data_4DC0 # _model_server_result.job_id d8tRl2MWe7_Rqa7sP7baYw _model_server_result.datetime_utc '2024-11-28 21:26:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4DC0 # _exptl.entry_id 4DC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DC0 _cell.length_a 103.527 _cell.length_b 103.527 _cell.length_c 123.232 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 4DC0 _atom_sites.fract_transf_matrix[1][1] 0.009659 _atom_sites.fract_transf_matrix[1][2] 0.005577 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008115 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 301 NDP NDP . D 2 NDP B 1 301 301 NDP NDP . E 3 HOH A 1 401 1 HOH HOH . E 3 HOH A 2 402 2 HOH HOH . E 3 HOH A 3 403 3 HOH HOH . E 3 HOH A 4 404 4 HOH HOH . E 3 HOH A 5 405 5 HOH HOH . E 3 HOH A 6 406 6 HOH HOH . E 3 HOH A 7 407 9 HOH HOH . E 3 HOH A 8 408 10 HOH HOH . E 3 HOH A 9 409 11 HOH HOH . E 3 HOH A 10 410 19 HOH HOH . E 3 HOH A 11 411 20 HOH HOH . E 3 HOH A 12 412 21 HOH HOH . E 3 HOH A 13 413 22 HOH HOH . E 3 HOH A 14 414 23 HOH HOH . E 3 HOH A 15 415 24 HOH HOH . E 3 HOH A 16 416 25 HOH HOH . E 3 HOH A 17 417 26 HOH HOH . E 3 HOH A 18 418 27 HOH HOH . E 3 HOH A 19 419 28 HOH HOH . E 3 HOH A 20 420 29 HOH HOH . E 3 HOH A 21 421 30 HOH HOH . E 3 HOH A 22 422 31 HOH HOH . E 3 HOH A 23 423 32 HOH HOH . E 3 HOH A 24 424 33 HOH HOH . E 3 HOH A 25 425 34 HOH HOH . E 3 HOH A 26 426 35 HOH HOH . F 3 HOH B 1 401 7 HOH HOH . F 3 HOH B 2 402 8 HOH HOH . F 3 HOH B 3 403 12 HOH HOH . F 3 HOH B 4 404 13 HOH HOH . F 3 HOH B 5 405 14 HOH HOH . F 3 HOH B 6 406 15 HOH HOH . F 3 HOH B 7 407 16 HOH HOH . F 3 HOH B 8 408 17 HOH HOH . F 3 HOH B 9 409 18 HOH HOH . F 3 HOH B 10 410 36 HOH HOH . F 3 HOH B 11 411 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 -27.755 -40.818 24.444 1 49.9 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . C 2 -29.328 -40.737 24.508 1 50.41 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . C 2 -27.268 -42.232 24.923 1 41.56 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . C 2 -27.073 -39.645 25.275 1 46.44 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . C 2 -27.608 -38.318 25.417 1 38.8 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . C 2 -27.129 -37.583 26.653 1 40.16 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . C 2 -27.435 -36.181 26.594 1 40.58 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . C 2 -27.726 -38.062 27.933 1 45.48 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . C 2 -26.794 -37.99 28.954 1 43.57 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . C 2 -28.771 -37.141 28.171 1 41.83 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . C 2 -29.043 -37.07 29.512 1 41.63 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . C 2 -28.204 -35.842 27.7 1 37.66 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . C 2 -29.192 -34.847 27.294 1 39.34 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . C 2 -30.269 -35.026 26.497 1 38.25 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . C 2 -30.931 -33.859 26.335 1 33.03 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . C 2 -30.258 -32.929 27.034 1 35.69 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . C 2 -30.47 -31.578 27.238 1 38.82 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . C 2 -31.616 -30.924 26.63 1 41.05 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . C 2 -29.612 -30.887 27.997 1 34.22 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . C 2 -28.568 -31.51 28.558 1 35.05 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . C 2 -28.34 -32.818 28.383 1 34.41 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . C 2 -29.167 -33.545 27.63 1 38.82 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . C 2 -27.43 -40.675 22.916 1 56.26 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . C 2 -26.013 -40.655 22.157 1 41.83 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . C 2 -26.054 -41.712 21.102 1 41.97 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . C 2 -24.871 -40.94 23.054 1 47.94 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . C 2 -25.863 -39.244 21.513 1 44.04 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . C 2 -24.715 -38.465 21.665 1 42.97 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . C 2 -24.51 -37.376 20.626 1 41.54 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . C 2 -23.996 -37.974 19.492 1 46.62 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . C 2 -25.761 -36.638 20.136 1 48.54 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . C 2 -25.463 -35.369 19.606 1 45.35 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . C 2 -26.226 -37.46 19.07 1 51.74 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . C 2 -27.096 -36.826 18.163 1 47.62 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . C 2 -24.93 -37.766 18.415 1 48.54 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . C 2 -24.945 -38.874 17.488 1 46.05 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . C 2 -25.326 -40.113 17.875 1 41.99 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . C 2 -25.305 -41.137 16.923 1 43.26 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . C 2 -25.703 -42.582 17.292 1 42.21 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . C 2 -25.941 -43.386 16.393 1 46.56 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . C 2 -25.766 -42.98 18.672 1 46.42 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . C 2 -24.906 -40.894 15.618 1 40.8 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . C 2 -24.521 -39.606 15.257 1 46.29 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . C 2 -24.554 -38.618 16.225 1 43.48 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . C 2 -30.474 -36.62 29.983 1 43 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . C 2 -31.506 -37.45 29.167 1 35.14 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . C 2 -30.603 -35.127 29.779 1 32.05 ? O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . C 2 -30.639 -36.927 31.477 1 39.41 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #