data_4DAE # _model_server_result.job_id LCdh1pqdJ5BUkEZIuARZLA _model_server_result.datetime_utc '2024-10-20 00:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4DAE # _exptl.entry_id 4DAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.686 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-chloro-9-(beta-D-ribofuranosyl)-9H-purin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DAE _cell.length_a 135.352 _cell.length_b 135.352 _cell.length_c 56.801 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -67.676 117.21827 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -135.352 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 28.4005 5 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -135.352 0 28.4005 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -67.676 117.21827 28.4005 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 Cl N5 O4' _chem_comp.formula_weight 301.686 _chem_comp.id 6CR _chem_comp.mon_nstd_flag . _chem_comp.name 6-chloro-9-(beta-D-ribofuranosyl)-9H-purin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 6CR doub 1 n y N1 C6 6CR sing 2 n y N3 C2 6CR sing 3 n y N20 C2 6CR sing 4 n n N3 C4 6CR doub 5 n y N9 C4 6CR sing 6 n y C4 C5 6CR sing 7 n y C5 N7 6CR sing 8 n y C5 C6 6CR doub 9 n y C6 CL1 6CR sing 10 n n C8 N7 6CR doub 11 n y N9 C8 6CR sing 12 n y C8 H8 6CR sing 13 n n C1' N9 6CR sing 14 n n C2' C1' 6CR sing 15 n n C1' O4' 6CR sing 16 n n C1' H1' 6CR sing 17 n n O2' C2' 6CR sing 18 n n C3' C2' 6CR sing 19 n n C2' H2' 6CR sing 20 n n O2' HO2' 6CR sing 21 n n N20 HN20 6CR sing 22 n n N20 HN2A 6CR sing 23 n n O3' C3' 6CR sing 24 n n C3' C4' 6CR sing 25 n n C3' H3' 6CR sing 26 n n O3' HO3' 6CR sing 27 n n C4' O4' 6CR sing 28 n n C4' C5' 6CR sing 29 n n C4' H4' 6CR sing 30 n n C5' O5' 6CR sing 31 n n C5' H5' 6CR sing 32 n n C5' "H5'A" 6CR sing 33 n n O5' HO5' 6CR sing 34 n n # _atom_sites.entry_id 4DAE _atom_sites.fract_transf_matrix[1][1] 0.007388 _atom_sites.fract_transf_matrix[1][2] 0.004266 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6CR A 1 301 1 6CR 6CR . C 3 CL A 1 302 2 CL CL . D 4 ACT A 1 303 3 ACT ACT . E 5 GOL A 1 304 4 GOL GOL . F 5 GOL A 1 305 5 GOL GOL . G 6 HOH A 1 401 6 HOH HOH . G 6 HOH A 2 402 7 HOH HOH . G 6 HOH A 3 403 8 HOH HOH . G 6 HOH A 4 404 9 HOH HOH . G 6 HOH A 5 405 10 HOH HOH . G 6 HOH A 6 406 11 HOH HOH . G 6 HOH A 7 407 12 HOH HOH . G 6 HOH A 8 408 13 HOH HOH . G 6 HOH A 9 409 14 HOH HOH . G 6 HOH A 10 410 15 HOH HOH . G 6 HOH A 11 411 16 HOH HOH . G 6 HOH A 12 412 17 HOH HOH . G 6 HOH A 13 413 18 HOH HOH . G 6 HOH A 14 414 19 HOH HOH . G 6 HOH A 15 415 20 HOH HOH . G 6 HOH A 16 416 21 HOH HOH . G 6 HOH A 17 417 22 HOH HOH . G 6 HOH A 18 418 23 HOH HOH . G 6 HOH A 19 419 24 HOH HOH . G 6 HOH A 20 420 25 HOH HOH . G 6 HOH A 21 421 26 HOH HOH . G 6 HOH A 22 422 27 HOH HOH . G 6 HOH A 23 423 28 HOH HOH . G 6 HOH A 24 424 29 HOH HOH . G 6 HOH A 25 