data_4DC1
#
_model_server_result.job_id            rLiFuvuzdq0XrQSy4HWQDA 
_model_server_result.datetime_utc      '2024-11-25 00:31:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dc1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4DC1 
#
_exptl.entry_id    4DC1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DC1 
_cell.length_a            104.202 
_cell.length_b            104.202 
_cell.length_c            123.295 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DC1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     4DC1 
_atom_sites.fract_transf_matrix[1][1]    0.009597 
_atom_sites.fract_transf_matrix[1][2]    0.005541 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011081 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 301 301 NDP NDP . 
D 2 NDP B 1 301 301 NDP NDP . 
E 3 HOH A 1 401 1 HOH HOH . 
E 3 HOH A 2 402 2 HOH HOH . 
E 3 HOH A 3 403 3 HOH HOH . 
E 3 HOH A 4 404 4 HOH HOH . 
E 3 HOH A 5 405 5 HOH HOH . 
E 3 HOH A 6 406 7 HOH HOH . 
E 3 HOH A 7 407 8 HOH HOH . 
E 3 HOH A 8 408 9 HOH HOH . 
E 3 HOH A 9 409 10 HOH HOH . 
E 3 HOH A 10 410 11 HOH HOH . 
E 3 HOH A 11 411 12 HOH HOH . 
E 3 HOH A 12 412 13 HOH HOH . 
E 3 HOH A 13 413 14 HOH HOH . 
E 3 HOH A 14 414 15 HOH HOH . 
E 3 HOH A 15 415 16 HOH HOH . 
E 3 HOH A 16 416 18 HOH HOH . 
E 3 HOH A 17 417 19 HOH HOH . 
E 3 HOH A 18 418 20 HOH HOH . 
E 3 HOH A 19 419 21 HOH HOH . 
E 3 HOH A 20 420 22 HOH HOH . 
E 3 HOH A 21 421 23 HOH HOH . 
E 3 HOH A 22 422 38 HOH HOH . 
F 3 HOH B 1 401 24 HOH HOH . 
F 3 HOH B 2 402 25 HOH HOH . 
F 3 HOH B 3 403 26 HOH HOH . 
F 3 HOH B 4 404 27 HOH HOH . 
F 3 HOH B 5 405 28 HOH HOH . 
F 3 HOH B 6 406 29 HOH HOH . 
F 3 HOH B 7 407 30 HOH HOH . 
F 3 HOH B 8 408 31 HOH HOH . 
F 3 HOH B 9 409 33 HOH HOH . 
F 3 HOH B 10 410 34 HOH HOH . 
F 3 HOH B 11 411 35 HOH HOH . 
F 3 HOH B 12 412 36 HOH HOH . 
F 3 HOH B 13 413 37 HOH HOH . 
F 3 HOH B 14 414 39 HOH HOH . 
F 3 HOH B 15 415 40 HOH HOH . 
F 3 HOH B 16 416 41 HOH HOH . 
F 3 HOH B 17 417 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 2 -9.207 33.282 -0.334 1 44.06 ? PA NDP 301 B 1 
HETATM 2 O O1A NDP . . . D 2 -9.854 32.862 -1.713 1 49.27 ? O1A NDP 301 B 1 
HETATM 3 O O2A NDP . . . D 2 -9.861 32.463 0.834 1 39.96 ? O2A NDP 301 B 1 
HETATM 4 O O5B NDP . . . D 2 -9.305 34.866 -0.2 1 40.68 ? O5B NDP 301 B 1 
HETATM 5 C C5B NDP . . . D 2 -8.935 35.692 -1.318 1 33.55 ? C5B NDP 301 B 1 
HETATM 6 C C4B NDP . . . D 2 -9.516 37.081 -1.323 1 35.19 ? C4B NDP 301 B 1 
HETATM 7 O O4B NDP . . . D 2 -8.931 37.906 -2.346 1 33.55 ? O4B NDP 301 B 1 
HETATM 8 C C3B NDP . . . D 2 -10.994 37.135 -1.526 1 41.48 ? C3B NDP 301 B 1 
HETATM 9 O O3B NDP . . . D 2 -11.533 38.039 -0.61 1 40.54 ? O3B NDP 301 B 1 
HETATM 10 C C2B NDP . . . D 2 -11.16 37.623 -2.848 1 37.82 ? C2B NDP 301 B 1 
HETATM 11 O O2B NDP . . . D 2 -12.329 38.357 -2.935 1 40.1 ? O2B NDP 301 B 1 
HETATM 12 C C1B NDP . . . D 2 -9.967 38.523 -3.04 1 33.58 ? C1B NDP 301 B 1 
HETATM 13 N N9A NDP . . . D 2 -9.619 38.788 -4.446 1 34.38 ? N9A NDP 301 B 1 
HETATM 14 C C8A NDP . . . D 2 -9.336 37.876 -5.409 1 34.46 ? C8A NDP 301 B 1 
HETATM 15 N N7A NDP . . . D 2 -9.06 38.5 -6.58 1 31.7 ? N7A NDP 301 B 1 
HETATM 16 C C5A NDP . . . D 2 -9.177 39.831 -6.366 1 33.18 ? C5A NDP 301 B 1 
HETATM 17 C C6A NDP . . . D 2 -9.015 40.947 -7.188 1 33.41 ? C6A NDP 301 B 1 
HETATM 18 N N6A NDP . . . D 2 -8.66 40.791 -8.588 1 36.37 ? N6A NDP 301 B 1 
HETATM 19 N N1A NDP . . . D 2 -9.2 42.176 -6.683 1 29.08 ? N1A NDP 301 B 1 
HETATM 20 C C2A NDP . . . D 2 -9.536 42.314 -5.397 1 27.9 ? C2A NDP 301 B 1 
HETATM 21 N N3A NDP . . . D 2 -9.686 41.255 -4.583 1 28.2 ? N3A NDP 301 B 1 
HETATM 22 C C4A NDP . . . D 2 -9.524 40.008 -5.029 1 32.7 ? C4A NDP 301 B 1 
HETATM 23 O O3 NDP . . . D 2 -7.717 32.833 -0.46 1 49.64 ? O3 NDP 301 B 1 
HETATM 24 P PN NDP . . . D 2 -6.526 32.928 0.603 1 36.83 ? PN NDP 301 B 1 
HETATM 25 O O1N NDP . . . D 2 -6.039 31.543 0.866 1 44.97 ? O1N NDP 301 B 1 
HETATM 26 O O2N NDP . . . D 2 -6.903 33.554 1.886 1 36.81 ? O2N NDP 301 B 1 
HETATM 27 O O5D NDP . . . D 2 -5.369 33.714 -0.089 1 43.03 ? O5D NDP 301 B 1 
HETATM 28 C C5D NDP . . . D 2 -5.002 35.019 0.273 1 40.15 ? C5D NDP 301 B 1 
HETATM 29 C C4D NDP . . . D 2 -3.572 35.379 -0.094 1 38.12 ? C4D NDP 301 B 1 
HETATM 30 O O4D NDP . . . D 2 -2.704 34.524 0.578 1 39.16 ? O4D NDP 301 B 1 
HETATM 31 C C3D NDP . . . D 2 -3.244 35.226 -1.583 1 43.85 ? C3D NDP 301 B 1 
HETATM 32 O O3D NDP . . . D 2 -2.207 36.07 -2.016 1 43.38 ? O3D NDP 301 B 1 
HETATM 33 C C2D NDP . . . D 2 -2.791 33.884 -1.681 1 47.19 ? C2D NDP 301 B 1 
HETATM 34 O O2D NDP . . . D 2 -2.044 33.607 -2.849 1 37.98 ? O2D NDP 301 B 1 
HETATM 35 C C1D NDP . . . D 2 -1.972 33.787 -0.428 1 44.95 ? C1D NDP 301 B 1 
HETATM 36 N N1N NDP . . . D 2 -1.589 32.432 -0.061 1 43.97 ? N1N NDP 301 B 1 
HETATM 37 C C2N NDP . . . D 2 -2.509 31.531 0.372 1 40.98 ? C2N NDP 301 B 1 
HETATM 38 C C3N NDP . . . D 2 -2.092 30.238 0.696 1 41.74 ? C3N NDP 301 B 1 
HETATM 39 C C7N NDP . . . D 2 -3.098 29.168 1.218 1 42.61 ? C7N NDP 301 B 1 
HETATM 40 O O7N NDP . . . D 2 -2.944 27.972 0.947 1 47.41 ? O7N NDP 301 B 1 
HETATM 41 N N7N NDP . . . D 2 -4.201 29.558 2.054 1 44.46 ? N7N NDP 301 B 1 
HETATM 42 C C4N NDP . . . D 2 -0.748 29.89 0.57 1 43.81 ? C4N NDP 301 B 1 
HETATM 43 C C5N NDP . . . D 2 0.18 30.827 0.112 1 40.74 ? C5N NDP 301 B 1 
HETATM 44 C C6N NDP . . . D 2 -0.286 32.095 -0.193 1 39.33 ? C6N NDP 301 B 1 
HETATM 45 P P2B NDP . . . D 2 -13.239 38.39 -4.232 1 43.6 ? P2B NDP 301 B 1 
HETATM 46 O O1X NDP . . . D 2 -12.801 39.569 -5.152 1 32.4 ? O1X NDP 301 B 1 
HETATM 47 O O2X NDP . . . D 2 -14.667 38.643 -3.782 1 27.82 ? O2X NDP 301 B 1 
HETATM 48 O O3X NDP . . . D 2 -13.078 37.067 -5.007 1 33.38 ? O3X NDP 301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#