data_4DAF # _model_server_result.job_id M8WDSUTKl-oELJGHSrSnpQ _model_server_result.datetime_utc '2024-11-23 22:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4daf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4DAF # _exptl.entry_id 4DAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.199 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DAF _cell.length_a 98.371 _cell.length_b 98.371 _cell.length_c 263.131 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1,2 B,H,I,J,K,L,N 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -49.1855 85.191785 0 3 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -98.371 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C9 H9 N5 O4' _chem_comp.formula_weight 251.199 _chem_comp.id 0J4 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C1 0J4 sing 1 n n N1 C1 0J4 sing 2 n n N1 C4 0J4 sing 3 n n C1 N2 0J4 doub 4 n n O1 C4 0J4 doub 5 n n C4 C3 0J4 sing 6 n n N2 C2 0J4 sing 7 n n C3 C2 0J4 doub 8 n n C3 C6 0J4 sing 9 n n C2 N3 0J4 sing 10 n n C6 O2 0J4 doub 11 n n C6 C5 0J4 sing 12 n n N3 N4 0J4 sing 13 n n N4 C5 0J4 doub 14 n n C5 C7 0J4 sing 15 n n C10 C7 0J4 sing 16 n n C7 C8 0J4 sing 17 n n O3 C8 0J4 doub 18 n n C8 O4 0J4 sing 19 n n N5 H1 0J4 sing 20 n n N5 H2 0J4 sing 21 n n C7 H5 0J4 sing 22 n n C10 H6 0J4 sing 23 n n C10 H7 0J4 sing 24 n n C10 H8 0J4 sing 25 n n O4 H9 0J4 sing 26 n n N1 H4 0J4 sing 27 n n N3 H3 0J4 sing 28 n n # _atom_sites.entry_id 4DAF _atom_sites.fract_transf_matrix[1][1] 0.010166 _atom_sites.fract_transf_matrix[1][2] 0.005869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0J4 A 1 301 1 0J4 0J4 . D 3 SO4 A 1 302 1 SO4 SO4 . E 3 SO4 A 1 303 2 SO4 SO4 . F 3 SO4 A 1 304 3 SO4 SO4 . G 3 SO4 A 1 305 4 SO4 SO4 . H 2 0J4 B 1 301 1 0J4 0J4 . I 3 SO4 B 1 302 5 SO4 SO4 . J 3 SO4 B 1 303 6 SO4 SO4 . K 3 SO4 B 1 304 7 SO4 SO4 . L 3 SO4 B 1 305 8 SO4 SO4 . M 4 HOH A 1 401 2 HOH HOH . M 4 HOH A 2 402 4 HOH HOH . M 4 HOH A 3 403 6 HOH HOH . M 4 HOH A 4 404 8 HOH HOH . M 4 HOH A 5 405 9 HOH HOH . M 4 HOH A 6 406 11 HOH HOH . M 4 HOH A 7 407 12 HOH HOH . M 4 HOH A 8 408 13 HOH HOH . M 4 HOH A 9 409 14 HOH HOH . M 4 HOH A 10 410 15 HOH HOH . M 4 HOH A 11 411 16 HOH HOH . M 4 HOH A 12 412 17 HOH HOH . M 4 HOH A 13 413 18 HOH HOH . M 4 HOH A 14 414 19 HOH HOH . M 4 HOH A 15 415 26 HOH HOH . M 4 HOH A 16 416 27 HOH HOH . N 4 HOH B 1 401 1 HOH HOH . N 4 HOH B 2 402 3 HOH HOH . N 4 HOH B 3 403 5 HOH HOH . N 4 HOH B 4 404 7 HOH HOH . N 4 HOH B 5 405 10 HOH HOH . N 4 HOH B 6 406 20 HOH HOH . N 4 HOH B 7 407 21 HOH HOH . N 4 HOH B 8 408 22 HOH HOH . N 4 HOH B 9 409 23 HOH HOH . N 4 HOH B 10 410 24 HOH HOH . N 4 HOH B 11 411 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 0J4 . . . H 2 -31.235 -1.321 50.97 1 95.35 ? O1 0J4 301 B 1 HETATM 2 C C4 0J4 . . . H 2 -30.182 -0.409 50.733 1 98.41 ? C4 0J4 301 B 1 HETATM 3 N N1 0J4 . . . H 2 -29.962 0.594 51.602 1 98.91 ? N1 0J4 301 B 1 HETATM 4 C C1 0J4 . . . H 2 -28.949 1.446 51.452 1 99.41 ? C1 0J4 301 B 1 HETATM 5 N N5 0J4 . . . H 2 -28.731 2.476 52.413 1 98.75 ? N5 0J4 301 B 1 HETATM 6 N N2 0J4 . . . H 2 -28.119 1.329 50.406 1 100.5 ? N2 0J4 301 B 1 HETATM 7 C C2 0J4 . . . H 2 -28.274 0.358 49.486 1 103.11 ? C2 0J4 301 B 1 HETATM 8 C C3 0J4 . . . H 2 -29.323 -0.547 49.631 1 101.14 ? C3 0J4 301 B 1 HETATM 9 C C6 0J4 . . . H 2 -29.444 -1.556 48.626 1 102.67 ? C6 0J4 301 B 1 HETATM 10 O O2 0J4 . . . H 2 -30.479 -2.483 48.691 1 102.94 ? O2 0J4 301 B 1 HETATM 11 N N3 0J4 . . . H 2 -27.435 0.272 48.47 1 104.56 ? N3 0J4 301 B 1 HETATM 12 N N4 0J4 . . . H 2 -27.54 -0.667 47.542 1 104.88 ? N4 0J4 301 B 1 HETATM 13 C C5 0J4 . . . H 2 -28.505 -1.578 47.585 1 104.93 ? C5 0J4 301 B 1 HETATM 14 C C7 0J4 . . . H 2 -28.602 -2.595 46.44 1 108.59 ? C7 0J4 301 B 1 HETATM 15 C C10 0J4 . . . H 2 -28.516 -4.018 46.966 1 108.13 ? C10 0J4 301 B 1 HETATM 16 C C8 0J4 . . . H 2 -29.854 -2.54 45.631 1 112.5 ? C8 0J4 301 B 1 HETATM 17 O O4 0J4 . . . H 2 -30.725 -3.429 45.763 1 115.25 ? O4 0J4 301 B 1 HETATM 18 O O3 0J4 . . . H 2 -30.154 -1.51 45.031 1 114.67 ? O3 0J4 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #