data_4DAJ
#
_model_server_result.job_id            GpZ6zfLlVR7nw0ZsoUuQZw 
_model_server_result.datetime_utc      '2024-12-01 08:55:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4daj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2000}' 
#
_entry.id    4DAJ 
#
_exptl.entry_id    4DAJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              392.512 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.87 
_cell.angle_beta          89.9 
_cell.angle_gamma         84.9 
_cell.entry_id            4DAJ 
_cell.length_a            54.77 
_cell.length_b            61.31 
_cell.length_c            176.91 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DAJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I 1 1 
B,J,K 2 1 
C,L,M,N 3 1 
D,O,P,Q,R 4 1 
A,B,E,F,G,H,I,J,K 5 1 
C,D,L,M,N,O,P,Q,R 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 J N N 
? 2 L N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 85 A CYS 140 1_555 A SG CYS 165 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 400 A CYS 516 1_555 A SG CYS 403 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 B SG CYS 85 B CYS 140 1_555 B SG CYS 165 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 B SG CYS 400 B CYS 516 1_555 B SG CYS 403 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf5 C SG CYS 85 C CYS 140 1_555 C SG CYS 165 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 C SG CYS 400 C CYS 516 1_555 C SG CYS 403 C CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 D SG CYS 85 D CYS 140 1_555 D SG CYS 165 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 D SG CYS 400 D CYS 516 1_555 D SG CYS 403 D CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C19 H22 N O4 S2 1' 
_chem_comp.formula_weight    392.512 
_chem_comp.id                0HK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Tiotropium 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S44 C43 0HK sing 1 n y 
S44 C32 0HK sing 2 n y 
C43 C42 0HK doub 3 n y 
C6 C7 0HK sing 4 n n 
C6 C5 0HK sing 5 n n 
O29 C28 0HK doub 6 n n 
C7 C8 0HK sing 7 n n 
C7 N2 0HK sing 8 n n 
C42 C41 0HK sing 9 n y 
C32 C41 0HK doub 10 n y 
C32 C30 0HK sing 11 n n 
O33 C30 0HK sing 12 n n 
C8 O10 0HK sing 13 n n 
C8 C9 0HK sing 14 n n 
C28 C30 0HK sing 15 n n 
C28 O11 0HK sing 16 n n 
C30 C31 0HK sing 17 n n 
C12 N2 0HK sing 18 n n 
C1 N2 0HK sing 19 n n 
N2 C3 0HK sing 20 n n 
O10 C9 0HK sing 21 n n 
C5 O11 0HK sing 22 n n 
C5 C4 0HK sing 23 n n 
C9 C3 0HK sing 24 n n 
C3 C4 0HK sing 25 n n 
C31 S37 0HK sing 26 n y 
C31 C34 0HK doub 27 n y 
S37 C36 0HK sing 28 n y 
C34 C35 0HK sing 29 n y 
C35 C36 0HK doub 30 n y 
C34 H1 0HK sing 31 n n 
C35 H2 0HK sing 32 n n 
C36 H3 0HK sing 33 n n 
C41 H4 0HK sing 34 n n 
C42 H5 0HK sing 35 n n 
C43 H6 0HK sing 36 n n 
O33 H7 0HK sing 37 n n 
C1 H8 0HK sing 38 n n 
C1 H9 0HK sing 39 n n 
C1 H10 0HK sing 40 n n 
C3 H11 0HK sing 41 n n 
C4 H12 0HK sing 42 n n 
C4 H13 0HK sing 43 n n 
C5 H14 0HK sing 44 n n 
C6 H15 0HK sing 45 n n 
C6 H16 0HK sing 46 n n 
C7 H17 0HK sing 47 n n 
C8 H18 0HK sing 48 n n 
C9 H19 0HK sing 49 n n 
C12 H20 0HK sing 50 n n 
C12 H21 0HK sing 51 n n 
C12 H22 0HK sing 52 n n 
#
_atom_sites.entry_id                     4DAJ 
_atom_sites.fract_transf_matrix[1][1]    0.018258 
_atom_sites.fract_transf_matrix[1][2]    -0.001629 
_atom_sites.fract_transf_matrix[1][3]    0.000086 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016375 
_atom_sites.fract_transf_matrix[2][3]    -0.001185 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 0HK A 1 2000 2000 0HK 0HK . 
F 3 PO4 A 1 2001 1 PO4 PO4 . 
G 3 PO4 A 1 2002 5 PO4 PO4 . 
H 3 PO4 A 1 2003 6 PO4 PO4 . 
I 3 PO4 A 1 2004 7 PO4 PO4 . 
J 2 0HK B 1 2000 2000 0HK 0HK . 
K 3 PO4 B 1 2001 8 PO4 PO4 . 
L 2 0HK C 1 2000 2000 0HK 0HK . 
M 3 PO4 C 1 2001 9 PO4 PO4 . 
N 3 PO4 C 1 2002 10 PO4 PO4 . 
O 2 0HK D 1 2000 2000 0HK 0HK . 
P 3 PO4 D 1 2001 2 PO4 PO4 . 
Q 3 PO4 D 1 2002 3 PO4 PO4 . 
R 3 PO4 D 1 2003 4 PO4 PO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C28 0HK . . . J 2 -32.12 12.102 -48.019 1 66.05 ? C28 0HK 2000 B 1 
HETATM 2 O O29 0HK . . . J 2 -33.203 11.546 -47.846 1 60.7 ? O29 0HK 2000 B 1 
HETATM 3 C C31 0HK . . . J 2 -30.522 11.143 -49.641 1 65.74 ? C31 0HK 2000 B 1 
HETATM 4 C C32 0HK . . . J 2 -29.687 11.949 -47.489 1 63.54 ? C32 0HK 2000 B 1 
HETATM 5 C C34 0HK . . . J 2 -31.208 11.653 -50.713 1 66.59 ? C34 0HK 2000 B 1 
HETATM 6 C C35 0HK . . . J 2 -30.727 11.422 -51.969 1 66.94 ? C35 0HK 2000 B 1 
HETATM 7 C C36 0HK . . . J 2 -29.568 10.702 -52.139 1 56.51 ? C36 0HK 2000 B 1 
HETATM 8 C C41 0HK . . . J 2 -28.848 12.924 -47.972 1 65.48 ? C41 0HK 2000 B 1 
HETATM 9 C C42 0HK . . . J 2 -27.837 13.388 -47.194 1 67.57 ? C42 0HK 2000 B 1 
HETATM 10 C C43 0HK . . . J 2 -27.667 12.856 -45.942 1 69.04 ? C43 0HK 2000 B 1 
HETATM 11 O O10 0HK . . . J 2 -30.019 16.474 -49.554 1 63.24 ? O10 0HK 2000 B 1 
HETATM 12 O O11 0HK . . . J 2 -32.13 13.403 -48.551 1 73.73 ? O11 0HK 2000 B 1 
HETATM 13 O O33 0HK . . . J 2 -31.097 10.062 -47.589 1 64.34 ? O33 0HK 2000 B 1 
HETATM 14 S S37 0HK . . . J 2 -29.144 10.341 -50.434 1 58.28 ? S37 0HK 2000 B 1 
HETATM 15 S S44 0HK . . . J 2 -29.003 11.657 -45.869 1 77.88 ? S44 0HK 2000 B 1 
HETATM 16 C C1 0HK . . . J 2 -33.309 17.622 -47.37 1 68.36 ? C1 0HK 2000 B 1 
HETATM 17 C C3 0HK . . . J 2 -32.525 16.408 -49.266 1 70.37 ? C3 0HK 2000 B 1 
HETATM 18 C C4 0HK . . . J 2 -33.485 15.281 -49.023 1 71.42 ? C4 0HK 2000 B 1 
HETATM 19 C C5 0HK . . . J 2 -32.939 14.375 -47.939 1 74.68 ? C5 0HK 2000 B 1 
HETATM 20 C C6 0HK . . . J 2 -32.099 15.054 -46.869 1 74.03 ? C6 0HK 2000 B 1 
HETATM 21 C C7 0HK . . . J 2 -31.378 16.235 -47.443 1 72.74 ? C7 0HK 2000 B 1 
HETATM 22 C C8 0HK . . . J 2 -30.438 15.679 -48.475 1 68.22 ? C8 0HK 2000 B 1 
HETATM 23 C C9 0HK . . . J 2 -31.235 15.786 -49.729 1 65.52 ? C9 0HK 2000 B 1 
HETATM 24 C C12 0HK . . . J 2 -31.419 18.324 -48.487 1 69.43 ? C12 0HK 2000 B 1 
HETATM 25 C C30 0HK . . . J 2 -30.851 11.286 -48.18 1 62.53 ? C30 0HK 2000 B 1 
HETATM 26 N N2 0HK . . . J 2 -32.185 17.146 -48.127 1 68.96 ? N2 0HK 2000 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#