data_4DBZ # _model_server_result.job_id 5XFePCpyvh1bkwuF4YipwA _model_server_result.datetime_utc '2024-11-25 03:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4DBZ # _exptl.entry_id 4DBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DBZ _cell.length_a 102.934 _cell.length_b 102.934 _cell.length_c 121.844 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 4DBZ _atom_sites.fract_transf_matrix[1][1] 0.009715 _atom_sites.fract_transf_matrix[1][2] 0.005609 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 301 NDP NDP . D 2 NDP B 1 301 301 NDP NDP . E 3 HOH A 1 401 1 HOH HOH . E 3 HOH A 2 402 2 HOH HOH . E 3 HOH A 3 403 3 HOH HOH . E 3 HOH A 4 404 4 HOH HOH . E 3 HOH A 5 405 5 HOH HOH . E 3 HOH A 6 406 6 HOH HOH . E 3 HOH A 7 407 7 HOH HOH . E 3 HOH A 8 408 8 HOH HOH . E 3 HOH A 9 409 9 HOH HOH . E 3 HOH A 10 410 10 HOH HOH . E 3 HOH A 11 411 11 HOH HOH . E 3 HOH A 12 412 13 HOH HOH . E 3 HOH A 13 413 14 HOH HOH . E 3 HOH A 14 414 15 HOH HOH . E 3 HOH A 15 415 16 HOH HOH . E 3 HOH A 16 416 18 HOH HOH . E 3 HOH A 17 417 19 HOH HOH . E 3 HOH A 18 418 20 HOH HOH . E 3 HOH A 19 419 22 HOH HOH . E 3 HOH A 20 420 23 HOH HOH . E 3 HOH A 21 421 24 HOH HOH . F 3 HOH B 1 401 12 HOH HOH . F 3 HOH B 2 402 17 HOH HOH . F 3 HOH B 3 403 25 HOH HOH . F 3 HOH B 4 404 26 HOH HOH . F 3 HOH B 5 405 27 HOH HOH . F 3 HOH B 6 406 28 HOH HOH . F 3 HOH B 7 407 29 HOH HOH . F 3 HOH B 8 408 30 HOH HOH . F 3 HOH B 9 409 31 HOH HOH . F 3 HOH B 10 410 32 HOH HOH . F 3 HOH B 11 411 33 HOH HOH . F 3 HOH B 12 412 34 HOH HOH . F 3 HOH B 13 413 35 HOH HOH . F 3 HOH B 14 414 36 HOH HOH . F 3 HOH B 15 415 37 HOH HOH . F 3 HOH B 16 416 38 HOH HOH . F 3 HOH B 17 417 39 HOH HOH . F 3 HOH B 18 418 40 HOH HOH . F 3 HOH B 19 419 41 HOH HOH . F 3 HOH B 20 420 42 HOH HOH . F 3 HOH B 21 421 43 HOH HOH . F 3 HOH B 22 422 44 HOH HOH . F 3 HOH B 23 423 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 27.073 40.539 24.311 1 44.08 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . C 2 28.65 40.53 24.337 1 51.28 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . C 2 26.542 42.003 24.489 1 40.52 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . C 2 26.538 39.549 25.427 1 43.61 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . C 2 26.832 38.141 25.391 1 39.13 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . C 2 26.401 37.36 26.615 1 42.26 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . C 2 26.713 35.958 26.515 1 42.29 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . C 2 26.993 37.813 27.899 1 43.54 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . C 2 25.996 37.694 28.866 1 45.38 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . C 2 28.063 36.896 28.098 1 42.82 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . C 2 28.433 36.798 29.432 1 45.36 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . C 2 27.516 35.595 27.583 1 37.38 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . C 2 28.5 34.611 27.121 1 41.66 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . C 2 29.516 34.826 26.249 1 41.6 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . C 2 30.215 33.679 26.049 1 40.93 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . C 2 29.632 32.716 26.791 1 40.82 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . C 2 29.924 31.367 26.966 1 42.35 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . C 2 31.048 30.76 26.285 1 41.39 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . C 2 29.15 30.636 27.775 1 42.31 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . C 2 28.114 31.223 28.403 1 42.72 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . C 2 27.804 32.527 28.26 1 38.96 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . C 2 28.55 33.299 27.462 1 42.17 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . C 2 26.648 39.964 22.911 1 45 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . C 2 25.352 40.274 21.992 1 38.99 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . C 2 25.693 41.354 21.006 1 38.06 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . C 2 24.136 40.684 22.717 1 43.12 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . C 2 25.041 38.96 21.226 1 46.32 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . C 2 24.197 37.939 21.667 1 42.68 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . C 2 23.928 36.883 20.601 1 44.67 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . C 2 23.433 37.512 19.461 1 42.73 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . C 2 25.168 36.101 20.153 1 44.76 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . C 2 24.909 34.785 19.727 1 41.26 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . C 2 25.644 36.846 19.044 1 45.91 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . C 2 26.465 36.083 18.196 1 45.7 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . C 2 24.364 37.268 18.385 1 45.37 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . C 2 24.447 38.381 17.438 1 47.45 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . C 2 24.719 39.652 17.837 1 45.39 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . C 2 24.78 40.68 16.889 1 46.04 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . C 2 25.082 42.16 17.271 1 46.25 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . C 2 25.236 42.982 16.36 1 46.61 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . C 2 25.167 42.585 18.65 1 41.83 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . C 2 24.558 40.405 15.551 1 45.66 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . C 2 24.277 39.098 15.169 1 49.4 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . C 2 24.23 38.117 16.141 1 44.26 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . C 2 29.897 36.438 29.896 1 43.98 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . C 2 30.964 37.135 29.012 1 43.67 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . C 2 30.07 34.941 29.844 1 38.97 ? O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . C 2 30.082 36.901 31.334 1 49.04 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #