data_4DB8 # _model_server_result.job_id hneva2nwuKGHRJjb_WIm1w _model_server_result.datetime_utc '2024-11-05 00:38:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4db8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4DB8 # _exptl.entry_id 4DB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.83 _cell.angle_gamma 90 _cell.entry_id 4DB8 _cell.length_a 58.002 _cell.length_b 113.643 _cell.length_c 85.592 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H,I,L 1 1 B,C,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DB8 _atom_sites.fract_transf_matrix[1][1] 0.017241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005215 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 301 1 MG MG . F 2 MG B 1 301 2 MG MG . G 2 MG B 1 302 3 MG MG . H 2 MG D 1 301 4 MG MG . I 3 HOH A 1 401 1 HOH HOH . I 3 HOH A 2 402 9 HOH HOH . I 3 HOH A 3 403 10 HOH HOH . I 3 HOH A 4 404 15 HOH HOH . I 3 HOH A 5 405 24 HOH HOH . I 3 HOH A 6 406 30 HOH HOH . I 3 HOH A 7 407 34 HOH HOH . I 3 HOH A 8 408 39 HOH HOH . I 3 HOH A 9 409 59 HOH HOH . I 3 HOH A 10 410 80 HOH HOH . I 3 HOH A 11 411 81 HOH HOH . I 3 HOH A 12 412 84 HOH HOH . I 3 HOH A 13 413 85 HOH HOH . I 3 HOH A 14 414 88 HOH HOH . I 3 HOH A 15 415 89 HOH HOH . I 3 HOH A 16 416 95 HOH HOH . I 3 HOH A 17 417 100 HOH HOH . I 3 HOH A 18 418 101 HOH HOH . I 3 HOH A 19 419 102 HOH HOH . I 3 HOH A 20 420 104 HOH HOH . I 3 HOH A 21 421 109 HOH HOH . I 3 HOH A 22 422 110 HOH HOH . I 3 HOH A 23 423 116 HOH HOH . I 3 HOH A 24 424 122 HOH HOH . I 3 HOH A 25 425 125 HOH HOH . I 3 HOH A 26 426 126 HOH HOH . I 3 HOH A 27 427 127 HOH HOH . I 3 HOH A 28 428 132 HOH HOH . J 3 HOH B 1 401 2 HOH HOH . J 3 HOH B 2 402 6 HOH HOH . J 3 HOH B 3 403 13 HOH HOH . J 3 HOH B 4 404 18 HOH HOH . J 3 HOH B 5 405 22 HOH HOH . J 3 HOH B 6 406 26 HOH HOH . J 3 HOH B 7 407 27 HOH HOH . J 3 HOH B 8 408 28 HOH HOH . J 3 HOH B 9 409 32 HOH HOH . J 3 HOH B 10 410 44 HOH HOH . J 3 HOH B 11 411 49 HOH HOH . J 3 HOH B 12 412 50 HOH HOH . J 3 HOH B 13 413 53 HOH HOH . J 3 HOH B 14 414 56 HOH HOH . J 3 HOH B 15 415 64 HOH HOH . J 3 HOH B 16 416 65 HOH HOH . J 3 HOH B 17 417 68 HOH HOH . J 3 HOH B 18 418 71 HOH HOH . J 3 HOH B 19 419 78 HOH HOH . J 3 HOH B 20 420 82 HOH HOH . J 3 HOH B 21 421 92 HOH HOH . J 3 HOH B 22 422 103 HOH HOH . J 3 HOH B 23 423 115 HOH HOH . J 3 HOH B 24 424 129 HOH HOH . J 3 HOH B 25 425 130 HOH HOH . K 3 HOH C 1 301 4 HOH HOH . K 3 HOH C 2 302 7 HOH HOH . K 3 HOH C 3 303 11 HOH HOH . K 3 HOH C 4 304 12 HOH HOH . K 3 HOH C 5 305 20 HOH HOH . K 3 HOH C 6 306 21 HOH HOH . K 3 HOH C 7 307 29 HOH HOH . K 3 HOH C 8 308 31 HOH HOH . K 3 HOH C 9 309 36 HOH HOH . K 3 HOH C 10 310 40 HOH HOH . K 3 HOH C 11 311 43 HOH HOH . K 3 HOH C 12 312 46 HOH HOH . K 3 HOH C 13 313 54 HOH HOH . K 3 HOH C 14 314 57 HOH HOH . K 3 HOH C 15 315 58 HOH HOH . K 3 HOH C 16 316 62 HOH HOH . K 3 HOH C 17 317 63 HOH HOH . K 3 HOH C 18 318 66 HOH HOH . K 3 HOH C 19 319 69 HOH HOH . K 3 HOH C 20 320 70 HOH HOH . K 3 HOH C 21 321 73 HOH HOH . K 3 HOH C 22 322 74 HOH HOH . K 3 HOH C 23 323 75 HOH HOH . K 3 HOH C 24 324 79 HOH HOH . K 3 HOH C 25 325 91 HOH HOH . K 3 HOH C 26 326 94 HOH HOH . K 3 HOH C 27 327 96 HOH HOH . K 3 HOH C 28 328 105 HOH HOH . K 3 HOH C 29 329 107 HOH HOH . K 3 HOH C 30 330 117 HOH HOH . K 3 HOH C 31 331 118 HOH HOH . K 3 HOH C 32 332 120 HOH HOH . K 3 HOH C 33 333 124 HOH HOH . K 3 HOH C 34 334 128 HOH HOH . K 3 HOH C 35 335 133 HOH HOH . L 3 HOH D 1 401 3 HOH HOH . L 3 HOH D 2 402 5 HOH HOH . L 3 HOH D 3 403 8 HOH HOH . L 3 HOH D 4 404 14 HOH HOH . L 3 HOH D 5 405 16 HOH HOH . L 3 HOH D 6 406 17 HOH HOH . L 3 HOH D 7 407 19 HOH HOH . L 3 HOH D 8 408 23 HOH HOH . L 3 HOH D 9 409 25 HOH HOH . L 3 HOH D 10 410 33 HOH HOH . L 3 HOH D 11 411 35 HOH HOH . L 3 HOH D 12 412 37 HOH HOH . L 3 HOH D 13 413 38 HOH HOH . L 3 HOH D 14 414 41 HOH HOH . L 3 HOH D 15 415 42 HOH HOH . L 3 HOH D 16 416 45 HOH HOH . L 3 HOH D 17 417 47 HOH HOH . L 3 HOH D 18 418 48 HOH HOH . L 3 HOH D 19 419 51 HOH HOH . L 3 HOH D 20 420 52 HOH HOH . L 3 HOH D 21 421 55 HOH HOH . L 3 HOH D 22 422 60 HOH HOH . L 3 HOH D 23 423 61 HOH HOH . L 3 HOH D 24 424 67 HOH HOH . L 3 HOH D 25 425 72 HOH HOH . L 3 HOH D 26 426 76 HOH HOH . L 3 HOH D 27 427 77 HOH HOH . L 3 HOH D 28 428 83 HOH HOH . L 3 HOH D 29 429 86 HOH HOH . L 3 HOH D 30 430 87 HOH HOH . L 3 HOH D 31 431 90 HOH HOH . L 3 HOH D 32 432 93 HOH HOH . L 3 HOH D 33 433 97 HOH HOH . L 3 HOH D 34 434 98 HOH HOH . L 3 HOH D 35 435 99 HOH HOH . L 3 HOH D 36 436 106 HOH HOH . L 3 HOH D 37 437 108 HOH HOH . L 3 HOH D 38 438 111 HOH HOH . L 3 HOH D 39 439 112 HOH HOH . L 3 HOH D 40 440 113 HOH HOH . L 3 HOH D 41 441 114 HOH HOH . L 3 HOH D 42 442 119 HOH HOH . L 3 HOH D 43 443 121 HOH HOH . L 3 HOH D 44 444 123 HOH HOH . L 3 HOH D 45 445 131 HOH HOH . L 3 HOH D 46 446 134 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x -81.719 _atom_site.Cartn_y -67.692 _atom_site.Cartn_z 38.211 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #