data_4DAO # _model_server_result.job_id ScVDjUb51KrdHjnB-lL0kg _model_server_result.datetime_utc '2024-11-07 19:14:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4DAO # _exptl.entry_id 4DAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DAO _cell.length_a 136.458 _cell.length_b 136.458 _cell.length_c 55.484 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -136.458 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -68.229 -118.176095 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 145 n n C1 C2 GOL sing 146 n n C1 H11 GOL sing 147 n n C1 H12 GOL sing 148 n n O1 HO1 GOL sing 149 n n C2 O2 GOL sing 150 n n C2 C3 GOL sing 151 n n C2 H2 GOL sing 152 n n O2 HO2 GOL sing 153 n n C3 O3 GOL sing 154 n n C3 H31 GOL sing 155 n n C3 H32 GOL sing 156 n n O3 HO3 GOL sing 157 n n # _atom_sites.entry_id 4DAO _atom_sites.fract_transf_matrix[1][1] 0.007328 _atom_sites.fract_transf_matrix[1][2] 0.004231 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADE A 1 301 2 ADE ADE . D 2 ADE B 1 301 1 ADE ADE . E 3 GOL B 1 302 3 GOL GOL . F 4 HOH A 1 401 4 HOH HOH . F 4 HOH A 2 402 6 HOH HOH . F 4 HOH A 3 403 7 HOH HOH . F 4 HOH A 4 404 10 HOH HOH . F 4 HOH A 5 405 12 HOH HOH . F 4 HOH A 6 406 14 HOH HOH . F 4 HOH A 7 407 17 HOH HOH . F 4 HOH A 8 408 18 HOH HOH . F 4 HOH A 9 409 24 HOH HOH . F 4 HOH A 10 410 26 HOH HOH . F 4 HOH A 11 411 27 HOH HOH . F 4 HOH A 12 412 29 HOH HOH . F 4 HOH A 13 413 30 HOH HOH . F 4 HOH A 14 414 32 HOH HOH . F 4 HOH A 15 415 33 HOH HOH . F 4 HOH A 16 416 34 HOH HOH . F 4 HOH A 17 417 35 HOH HOH . F 4 HOH A 18 418 36 HOH HOH . F 4 HOH A 19 419 38 HOH HOH . F 4 HOH A 20 420 41 HOH HOH . F 4 HOH A 21 421 42 HOH HOH . F 4 HOH A 22 422 44 HOH HOH . F 4 HOH A 23 423 46 HOH HOH . F 4 HOH A 24 424 47 HOH HOH . F 4 HOH A 25 425 48 HOH HOH . F 4 HOH A 26 426 51 HOH HOH . G 4 HOH B 1 401 5 HOH HOH . G 4 HOH B 2 402 8 HOH HOH . G 4 HOH B 3 403 9 HOH HOH . G 4 HOH B 4 404 11 HOH HOH . G 4 HOH B 5 405 13 HOH HOH . G 4 HOH B 6 406 15 HOH HOH . G 4 HOH B 7 407 16 HOH HOH . G 4 HOH B 8 408 19 HOH HOH . G 4 HOH B 9 409 20 HOH HOH . G 4 HOH B 10 410 21 HOH HOH . G 4 HOH B 11 411 22 HOH HOH . G 4 HOH B 12 412 23 HOH HOH . G 4 HOH B 13 413 25 HOH HOH . G 4 HOH B 14 414 28 HOH HOH . G 4 HOH B 15 415 31 HOH HOH . G 4 HOH B 16 416 37 HOH HOH . G 4 HOH B 17 417 39 HOH HOH . G 4 HOH B 18 418 40 HOH HOH . G 4 HOH B 19 419 43 HOH HOH . G 4 HOH B 20 420 45 HOH HOH . G 4 HOH B 21 421 49 HOH HOH . G 4 HOH B 22 422 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -38.601 -32.442 -8.964 1 57.87 ? C1 GOL 302 B 1 HETATM 2 O O1 GOL . . . E 3 -39.708 -32.85 -8.189 1 58.7 ? O1 GOL 302 B 1 HETATM 3 C C2 GOL . . . E 3 -38.052 -31.125 -8.433 1 58.47 ? C2 GOL 302 B 1 HETATM 4 O O2 GOL . . . E 3 -38.982 -30.105 -8.719 1 56.75 ? O2 GOL 302 B 1 HETATM 5 C C3 GOL . . . E 3 -36.706 -30.836 -9.103 1 57.35 ? C3 GOL 302 B 1 HETATM 6 O O3 GOL . . . E 3 -35.867 -30.129 -8.222 1 57.13 ? O3 GOL 302 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 6 #