data_4DAN
#
_model_server_result.job_id            yojdlsg76-MgSg6DuxW3SA 
_model_server_result.datetime_utc      '2024-11-28 04:12:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dan 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4DAN 
#
_exptl.entry_id    4DAN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              285.232 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DAN 
_cell.length_a            135.804 
_cell.length_b            135.804 
_cell.length_c            55.154 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DAN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 135.804 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 67.902 117.609714 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H12 F N5 O4' 
_chem_comp.formula_weight    285.232 
_chem_comp.id                2FA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-FLUOROADENOSINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' 2FA sing 1 n n 
O5' H5' 2FA sing 2 n n 
C5' C4' 2FA sing 3 n n 
C5' "H5'1" 2FA sing 4 n n 
C5' "H5'2" 2FA sing 5 n n 
C4' O4' 2FA sing 6 n n 
C4' C3' 2FA sing 7 n n 
C4' H4' 2FA sing 8 n n 
O4' C1' 2FA sing 9 n n 
C1' N9 2FA sing 10 n n 
C1' C2' 2FA sing 11 n n 
C1' H1' 2FA sing 12 n n 
N9 C4 2FA sing 13 n y 
N9 C8 2FA sing 14 n y 
C4 N3 2FA doub 15 n y 
C4 C5 2FA sing 16 n y 
N3 C2 2FA sing 17 n y 
C2 F 2FA sing 18 n n 
C2 N1 2FA doub 19 n y 
N1 C6 2FA sing 20 n y 
C6 N6 2FA sing 21 n n 
C6 C5 2FA doub 22 n y 
N6 HN61 2FA sing 23 n n 
N6 HN62 2FA sing 24 n n 
C5 N7 2FA sing 25 n y 
N7 C8 2FA doub 26 n y 
C8 H8 2FA sing 27 n n 
C2' O2' 2FA sing 28 n n 
C2' C3' 2FA sing 29 n n 
C2' H2' 2FA sing 30 n n 
O2' H1 2FA sing 31 n n 
C3' O3' 2FA sing 32 n n 
C3' H3' 2FA sing 33 n n 
O3' H2 2FA sing 34 n n 
#
_atom_sites.entry_id                     4DAN 
_atom_sites.fract_transf_matrix[1][1]    0.007364 
_atom_sites.fract_transf_matrix[1][2]    0.004251 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008503 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2FA A 1 301 1 2FA 2FA . 
D 2 2FA B 1 301 2 2FA 2FA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' 2FA . . . D 2 46.256 22.625 4.093 1 29.55 ? O5' 2FA 301 B 1 
HETATM 2 C C5' 2FA . . . D 2 47.231 22.804 5.12 1 28.19 ? C5' 2FA 301 B 1 
HETATM 3 C C4' 2FA . . . D 2 47.3 21.564 6.01 1 27.37 ? C4' 2FA 301 B 1 
HETATM 4 O O4' 2FA . . . D 2 47.725 20.406 5.302 1 25.48 ? O4' 2FA 301 B 1 
HETATM 5 C C1' 2FA . . . D 2 49.093 20.096 5.564 1 26.54 ? C1' 2FA 301 B 1 
HETATM 6 N N9 2FA . . . D 2 49.697 20.255 4.213 1 26.93 ? N9 2FA 301 B 1 
HETATM 7 C C4 2FA . . . D 2 50.445 21.235 3.684 1 26.91 ? C4 2FA 301 B 1 
HETATM 8 N N3 2FA . . . D 2 50.976 22.376 4.16 1 27.27 ? N3 2FA 301 B 1 
HETATM 9 C C2 2FA . . . D 2 51.729 23.188 3.382 1 29.39 ? C2 2FA 301 B 1 
HETATM 10 F F 2FA . . . D 2 52.261 24.332 3.861 1 31.66 ? F 2FA 301 B 1 
HETATM 11 N N1 2FA . . . D 2 51.957 22.876 2.096 1 30.5 ? N1 2FA 301 B 1 
HETATM 12 C C6 2FA . . . D 2 51.449 21.746 1.576 1 30.25 ? C6 2FA 301 B 1 
HETATM 13 N N6 2FA . . . D 2 51.694 21.442 0.283 1 32.03 ? N6 2FA 301 B 1 
HETATM 14 C C5 2FA . . . D 2 50.688 20.906 2.365 1 28.31 ? C5 2FA 301 B 1 
HETATM 15 N N7 2FA . . . D 2 50.081 19.739 2.108 1 28.32 ? N7 2FA 301 B 1 
HETATM 16 C C8 2FA . . . D 2 49.466 19.351 3.246 1 27.6 ? C8 2FA 301 B 1 
HETATM 17 C C2' 2FA . . . D 2 49.521 21.014 6.703 1 26.64 ? C2' 2FA 301 B 1 
HETATM 18 O O2' 2FA . . . D 2 50.007 20.282 7.824 1 27.41 ? O2' 2FA 301 B 1 
HETATM 19 C C3' 2FA . . . D 2 48.291 21.777 7.129 1 26.75 ? C3' 2FA 301 B 1 
HETATM 20 O O3' 2FA . . . D 2 47.728 21.318 8.359 1 26.5 ? O3' 2FA 301 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#