425 30 HOH HOH . G 6 HOH A 26 426 31 HOH HOH . G 6 HOH A 27 427 32 HOH HOH . G 6 HOH A 28 428 33 HOH HOH . G 6 HOH A 29 429 34 HOH HOH . G 6 HOH A 30 430 35 HOH HOH . G 6 HOH A 31 431 36 HOH HOH . G 6 HOH A 32 432 37 HOH HOH . G 6 HOH A 33 433 38 HOH HOH . G 6 HOH A 34 434 39 HOH HOH . G 6 HOH A 35 435 40 HOH HOH . G 6 HOH A 36 436 41 HOH HOH . G 6 HOH A 37 437 42 HOH HOH . G 6 HOH A 38 438 43 HOH HOH . G 6 HOH A 39 439 44 HOH HOH . G 6 HOH A 40 440 45 HOH HOH . G 6 HOH A 41 441 46 HOH HOH . G 6 HOH A 42 442 47 HOH HOH . G 6 HOH A 43 443 48 HOH HOH . G 6 HOH A 44 444 49 HOH HOH . G 6 HOH A 45 445 50 HOH HOH . G 6 HOH A 46 446 51 HOH HOH . G 6 HOH A 47 447 52 HOH HOH . G 6 HOH A 48 448 53 HOH HOH . G 6 HOH A 49 449 54 HOH HOH . G 6 HOH A 50 450 55 HOH HOH . G 6 HOH A 51 451 56 HOH HOH . G 6 HOH A 52 452 57 HOH HOH . G 6 HOH A 53 453 58 HOH HOH . G 6 HOH A 54 454 59 HOH HOH . G 6 HOH A 55 455 60 HOH HOH . G 6 HOH A 56 456 61 HOH HOH . G 6 HOH A 57 457 62 HOH HOH . G 6 HOH A 58 458 63 HOH HOH . G 6 HOH A 59 459 64 HOH HOH . G 6 HOH A 60 460 65 HOH HOH . G 6 HOH A 61 461 66 HOH HOH . G 6 HOH A 62 462 67 HOH HOH . G 6 HOH A 63 463 68 HOH HOH . G 6 HOH A 64 464 69 HOH HOH . G 6 HOH A 65 465 70 HOH HOH . G 6 HOH A 66 466 71 HOH HOH . G 6 HOH A 67 467 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 6CR . . . B 2 -52.276 22.116 25.568 1 38.33 ? N1 6CR 301 A 1 HETATM 2 C C2 6CR . . . B 2 -52.067 22.506 24.304 1 36.43 ? C2 6CR 301 A 1 HETATM 3 N N3 6CR . . . B 2 -51.434 21.694 23.405 1 35.94 ? N3 6CR 301 A 1 HETATM 4 C C4 6CR . . . B 2 -50.976 20.462 23.744 1 35.17 ? C4 6CR 301 A 1 HETATM 5 C C5 6CR . . . B 2 -51.198 19.993 25.119 1 37.65 ? C5 6CR 301 A 1 HETATM 6 C C6 6CR . . . B 2 -51.887 20.913 26.027 1 39.38 ? C6 6CR 301 A 1 HETATM 7 N N7 6CR . . . B 2 -50.693 18.764 25.214 1 36.57 ? N7 6CR 301 A 1 HETATM 8 C C8 6CR . . . B 2 -50.176 18.448 23.998 1 35.09 ? C8 6CR 301 A 1 HETATM 9 N N9 6CR . . . B 2 -50.369 19.452 23.12 1 32.97 ? N9 6CR 301 A 1 HETATM 10 C C1' 6CR . . . B 2 -49.876 19.413 21.749 1 29.94 ? C1' 6CR 301 A 1 HETATM 11 CL CL1 6CR . . . B 2 -52.156 20.471 27.747 1 49.79 ? CL1 6CR 301 A 1 HETATM 12 C C2' 6CR . . . B 2 -50.424 20.52 20.861 1 28.49 ? C2' 6CR 301 A 1 HETATM 13 O O2' 6CR . . . B 2 -51.147 19.972 19.756 1 27.76 ? O2' 6CR 301 A 1 HETATM 14 N N20 6CR . . . B 2 -52.508 23.737 23.969 1 31.79 ? N20 6CR 301 A 1 HETATM 15 C C3' 6CR . . . B 2 -49.214 21.282 20.376 1 28.46 ? C3' 6CR 301 A 1 HETATM 16 O O3' 6CR . . . B 2 -48.789 20.627 19.175 1 31.37 ? O3' 6CR 301 A 1 HETATM 17 C C4' 6CR . . . B 2 -48.12 21.003 21.398 1 30.75 ? C4' 6CR 301 A 1 HETATM 18 O O4' 6CR . . . B 2 -48.53 19.802 22.068 1 29.63 ? O4' 6CR 301 A 1 HETATM 19 C C5' 6CR . . . B 2 -47.928 22.138 22.404 1 28.77 ? C5' 6CR 301 A 1 HETATM 20 O O5' 6CR . . . B 2 -46.904 21.785 23.336 1 29.26 ? O5' 6CR 301 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #