data_4DB1
#
_model_server_result.job_id            4gdnxlo_n_gA6JaAgBIhpQ 
_model_server_result.datetime_utc      '2025-03-13 21:31:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4db1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":802}' 
#
_entry.id    4DB1 
#
_exptl.entry_id    4DB1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.29 
_cell.angle_gamma         90 
_cell.entry_id            4DB1 
_cell.length_a            100.206 
_cell.length_b            94.31 
_cell.length_c            110.894 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DB1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 185 A THR 185 1_555 D MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc2 A OG SER 242 A SER 242 1_555 D MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc3 C O3G ANP . A ANP 801 1_555 D MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
metalc ? metalc4 C O2B ANP . A ANP 801 1_555 D MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc5 D MN MN . A MN 802 1_555 G O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc6 D MN MN . A MN 802 1_555 G O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc7 B OG1 THR 185 B THR 185 1_555 F MN MN . B MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc8 B OG SER 242 B SER 242 1_555 F MN MN . B MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc9 E O3G ANP . B ANP 801 1_555 F MN MN . B MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? 
metalc ? metalc10 E O2B ANP . B ANP 801 1_555 F MN MN . B MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc11 F MN MN . B MN 802 1_555 H O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc12 F MN MN . B MN 802 1_555 H O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4DB1 
_atom_sites.fract_transf_matrix[1][1]    0.009979 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004091 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009746 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP A 1 801 998 ANP ANP . 
D 3 MN A 1 802 901 MN MN . 
E 2 ANP B 1 801 999 ANP ANP . 
F 3 MN B 1 802 902 MN MN . 
G 4 HOH A 1 901 1 HOH HOH . 
G 4 HOH A 2 902 2 HOH HOH . 
G 4 HOH A 3 903 5 HOH HOH . 
G 4 HOH A 4 904 6 HOH HOH . 
G 4 HOH A 5 905 7 HOH HOH . 
G 4 HOH A 6 906 8 HOH HOH . 
G 4 HOH A 7 907 9 HOH HOH . 
G 4 HOH A 8 908 10 HOH HOH . 
G 4 HOH A 9 909 11 HOH HOH . 
G 4 HOH A 10 910 12 HOH HOH . 
G 4 HOH A 11 911 13 HOH HOH . 
G 4 HOH A 12 912 14 HOH HOH . 
G 4 HOH A 13 913 15 HOH HOH . 
G 4 HOH A 14 914 16 HOH HOH . 
G 4 HOH A 15 915 31 HOH HOH . 
G 4 HOH A 16 916 33 HOH HOH . 
G 4 HOH A 17 917 34 HOH HOH . 
G 4 HOH A 18 918 36 HOH HOH . 
G 4 HOH A 19 919 38 HOH HOH . 
G 4 HOH A 20 920 41 HOH HOH . 
G 4 HOH A 21 921 42 HOH HOH . 
G 4 HOH A 22 922 45 HOH HOH . 
G 4 HOH A 23 923 58 HOH HOH . 
G 4 HOH A 24 924 62 HOH HOH . 
G 4 HOH A 25 925 63 HOH HOH . 
G 4 HOH A 26 926 66 HOH HOH . 
G 4 HOH A 27 927 67 HOH HOH . 
G 4 HOH A 28 928 75 HOH HOH . 
G 4 HOH A 29 929 76 HOH HOH . 
G 4 HOH A 30 930 77 HOH HOH . 
G 4 HOH A 31 931 78 HOH HOH . 
G 4 HOH A 32 932 79 HOH HOH . 
G 4 HOH A 33 933 80 HOH HOH . 
G 4 HOH A 34 934 81 HOH HOH . 
G 4 HOH A 35 935 89 HOH HOH . 
G 4 HOH A 36 936 92 HOH HOH . 
G 4 HOH A 37 937 93 HOH HOH . 
G 4 HOH A 38 938 95 HOH HOH . 
G 4 HOH A 39 939 96 HOH HOH . 
G 4 HOH A 40 940 99 HOH HOH . 
G 4 HOH A 41 941 100 HOH HOH . 
G 4 HOH A 42 942 101 HOH HOH . 
G 4 HOH A 43 943 102 HOH HOH . 
G 4 HOH A 44 944 105 HOH HOH . 
G 4 HOH A 45 945 107 HOH HOH . 
G 4 HOH A 46 946 110 HOH HOH . 
G 4 HOH A 47 947 111 HOH HOH . 
G 4 HOH A 48 948 112 HOH HOH . 
G 4 HOH A 49 949 116 HOH HOH . 
G 4 HOH A 50 950 117 HOH HOH . 
G 4 HOH A 51 951 118 HOH HOH . 
G 4 HOH A 52 952 120 HOH HOH . 
G 4 HOH A 53 953 121 HOH HOH . 
G 4 HOH A 54 954 123 HOH HOH . 
G 4 HOH A 55 955 124 HOH HOH . 
G 4 HOH A 56 956 125 HOH HOH . 
G 4 HOH A 57 957 126 HOH HOH . 
G 4 HOH A 58 958 128 HOH HOH . 
G 4 HOH A 59 959 133 HOH HOH . 
G 4 HOH A 60 960 135 HOH HOH . 
G 4 HOH A 61 961 136 HOH HOH . 
G 4 HOH A 62 962 140 HOH HOH . 
G 4 HOH A 63 963 145 HOH HOH . 
G 4 HOH A 64 964 147 HOH HOH . 
G 4 HOH A 65 965 149 HOH HOH . 
G 4 HOH A 66 966 151 HOH HOH . 
G 4 HOH A 67 967 152 HOH HOH . 
G 4 HOH A 68 968 155 HOH HOH . 
G 4 HOH A 69 969 162 HOH HOH . 
G 4 HOH A 70 970 163 HOH HOH . 
G 4 HOH A 71 971 165 HOH HOH . 
G 4 HOH A 72 972 168 HOH HOH . 
G 4 HOH A 73 973 169 HOH HOH . 
G 4 HOH A 74 974 173 HOH HOH . 
G 4 HOH A 75 975 176 HOH HOH . 
G 4 HOH A 76 976 177 HOH HOH . 
G 4 HOH A 77 977 183 HOH HOH . 
G 4 HOH A 78 978 186 HOH HOH . 
G 4 HOH A 79 979 189 HOH HOH . 
G 4 HOH A 80 980 191 HOH HOH . 
G 4 HOH A 81 981 193 HOH HOH . 
G 4 HOH A 82 982 195 HOH HOH . 
G 4 HOH A 83 983 196 HOH HOH . 
G 4 HOH A 84 984 199 HOH HOH . 
G 4 HOH A 85 985 202 HOH HOH . 
H 4 HOH B 1 901 3 HOH HOH . 
H 4 HOH B 2 902 4 HOH HOH . 
H 4 HOH B 3 903 17 HOH HOH . 
H 4 HOH B 4 904 18 HOH HOH . 
H 4 HOH B 5 905 19 HOH HOH . 
H 4 HOH B 6 906 20 HOH HOH . 
H 4 HOH B 7 907 21 HOH HOH . 
H 4 HOH B 8 908 22 HOH HOH . 
H 4 HOH B 9 909 23 HOH HOH . 
H 4 HOH B 10 910 24 HOH HOH . 
H 4 HOH B 11 911 25 HOH HOH . 
H 4 HOH B 12 912 26 HOH HOH . 
H 4 HOH B 13 913 27 HOH HOH . 
H 4 HOH B 14 914 28 HOH HOH . 
H 4 HOH B 15 915 29 HOH HOH . 
H 4 HOH B 16 916 30 HOH HOH . 
H 4 HOH B 17 917 32 HOH HOH . 
H 4 HOH B 18 918 35 HOH HOH . 
H 4 HOH B 19 919 37 HOH HOH . 
H 4 HOH B 20 920 39 HOH HOH . 
H 4 HOH B 21 921 40 HOH HOH . 
H 4 HOH B 22 922 43 HOH HOH . 
H 4 HOH B 23 923 44 HOH HOH . 
H 4 HOH B 24 924 46 HOH HOH . 
H 4 HOH B 25 925 47 HOH HOH . 
H 4 HOH B 26 926 48 HOH HOH . 
H 4 HOH B 27 927 49 HOH HOH . 
H 4 HOH B 28 928 50 HOH HOH . 
H 4 HOH B 29 929 51 HOH HOH . 
H 4 HOH B 30 930 52 HOH HOH . 
H 4 HOH B 31 931 53 HOH HOH . 
H 4 HOH B 32 932 54 HOH HOH . 
H 4 HOH B 33 933 55 HOH HOH . 
H 4 HOH B 34 934 56 HOH HOH . 
H 4 HOH B 35 935 57 HOH HOH . 
H 4 HOH B 36 936 59 HOH HOH . 
H 4 HOH B 37 937 60 HOH HOH . 
H 4 HOH B 38 938 61 HOH HOH . 
H 4 HOH B 39 939 64 HOH HOH . 
H 4 HOH B 40 940 65 HOH HOH . 
H 4 HOH B 41 941 68 HOH HOH . 
H 4 HOH B 42 942 69 HOH HOH . 
H 4 HOH B 43 943 70 HOH HOH . 
H 4 HOH B 44 944 71 HOH HOH . 
H 4 HOH B 45 945 72 HOH HOH . 
H 4 HOH B 46 946 73 HOH HOH . 
H 4 HOH B 47 947 74 HOH HOH . 
H 4 HOH B 48 948 82 HOH HOH . 
H 4 HOH B 49 949 83 HOH HOH . 
H 4 HOH B 50 950 84 HOH HOH . 
H 4 HOH B 51 951 85 HOH HOH . 
H 4 HOH B 52 952 86 HOH HOH . 
H 4 HOH B 53 953 87 HOH HOH . 
H 4 HOH B 54 954 88 HOH HOH . 
H 4 HOH B 55 955 90 HOH HOH . 
H 4 HOH B 56 956 91 HOH HOH . 
H 4 HOH B 57 957 94 HOH HOH . 
H 4 HOH B 58 958 97 HOH HOH . 
H 4 HOH B 59 959 98 HOH HOH . 
H 4 HOH B 60 960 103 HOH HOH . 
H 4 HOH B 61 961 104 HOH HOH . 
H 4 HOH B 62 962 106 HOH HOH . 
H 4 HOH B 63 963 108 HOH HOH . 
H 4 HOH B 64 964 109 HOH HOH . 
H 4 HOH B 65 965 113 HOH HOH . 
H 4 HOH B 66 966 114 HOH HOH . 
H 4 HOH B 67 967 115 HOH HOH . 
H 4 HOH B 68 968 119 HOH HOH . 
H 4 HOH B 69 969 122 HOH HOH . 
H 4 HOH B 70 970 127 HOH HOH . 
H 4 HOH B 71 971 129 HOH HOH . 
H 4 HOH B 72 972 130 HOH HOH . 
H 4 HOH B 73 973 131 HOH HOH . 
H 4 HOH B 74 974 132 HOH HOH . 
H 4 HOH B 75 975 134 HOH HOH . 
H 4 HOH B 76 976 137 HOH HOH . 
H 4 HOH B 77 977 138 HOH HOH . 
H 4 HOH B 78 978 139 HOH HOH . 
H 4 HOH B 79 979 141 HOH HOH . 
H 4 HOH B 80 980 142 HOH HOH . 
H 4 HOH B 81 981 143 HOH HOH . 
H 4 HOH B 82 982 144 HOH HOH . 
H 4 HOH B 83 983 146 HOH HOH . 
H 4 HOH B 84 984 148 HOH HOH . 
H 4 HOH B 85 985 150 HOH HOH . 
H 4 HOH B 86 986 153 HOH HOH . 
H 4 HOH B 87 987 154 HOH HOH . 
H 4 HOH B 88 988 156 HOH HOH . 
H 4 HOH B 89 989 157 HOH HOH . 
H 4 HOH B 90 990 158 HOH HOH . 
H 4 HOH B 91 991 159 HOH HOH . 
H 4 HOH B 92 992 160 HOH HOH . 
H 4 HOH B 93 993 161 HOH HOH . 
H 4 HOH B 94 994 164 HOH HOH . 
H 4 HOH B 95 995 166 HOH HOH . 
H 4 HOH B 96 996 167 HOH HOH . 
H 4 HOH B 97 997 170 HOH HOH . 
H 4 HOH B 98 998 171 HOH HOH . 
H 4 HOH B 99 999 172 HOH HOH . 
H 4 HOH B 100 1000 174 HOH HOH . 
H 4 HOH B 101 1001 175 HOH HOH . 
H 4 HOH B 102 1002 178 HOH HOH . 
H 4 HOH B 103 1003 179 HOH HOH . 
H 4 HOH B 104 1004 180 HOH HOH . 
H 4 HOH B 105 1005 181 HOH HOH . 
H 4 HOH B 106 1006 182 HOH HOH . 
H 4 HOH B 107 1007 184 HOH HOH . 
H 4 HOH B 108 1008 185 HOH HOH . 
H 4 HOH B 109 1009 187 HOH HOH . 
H 4 HOH B 110 1010 188 HOH HOH . 
H 4 HOH B 111 1011 190 HOH HOH . 
H 4 HOH B 112 1012 192 HOH HOH . 
H 4 HOH B 113 1013 194 HOH HOH . 
H 4 HOH B 114 1014 197 HOH HOH . 
H 4 HOH B 115 1015 198 HOH HOH . 
H 4 HOH B 116 1016 200 HOH HOH . 
H 4 HOH B 117 1017 201 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               40.476 
_atom_site.Cartn_y               43.46 
_atom_site.Cartn_z               56.503 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        17.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           802 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           467 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#