data_4DAN # _model_server_result.job_id ioACMk4rkPy5_jPhyyM1Sg _model_server_result.datetime_utc '2024-11-07 16:49:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dan # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4DAN # _exptl.entry_id 4DAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.232 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DAN _cell.length_a 135.804 _cell.length_b 135.804 _cell.length_c 55.154 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 135.804 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 67.902 117.609714 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H12 F N5 O4' _chem_comp.formula_weight 285.232 _chem_comp.id 2FA _chem_comp.mon_nstd_flag . _chem_comp.name 2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-FLUOROADENOSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' 2FA sing 1 n n O5' H5' 2FA sing 2 n n C5' C4' 2FA sing 3 n n C5' "H5'1" 2FA sing 4 n n C5' "H5'2" 2FA sing 5 n n C4' O4' 2FA sing 6 n n C4' C3' 2FA sing 7 n n C4' H4' 2FA sing 8 n n O4' C1' 2FA sing 9 n n C1' N9 2FA sing 10 n n C1' C2' 2FA sing 11 n n C1' H1' 2FA sing 12 n n N9 C4 2FA sing 13 n y N9 C8 2FA sing 14 n y C4 N3 2FA doub 15 n y C4 C5 2FA sing 16 n y N3 C2 2FA sing 17 n y C2 F 2FA sing 18 n n C2 N1 2FA doub 19 n y N1 C6 2FA sing 20 n y C6 N6 2FA sing 21 n n C6 C5 2FA doub 22 n y N6 HN61 2FA sing 23 n n N6 HN62 2FA sing 24 n n C5 N7 2FA sing 25 n y N7 C8 2FA doub 26 n y C8 H8 2FA sing 27 n n C2' O2' 2FA sing 28 n n C2' C3' 2FA sing 29 n n C2' H2' 2FA sing 30 n n O2' H1 2FA sing 31 n n C3' O3' 2FA sing 32 n n C3' H3' 2FA sing 33 n n O3' H2 2FA sing 34 n n # _atom_sites.entry_id 4DAN _atom_sites.fract_transf_matrix[1][1] 0.007364 _atom_sites.fract_transf_matrix[1][2] 0.004251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2FA A 1 301 1 2FA 2FA . D 2 2FA B 1 301 2 2FA 2FA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' 2FA . . . D 2 46.256 22.625 4.093 1 29.55 ? O5' 2FA 301 B 1 HETATM 2 C C5' 2FA . . . D 2 47.231 22.804 5.12 1 28.19 ? C5' 2FA 301 B 1 HETATM 3 C C4' 2FA . . . D 2 47.3 21.564 6.01 1 27.37 ? C4' 2FA 301 B 1 HETATM 4 O O4' 2FA . . . D 2 47.725 20.406 5.302 1 25.48 ? O4' 2FA 301 B 1 HETATM 5 C C1' 2FA . . . D 2 49.093 20.096 5.564 1 26.54 ? C1' 2FA 301 B 1 HETATM 6 N N9 2FA . . . D 2 49.697 20.255 4.213 1 26.93 ? N9 2FA 301 B 1 HETATM 7 C C4 2FA . . . D 2 50.445 21.235 3.684 1 26.91 ? C4 2FA 301 B 1 HETATM 8 N N3 2FA . . . D 2 50.976 22.376 4.16 1 27.27 ? N3 2FA 301 B 1 HETATM 9 C C2 2FA . . . D 2 51.729 23.188 3.382 1 29.39 ? C2 2FA 301 B 1 HETATM 10 F F 2FA . . . D 2 52.261 24.332 3.861 1 31.66 ? F 2FA 301 B 1 HETATM 11 N N1 2FA . . . D 2 51.957 22.876 2.096 1 30.5 ? N1 2FA 301 B 1 HETATM 12 C C6 2FA . . . D 2 51.449 21.746 1.576 1 30.25 ? C6 2FA 301 B 1 HETATM 13 N N6 2FA . . . D 2 51.694 21.442 0.283 1 32.03 ? N6 2FA 301 B 1 HETATM 14 C C5 2FA . . . D 2 50.688 20.906 2.365 1 28.31 ? C5 2FA 301 B 1 HETATM 15 N N7 2FA . . . D 2 50.081 19.739 2.108 1 28.32 ? N7 2FA 301 B 1 HETATM 16 C C8 2FA . . . D 2 49.466 19.351 3.246 1 27.6 ? C8 2FA 301 B 1 HETATM 17 C C2' 2FA . . . D 2 49.521 21.014 6.703 1 26.64 ? C2' 2FA 301 B 1 HETATM 18 O O2' 2FA . . . D 2 50.007 20.282 7.824 1 27.41 ? O2' 2FA 301 B 1 HETATM 19 C C3' 2FA . . . D 2 48.291 21.777 7.129 1 26.75 ? C3' 2FA 301 B 1 HETATM 20 O O3' 2FA . . . D 2 47.728 21.318 8.359 1 26.5 ? O3' 2FA 301 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #