data_4DBF # _model_server_result.job_id 6f1BEhCKCxpmZkJxt0g4Zw _model_server_result.datetime_utc '2024-10-19 04:43:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4DBF # _exptl.entry_id 4DBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DBF _cell.length_a 124.12 _cell.length_b 124.12 _cell.length_c 73.64 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 30 A ASP 10 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc2 A OE1 GLU 136 A GLU 116 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 A OE2 GLU 138 A GLU 118 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 A OD2 ASP 167 A ASP 147 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 C MG MG . A MG 401 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc6 C MG MG . A MG 401 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc7 C MG MG . A MG 401 1_555 F O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc8 D MG MG . A MG 402 1_555 F O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc9 D MG MG . A MG 402 1_555 F O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc10 D MG MG . A MG 402 1_555 F O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc11 D MG MG . A MG 402 1_555 F O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 D MG MG . A MG 402 1_555 F O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc13 B OE1 GLU 136 B GLU 116 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc14 B OE2 GLU 138 B GLU 118 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc15 B OD2 ASP 167 B ASP 147 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc16 E MG MG . B MG 401 1_555 G O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc17 E MG MG . B MG 401 1_555 G O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc18 E MG MG . B MG 401 1_555 G O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DBF _atom_sites.fract_transf_matrix[1][1] 0.008057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 401 MG MG . D 2 MG A 1 402 1 MG MG . E 2 MG B 1 401 401 MG MG . F 3 HOH A 1 501 301 HOH HOH . F 3 HOH A 2 502 302 HOH HOH . F 3 HOH A 3 503 303 HOH HOH . F 3 HOH A 4 504 304 HOH HOH . F 3 HOH A 5 505 305 HOH HOH . F 3 HOH A 6 506 306 HOH HOH . F 3 HOH A 7 507 307 HOH HOH . F 3 HOH A 8 508 1 HOH HOH . F 3 HOH A 9 509 2 HOH HOH . F 3 HOH A 10 510 3 HOH HOH . F 3 HOH A 11 511 4 HOH HOH . F 3 HOH A 12 512 5 HOH HOH . F 3 HOH A 13 513 6 HOH HOH . F 3 HOH A 14 514 7 HOH HOH . F 3 HOH A 15 515 8 HOH HOH . F 3 HOH A 16 516 9 HOH HOH . F 3 HOH A 17 517 10 HOH HOH . F 3 HOH A 18 518 11 HOH HOH . F 3 HOH A 19 519 13 HOH HOH . F 3 HOH A 20 520 16 HOH HOH . F 3 HOH A 21 521 18 HOH HOH . F 3 HOH A 22 522 19 HOH HOH . F 3 HOH A 23 523 21 HOH HOH . F 3 HOH A 24 524 24 HOH HOH . F 3 HOH A 25 525 26 HOH HOH . F 3 HOH A 26 526 27 HOH HOH . F 3 HOH A 27 527 28 HOH HOH . F 3 HOH A 28 528 30 HOH HOH . F 3 HOH A 29 529 31 HOH HOH . F 3 HOH A 30 530 32 HOH HOH . F 3 HOH A 31 531 33 HOH HOH . F 3 HOH A 32 532 34 HOH HOH . F 3 HOH A 33 533 36 HOH HOH . F 3 HOH A 34 534 38 HOH HOH . F 3 HOH A 35 535 40 HOH HOH . F 3 HOH A 36 536 43 HOH HOH . F 3 HOH A 37 537 44 HOH HOH . F 3 HOH A 38 538 45 HOH HOH . F 3 HOH A 39 539 46 HOH HOH . F 3 HOH A 40 540 47 HOH HOH . F 3 HOH A 41 541 49 HOH HOH . F 3 HOH A 42 542 50 HOH HOH . F 3 HOH A 43 543 51 HOH HOH . F 3 HOH A 44 544 52 HOH HOH . F 3 HOH A 45 545 54 HOH HOH . F 3 HOH A 46 546 62 HOH HOH . F 3 HOH A 47 547 64 HOH HOH . F 3 HOH A 48 548 66 HOH HOH . F 3 HOH A 49 549 67 HOH HOH . F 3 HOH A 50 550 69 HOH HOH . F 3 HOH A 51 551 70 HOH HOH . F 3 HOH A 52 552 74 HOH HOH . F 3 HOH A 53 553 78 HOH HOH . F 3 HOH A 54 554 79 HOH HOH . F 3 HOH A 55 555 80 HOH HOH . F 3 HOH A 56 556 83 HOH HOH . F 3 HOH A 57 557 84 HOH HOH . F 3 HOH A 58 558 87 HOH HOH . F 3 HOH A 59 559 88 HOH HOH . F 3 HOH A 60 560 91 HOH HOH . F 3 HOH A 61 561 92 HOH HOH . F 3 HOH A 62 562 94 HOH HOH . F 3 HOH A 63 563 96 HOH HOH . F 3 HOH A 64 564 97 HOH HOH . F 3 HOH A 65 565 98 HOH HOH . F 3 HOH A 66 566 105 HOH HOH . F 3 HOH A 67 567 106 HOH HOH . F 3 HOH A 68 568 108 HOH HOH . F 3 HOH A 69 569 113 HOH HOH . F 3 HOH A 70 570 114 HOH HOH . F 3 HOH A 71 571 117 HOH HOH . F 3 HOH A 72 572 119 HOH HOH . F 3 HOH A 73 573 120 HOH HOH . F 3 HOH A 74 574 122 HOH HOH . F 3 HOH A 75 575 123 HOH HOH . F 3 HOH A 76 576 124 HOH HOH . F 3 HOH A 77 577 125 HOH HOH . F 3 HOH A 78 578 126 HOH HOH . F 3 HOH A 79 579 127 HOH HOH . F 3 HOH A 80 580 128 HOH HOH . F 3 HOH A 81 581 138 HOH HOH . F 3 HOH A 82 582 139 HOH HOH . F 3 HOH A 83 583 141 HOH HOH . F 3 HOH A 84 584 143 HOH HOH . F 3 HOH A 85 585 144 HOH HOH . F 3 HOH A 86 586 145 HOH HOH . F 3 HOH A 87 587 146 HOH HOH . F 3 HOH A 88 588 148 HOH HOH . F 3 HOH A 89 589 149 HOH HOH . F 3 HOH A 90 590 151 HOH HOH . F 3 HOH A 91 591 152 HOH HOH . F 3 HOH A 92 592 164 HOH HOH . F 3 HOH A 93 593 165 HOH HOH . F 3 HOH A 94 594 166 HOH HOH . F 3 HOH A 95 595 167 HOH HOH . F 3 HOH A 96 596 168 HOH HOH . F 3 HOH A 97 597 169 HOH HOH . F 3 HOH A 98 598 170 HOH HOH . F 3 HOH A 99 599 171 HOH HOH . F 3 HOH A 100 600 172 HOH HOH . F 3 HOH A 101 601 173 HOH HOH . F 3 HOH A 102 602 174 HOH HOH . F 3 HOH A 103 603 175 HOH HOH . F 3 HOH A 104 604 176 HOH HOH . F 3 HOH A 105 605 177 HOH HOH . F 3 HOH A 106 606 178 HOH HOH . F 3 HOH A 107 607 179 HOH HOH . F 3 HOH A 108 608 180 HOH HOH . F 3 HOH A 109 609 181 HOH HOH . F 3 HOH A 110 610 182 HOH HOH . F 3 HOH A 111 611 183 HOH HOH . F 3 HOH A 112 612 184 HOH HOH . F 3 HOH A 113 613 186 HOH HOH . F 3 HOH A 114 614 187 HOH HOH . F 3 HOH A 115 615 188 HOH HOH . F 3 HOH A 116 616 189 HOH HOH . F 3 HOH A 117 617 190 HOH HOH . F 3 HOH A 118 618 191 HOH HOH . F 3 HOH A 119 619 192 HOH HOH . F 3 HOH A 120 620 193 HOH HOH . F 3 HOH A 121 621 194 HOH HOH . F 3 HOH A 122 622 199 HOH HOH . F 3 HOH A 123 623 200 HOH HOH . F 3 HOH A 124 624 201 HOH HOH . F 3 HOH A 125 625 202 HOH HOH . F 3 HOH A 126 626 205 HOH HOH . F 3 HOH A 127 627 206 HOH HOH . F 3 HOH A 128 628 208 HOH HOH . G 3 HOH B 1 501 301 HOH HOH . G 3 HOH B 2 502 302 HOH HOH . G 3 HOH B 3 503 303 HOH HOH . G 3 HOH B 4 504 304 HOH HOH . G 3 HOH B 5 505 305 HOH HOH . G 3 HOH B 6 506 306 HOH HOH . G 3 HOH B 7 507 307 HOH HOH . G 3 HOH B 8 508 12 HOH HOH . G 3 HOH B 9 509 14 HOH HOH . G 3 HOH B 10 510 15 HOH HOH . G 3 HOH B 11 511 17 HOH HOH . G 3 HOH B 12 512 20 HOH HOH . G 3 HOH B 13 513 22 HOH HOH . G 3 HOH B 14 514 23 HOH HOH . G 3 HOH B 15 515 25 HOH HOH . G 3 HOH B 16 516 29 HOH HOH . G 3 HOH B 17 517 35 HOH HOH . G 3 HOH B 18 518 37 HOH HOH . G 3 HOH B 19 519 39 HOH HOH . G 3 HOH B 20 520 41 HOH HOH . G 3 HOH B 21 521 42 HOH HOH . G 3 HOH B 22 522 48 HOH HOH . G 3 HOH B 23 523 53 HOH HOH . G 3 HOH B 24 524 55 HOH HOH . G 3 HOH B 25 525 56 HOH HOH . G 3 HOH B 26 526 57 HOH HOH . G 3 HOH B 27 527 58 HOH HOH . G 3 HOH B 28 528 59 HOH HOH . G 3 HOH B 29 529 60 HOH HOH . G 3 HOH B 30 530 61 HOH HOH . G 3 HOH B 31 531 63 HOH HOH . G 3 HOH B 32 532 65 HOH HOH . G 3 HOH B 33 533 68 HOH HOH . G 3 HOH B 34 534 71 HOH HOH . G 3 HOH B 35 535 72 HOH HOH . G 3 HOH B 36 536 73 HOH HOH . G 3 HOH B 37 537 75 HOH HOH . G 3 HOH B 38 538 76 HOH HOH . G 3 HOH B 39 539 77 HOH HOH . G 3 HOH B 40 540 81 HOH HOH . G 3 HOH B 41 541 82 HOH HOH . G 3 HOH B 42 542 85 HOH HOH . G 3 HOH B 43 543 86 HOH HOH . G 3 HOH B 44 544 89 HOH HOH . G 3 HOH B 45 545 90 HOH HOH . G 3 HOH B 46 546 93 HOH HOH . G 3 HOH B 47 547 95 HOH HOH . G 3 HOH B 48 548 99 HOH HOH . G 3 HOH B 49 549 100 HOH HOH . G 3 HOH B 50 550 101 HOH HOH . G 3 HOH B 51 551 102 HOH HOH . G 3 HOH B 52 552 103 HOH HOH . G 3 HOH B 53 553 104 HOH HOH . G 3 HOH B 54 554 107 HOH HOH . G 3 HOH B 55 555 109 HOH HOH . G 3 HOH B 56 556 110 HOH HOH . G 3 HOH B 57 557 111 HOH HOH . G 3 HOH B 58 558 112 HOH HOH . G 3 HOH B 59 559 115 HOH HOH . G 3 HOH B 60 560 116 HOH HOH . G 3 HOH B 61 561 118 HOH HOH . G 3 HOH B 62 562 121 HOH HOH . G 3 HOH B 63 563 129 HOH HOH . G 3 HOH B 64 564 130 HOH HOH . G 3 HOH B 65 565 131 HOH HOH . G 3 HOH B 66 566 132 HOH HOH . G 3 HOH B 67 567 133 HOH HOH . G 3 HOH B 68 568 134 HOH HOH . G 3 HOH B 69 569 135 HOH HOH . G 3 HOH B 70 570 136 HOH HOH . G 3 HOH B 71 571 137 HOH HOH . G 3 HOH B 72 572 140 HOH HOH . G 3 HOH B 73 573 142 HOH HOH . G 3 HOH B 74 574 147 HOH HOH . G 3 HOH B 75 575 150 HOH HOH . G 3 HOH B 76 576 153 HOH HOH . G 3 HOH B 77 577 154 HOH HOH . G 3 HOH B 78 578 155 HOH HOH . G 3 HOH B 79 579 156 HOH HOH . G 3 HOH B 80 580 157 HOH HOH . G 3 HOH B 81 581 158 HOH HOH . G 3 HOH B 82 582 159 HOH HOH . G 3 HOH B 83 583 160 HOH HOH . G 3 HOH B 84 584 161 HOH HOH . G 3 HOH B 85 585 162 HOH HOH . G 3 HOH B 86 586 163 HOH HOH . G 3 HOH B 87 587 185 HOH HOH . G 3 HOH B 88 588 195 HOH HOH . G 3 HOH B 89 589 196 HOH HOH . G 3 HOH B 90 590 197 HOH HOH . G 3 HOH B 91 591 198 HOH HOH . G 3 HOH B 92 592 203 HOH HOH . G 3 HOH B 93 593 204 HOH HOH . G 3 HOH B 94 594 207 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -63.872 _atom_site.Cartn_y -30.554 _atom_site.Cartn_z -24.592 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 155 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #