data_4DBB # _model_server_result.job_id nEES0yK8RclQ2WwhrqsCoQ _model_server_result.datetime_utc '2024-10-28 02:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":707}' # _entry.id 4DBB # _exptl.entry_id 4DBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DBB _cell.length_a 64.729 _cell.length_b 64.729 _cell.length_c 115.155 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 136 n n C1 C2 GOL sing 137 n n C1 H11 GOL sing 138 n n C1 H12 GOL sing 139 n n O1 HO1 GOL sing 140 n n C2 O2 GOL sing 141 n n C2 C3 GOL sing 142 n n C2 H2 GOL sing 143 n n O2 HO2 GOL sing 144 n n C3 O3 GOL sing 145 n n C3 H31 GOL sing 146 n n C3 H32 GOL sing 147 n n O3 HO3 GOL sing 148 n n # _atom_sites.entry_id 4DBB _atom_sites.fract_transf_matrix[1][1] 0.015449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 701 1 CL CL . C 3 ACY A 1 702 1 ACY ACY . D 3 ACY A 1 703 2 ACY ACY . E 4 IPA A 1 704 1 IPA IPA . F 4 IPA A 1 705 2 IPA IPA . G 5 GOL A 1 706 1 GOL GOL . H 5 GOL A 1 707 2 GOL GOL . I 6 HOH A 1 801 1 HOH HOH . I 6 HOH A 2 802 2 HOH HOH . I 6 HOH A 3 803 3 HOH HOH . I 6 HOH A 4 804 4 HOH HOH . I 6 HOH A 5 805 5 HOH HOH . I 6 HOH A 6 806 6 HOH HOH . I 6 HOH A 7 807 7 HOH HOH . I 6 HOH A 8 808 8 HOH HOH . I 6 HOH A 9 809 9 HOH HOH . I 6 HOH A 10 810 10 HOH HOH . I 6 HOH A 11 811 11 HOH HOH . I 6 HOH A 12 812 12 HOH HOH . I 6 HOH A 13 813 13 HOH HOH . I 6 HOH A 14 814 14 HOH HOH . I 6 HOH A 15 815 15 HOH HOH . I 6 HOH A 16 816 16 HOH HOH . I 6 HOH A 17 817 17 HOH HOH . I 6 HOH A 18 818 18 HOH HOH . I 6 HOH A 19 819 19 HOH HOH . I 6 HOH A 20 820 20 HOH HOH . I 6 HOH A 21 821 21 HOH HOH . I 6 HOH A 22 822 22 HOH HOH . I 6 HOH A 23 823 23 HOH HOH . I 6 HOH A 24 824 24 HOH HOH . I 6 HOH A 25 825 25 HOH HOH . I 6 HOH A 26 826 26 HOH HOH . I 6 HOH A 27 827 27 HOH HOH . I 6 HOH A 28 828 28 HOH HOH . I 6 HOH A 29 829 29 HOH HOH . I 6 HOH A 30 830 30 HOH HOH . I 6 HOH A 31 831 31 HOH HOH . I 6 HOH A 32 832 32 HOH HOH . I 6 HOH A 33 833 33 HOH HOH . I 6 HOH A 34 834 34 HOH HOH . I 6 HOH A 35 835 35 HOH HOH . I 6 HOH A 36 836 36 HOH HOH . I 6 HOH A 37 837 37 HOH HOH . I 6 HOH A 38 838 38 HOH HOH . I 6 HOH A 39 839 39 HOH HOH . I 6 HOH A 40 840 40 HOH HOH . I 6 HOH A 41 841 41 HOH HOH . I 6 HOH A 42 842 42 HOH HOH . I 6 HOH A 43 843 43 HOH HOH . I 6 HOH A 44 844 44 HOH HOH . I 6 HOH A 45 845 45 HOH HOH . I 6 HOH A 46 846 46 HOH HOH . I 6 HOH A 47 847 47 HOH HOH . I 6 HOH A 48 848 48 HOH HOH . I 6 HOH A 49 849 49 HOH HOH . I 6 HOH A 50 850 50 HOH HOH . I 6 HOH A 51 851 51 HOH HOH . I 6 HOH A 52 852 52 HOH HOH . I 6 HOH A 53 853 53 HOH HOH . I 6 HOH A 54 854 54 HOH HOH . I 6 HOH A 55 855 55 HOH HOH . I 6 HOH A 56 856 56 HOH HOH . I 6 HOH A 57 857 57 HOH HOH . I 6 HOH A 58 858 58 HOH HOH . I 6 HOH A 59 859 59 HOH HOH . I 6 HOH A 60 860 60 HOH HOH . I 6 HOH A 61 861 61 HOH HOH . I 6 HOH A 62 862 62 HOH HOH . I 6 HOH A 63 863 63 HOH HOH . I 6 HOH A 64 864 64 HOH HOH . I 6 HOH A 65 865 65 HOH HOH . I 6 HOH A 66 866 66 HOH HOH . I 6 HOH A 67 867 67 HOH HOH . I 6 HOH A 68 868 68 HOH HOH . I 6 HOH A 69 869 69 HOH HOH . I 6 HOH A 70 870 70 HOH HOH . I 6 HOH A 71 871 71 HOH HOH . I 6 HOH A 72 872 72 HOH HOH . I 6 HOH A 73 873 73 HOH HOH . I 6 HOH A 74 874 74 HOH HOH . I 6 HOH A 75 875 75 HOH HOH . I 6 HOH A 76 876 76 HOH HOH . I 6 HOH A 77 877 77 HOH HOH . I 6 HOH A 78 878 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 11.795 3.693 25.573 1 59.26 ? C1 GOL 707 A 1 HETATM 2 O O1 GOL . . . H 5 12.798 4.64 25.224 1 66 ? O1 GOL 707 A 1 HETATM 3 C C2 GOL . . . H 5 10.443 4.013 24.92 1 51.41 ? C2 GOL 707 A 1 HETATM 4 O O2 GOL . . . H 5 9.53 4.51 25.883 1 69.27 ? O2 GOL 707 A 1 HETATM 5 C C3 GOL . . . H 5 9.777 2.78 24.294 1 59.67 ? C3 GOL 707 A 1 HETATM 6 O O3 GOL . . . H 5 8.457 3.139 23.882 1 69.99 ? O3 GOL 707 A 1 HETATM 7 H H11 GOL . . . H 5 11.677 3.677 26.656 1 70.93 ? H11 GOL 707 A 1 HETATM 8 H H12 GOL . . . H 5 12.117 2.699 25.261 1 70.93 ? H12 GOL 707 A 1 HETATM 9 H HO1 GOL . . . H 5 13.624 4.436 25.712 1 79.01 ? HO1 GOL 707 A 1 HETATM 10 H H2 GOL . . . H 5 10.599 4.759 24.141 1 61.51 ? H2 GOL 707 A 1 HETATM 11 H HO2 GOL . . . H 5 8.684 4.739 25.444 1 82.94 ? HO2 GOL 707 A 1 HETATM 12 H H31 GOL . . . H 5 9.733 1.97 25.021 1 71.41 ? H31 GOL 707 A 1 HETATM 13 H H32 GOL . . . H 5 10.356 2.44 23.435 1 71.41 ? H32 GOL 707 A 1 HETATM 14 H HO3 GOL . . . H 5 7.878 2.349 23.916 1 83.8 ? HO3 GOL 707 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #