data_4DBK
#
_model_server_result.job_id            x4Xsn-NR673lqvfH27F_cw 
_model_server_result.datetime_utc      '2024-12-26 14:31:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dbk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4DBK 
#
_exptl.entry_id    4DBK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DBK 
_cell.length_a            68.6 
_cell.length_b            68.6 
_cell.length_c            70.08 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.36 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 A SG CYS 84 A CYS 84 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc1 A O TYR 28 A TYR 28 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc2 A O GLY 30 A GLY 30 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc3 A O GLY 32 A GLY 32 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc4 A OD1 ASP 49 A ASP 49 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc5 A OD2 ASP 49 A ASP 49 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc6 A OE2 GLU 71 A GLU 71 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc7 A O SER 72 A SER 72 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc8 A OE1 GLU 92 A GLU 92 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc9 C CA CA . A CA 202 1_555 E O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc10 C CA CA . A CA 202 1_555 E O HOH . A HOH 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4DBK 
_atom_sites.fract_transf_matrix[1][1]    0.014577 
_atom_sites.fract_transf_matrix[1][2]    0.008416 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 201 1 CA CA . 
C 2 CA A 1 202 1 CA CA . 
D 3 BER A 1 203 1811 BER BER . 
E 4 HOH A 1 301 1 HOH HOH . 
E 4 HOH A 2 302 2 HOH HOH . 
E 4 HOH A 3 303 1 HOH HOH . 
E 4 HOH A 4 304 5 HOH HOH . 
E 4 HOH A 5 305 9 HOH HOH . 
E 4 HOH A 6 306 2 HOH HOH . 
E 4 HOH A 7 307 5 HOH HOH . 
E 4 HOH A 8 308 9 HOH HOH . 
E 4 HOH A 9 309 12 HOH HOH . 
E 4 HOH A 10 310 1 HOH HOH . 
E 4 HOH A 11 311 2 HOH HOH . 
E 4 HOH A 12 312 7 HOH HOH . 
E 4 HOH A 13 313 12 HOH HOH . 
E 4 HOH A 14 314 1 HOH HOH . 
E 4 HOH A 15 315 2 HOH HOH . 
E 4 HOH A 16 316 1 HOH HOH . 
E 4 HOH A 17 317 7 HOH HOH . 
E 4 HOH A 18 318 14 HOH HOH . 
E 4 HOH A 19 319 1 HOH HOH . 
E 4 HOH A 20 320 2 HOH HOH . 
E 4 HOH A 21 321 3 HOH HOH . 
E 4 HOH A 22 322 10 HOH HOH . 
E 4 HOH A 23 323 11 HOH HOH . 
E 4 HOH A 24 324 7 HOH HOH . 
E 4 HOH A 25 325 9 HOH HOH . 
E 4 HOH A 26 326 11 HOH HOH . 
E 4 HOH A 27 327 9 HOH HOH . 
E 4 HOH A 28 328 14 HOH HOH . 
E 4 HOH A 29 329 1 HOH HOH . 
E 4 HOH A 30 330 3 HOH HOH . 
E 4 HOH A 31 331 16 HOH HOH . 
E 4 HOH A 32 332 20 HOH HOH . 
E 4 HOH A 33 333 1 HOH HOH . 
E 4 HOH A 34 334 2 HOH HOH . 
E 4 HOH A 35 335 10 HOH HOH . 
E 4 HOH A 36 336 1 HOH HOH . 
E 4 HOH A 37 337 3 HOH HOH . 
E 4 HOH A 38 338 4 HOH HOH . 
E 4 HOH A 39 339 5 HOH HOH . 
E 4 HOH A 40 340 10 HOH HOH . 
E 4 HOH A 41 341 11 HOH HOH . 
E 4 HOH A 42 342 14 HOH HOH . 
E 4 HOH A 43 343 15 HOH HOH . 
E 4 HOH A 44 344 16 HOH HOH . 
E 4 HOH A 45 345 20 HOH HOH . 
E 4 HOH A 46 346 1 HOH HOH . 
E 4 HOH A 47 347 2 HOH HOH . 
E 4 HOH A 48 348 4 HOH HOH . 
E 4 HOH A 49 349 5 HOH HOH . 
E 4 HOH A 50 350 10 HOH HOH . 
E 4 HOH A 51 351 13 HOH HOH . 
E 4 HOH A 52 352 14 HOH HOH . 
E 4 HOH A 53 353 16 HOH HOH . 
E 4 HOH A 54 354 17 HOH HOH . 
E 4 HOH A 55 355 19 HOH HOH . 
E 4 HOH A 56 356 21 HOH HOH . 
E 4 HOH A 57 357 24 HOH HOH . 
E 4 HOH A 58 358 25 HOH HOH . 
E 4 HOH A 59 359 26 HOH HOH . 
E 4 HOH A 60 360 27 HOH HOH . 
E 4 HOH A 61 361 30 HOH HOH . 
E 4 HOH A 62 362 32 HOH HOH . 
E 4 HOH A 63 363 34 HOH HOH . 
E 4 HOH A 64 364 35 HOH HOH . 
E 4 HOH A 65 365 39 HOH HOH . 
E 4 HOH A 66 366 5 HOH HOH . 
E 4 HOH A 67 367 6 HOH HOH . 
E 4 HOH A 68 368 7 HOH HOH . 
E 4 HOH A 69 369 1 HOH HOH . 
E 4 HOH A 70 370 1 HOH HOH . 
E 4 HOH A 71 371 2 HOH HOH . 
E 4 HOH A 72 372 3 HOH HOH . 
E 4 HOH A 73 373 5 HOH HOH . 
E 4 HOH A 74 374 8 HOH HOH . 
E 4 HOH A 75 375 10 HOH HOH . 
E 4 HOH A 76 376 11 HOH HOH . 
E 4 HOH A 77 377 12 HOH HOH . 
E 4 HOH A 78 378 3 HOH HOH . 
E 4 HOH A 79 379 5 HOH HOH . 
E 4 HOH A 80 380 2 HOH HOH . 
E 4 HOH A 81 381 3 HOH HOH . 
E 4 HOH A 82 382 4 HOH HOH . 
E 4 HOH A 83 383 5 HOH HOH . 
E 4 HOH A 84 384 6 HOH HOH . 
E 4 HOH A 85 385 2 HOH HOH . 
E 4 HOH A 86 386 5 HOH HOH . 
E 4 HOH A 87 387 6 HOH HOH . 
E 4 HOH A 88 388 7 HOH HOH . 
E 4 HOH A 89 389 8 HOH HOH . 
E 4 HOH A 90 390 9 HOH HOH . 
E 4 HOH A 91 391 10 HOH HOH . 
E 4 HOH A 92 392 1 HOH HOH . 
E 4 HOH A 93 393 2 HOH HOH . 
E 4 HOH A 94 394 3 HOH HOH . 
E 4 HOH A 95 395 4 HOH HOH . 
E 4 HOH A 96 396 5 HOH HOH . 
E 4 HOH A 97 397 6 HOH HOH . 
E 4 HOH A 98 398 1 HOH HOH . 
E 4 HOH A 99 399 2 HOH HOH . 
E 4 HOH A 100 400 1 HOH HOH . 
E 4 HOH A 101 401 2 HOH HOH . 
E 4 HOH A 102 402 3 HOH HOH . 
E 4 HOH A 103 403 4 HOH HOH . 
E 4 HOH A 104 404 5 HOH HOH . 
E 4 HOH A 105 405 6 HOH HOH . 
E 4 HOH A 106 406 7 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               32.262 
_atom_site.Cartn_y               -0.29 
_atom_site.Cartn_z               -11.579 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        29.77 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#