data_4DC2 # _model_server_result.job_id aVbzMymAsuHzSJ7DBnJxaQ _model_server_result.datetime_utc '2025-03-09 02:05:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4DC2 # _exptl.entry_id 4DC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.18 _cell.angle_gamma 90 _cell.entry_id 4DC2 _cell.length_a 101.456 _cell.length_b 54.9 _cell.length_c 82.489 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 363 A LEU 553 1_555 A N TPO 364 A TPO 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 364 A TPO 554 1_555 A N PRO 365 A PRO 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 4DC2 _atom_sites.fract_transf_matrix[1][1] 0.009856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADE A 1 601 1 ADE ANP . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 4 HOH HOH . D 4 HOH A 4 704 5 HOH HOH . D 4 HOH A 5 705 6 HOH HOH . D 4 HOH A 6 706 7 HOH HOH . D 4 HOH A 7 707 8 HOH HOH . D 4 HOH A 8 708 9 HOH HOH . D 4 HOH A 9 709 10 HOH HOH . D 4 HOH A 10 710 11 HOH HOH . D 4 HOH A 11 711 12 HOH HOH . D 4 HOH A 12 712 15 HOH HOH . D 4 HOH A 13 713 16 HOH HOH . D 4 HOH A 14 714 17 HOH HOH . D 4 HOH A 15 715 18 HOH HOH . D 4 HOH A 16 716 20 HOH HOH . D 4 HOH A 17 717 22 HOH HOH . D 4 HOH A 18 718 23 HOH HOH . D 4 HOH A 19 719 24 HOH HOH . D 4 HOH A 20 720 26 HOH HOH . D 4 HOH A 21 721 28 HOH HOH . D 4 HOH A 22 722 29 HOH HOH . D 4 HOH A 23 723 30 HOH HOH . D 4 HOH A 24 724 31 HOH HOH . D 4 HOH A 25 725 32 HOH HOH . D 4 HOH A 26 726 33 HOH HOH . D 4 HOH A 27 727 34 HOH HOH . D 4 HOH A 28 728 35 HOH HOH . D 4 HOH A 29 729 36 HOH HOH . D 4 HOH A 30 730 37 HOH HOH . D 4 HOH A 31 731 40 HOH HOH . D 4 HOH A 32 732 43 HOH HOH . D 4 HOH A 33 733 45 HOH HOH . D 4 HOH A 34 734 46 HOH HOH . D 4 HOH A 35 735 47 HOH HOH . D 4 HOH A 36 736 48 HOH HOH . D 4 HOH A 37 737 49 HOH HOH . D 4 HOH A 38 738 50 HOH HOH . D 4 HOH A 39 739 51 HOH HOH . D 4 HOH A 40 740 52 HOH HOH . D 4 HOH A 41 741 53 HOH HOH . D 4 HOH A 42 742 54 HOH HOH . D 4 HOH A 43 743 55 HOH HOH . D 4 HOH A 44 744 56 HOH HOH . D 4 HOH A 45 745 57 HOH HOH . D 4 HOH A 46 746 58 HOH HOH . D 4 HOH A 47 747 59 HOH HOH . D 4 HOH A 48 748 60 HOH HOH . E 4 HOH Z 1 1101 3 HOH HOH . E 4 HOH Z 2 1102 19 HOH HOH . E 4 HOH Z 3 1103 27 HOH HOH . E 4 HOH Z 4 1104 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . C 3 9.296 -6.707 17.944 1 46.61 ? N9 ADE 601 A 1 HETATM 2 C C8 ADE . . . C 3 9.364 -7.73 17.08 1 49.16 ? C8 ADE 601 A 1 HETATM 3 N N7 ADE . . . C 3 8.814 -7.325 15.922 1 46.46 ? N7 ADE 601 A 1 HETATM 4 C C5 ADE . . . C 3 8.399 -6.043 16.04 1 44.49 ? C5 ADE 601 A 1 HETATM 5 C C6 ADE . . . C 3 7.77 -5.125 15.181 1 36.95 ? C6 ADE 601 A 1 HETATM 6 N N6 ADE . . . C 3 7.403 -5.469 13.805 1 40.97 ? N6 ADE 601 A 1 HETATM 7 N N1 ADE . . . C 3 7.485 -3.901 15.624 1 37.34 ? N1 ADE 601 A 1 HETATM 8 C C2 ADE . . . C 3 7.792 -3.55 16.879 1 42.92 ? C2 ADE 601 A 1 HETATM 9 N N3 ADE . . . C 3 8.389 -4.397 17.725 1 41.87 ? N3 ADE 601 A 1 HETATM 10 C C4 ADE . . . C 3 8.707 -5.647 17.341 1 47.09 ? C4 ADE 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #