 28 HOH HOH . C 3 HOH A 28 428 29 HOH HOH . C 3 HOH A 29 429 30 HOH HOH . C 3 HOH A 30 430 31 HOH HOH . C 3 HOH A 31 431 32 HOH HOH . C 3 HOH A 32 432 33 HOH HOH . C 3 HOH A 33 433 34 HOH HOH . C 3 HOH A 34 434 35 HOH HOH . C 3 HOH A 35 435 36 HOH HOH . C 3 HOH A 36 436 37 HOH HOH . C 3 HOH A 37 437 38 HOH HOH . C 3 HOH A 38 438 39 HOH HOH . C 3 HOH A 39 439 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BR BR BG2 . . . B 2 -49.272 17.623 24.476 0.8 64.48 ? BR BG2 301 A 1 HETATM 2 N N1 BG2 . . . B 2 -52.832 22.594 26.052 0.8 50.62 ? N1 BG2 301 A 1 HETATM 3 C C2 BG2 . . . B 2 -52.694 22.929 24.751 0.8 47.86 ? C2 BG2 301 A 1 HETATM 4 N N2 BG2 . . . B 2 -53.272 24.041 24.29 0.8 46.96 ? N2 BG2 301 A 1 HETATM 5 N N3 BG2 . . . B 2 -51.997 22.163 23.893 0.8 49.27 ? N3 BG2 301 A 1 HETATM 6 C C4 BG2 . . . B 2 -51.397 21.019 24.313 0.8 50.72 ? C4 BG2 301 A 1 HETATM 7 C C5 BG2 . . . B 2 -51.536 20.664 25.666 0.8 52.03 ? C5 BG2 301 A 1 HETATM 8 C C6 BG2 . . . B 2 -52.253 21.455 26.523 0.8 51.27 ? C6 BG2 301 A 1 HETATM 9 O O6 BG2 . . . B 2 -52.318 21.034 27.82 0.8 50 ? O6 BG2 301 A 1 HETATM 10 N N7 BG2 . . . B 2 -50.885 19.514 25.921 0.8 54.96 ? N7 BG2 301 A 1 HETATM 11 C C8 BG2 . . . B 2 -50.387 19.227 24.725 0.8 54.67 ? C8 BG2 301 A 1 HETATM 12 N N9 BG2 . . . B 2 -50.639 20.063 23.726 0.8 50.42 ? N9 BG2 301 A 1 HETATM 13 C C1' BG2 . . . B 2 -50.145 19.819 22.343 0.8 43.9 ? C1' BG2 301 A 1 HETATM 14 C C2' BG2 . . . B 2 -50.75 20.694 21.289 0.8 39.98 ? C2' BG2 301 A 1 HETATM 15 O O2' BG2 . . . B 2 -51.263 19.871 20.251 0.8 39.15 ? O2' BG2 301 A 1 HETATM 16 C C3' BG2 . . . B 2 -49.596 21.445 20.728 0.8 37.8 ? C3' BG2 301 A 1 HETATM 17 O O3' BG2 . . . B 2 -49.421 20.855 19.472 0.8 36.24 ? O3' BG2 301 A 1 HETATM 18 C C4' BG2 . . . B 2 -48.377 21.118 21.538 0.8 40.86 ? C4' BG2 301 A 1 HETATM 19 O O4' BG2 . . . B 2 -48.743 20.001 22.328 0.8 42.99 ? O4' BG2 301 A 1 HETATM 20 C C5' BG2 . . . B 2 -47.916 22.248 22.461 0.8 42.16 ? C5' BG2 301 A 1 HETATM 21 O O5' BG2 . . . B 2 -47.33 21.697 23.655 0.8 43.13 ? O5' BG2 301 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #