data_4DC3 # _model_server_result.job_id n9oiMwc8p_3uOPw8NSY08g _model_server_result.datetime_utc '2024-10-19 03:49:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4DC3 # _exptl.entry_id 4DC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DC3 _cell.length_a 59.35 _cell.length_b 179.39 _cell.length_c 79.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 35 n n O5' HO5' ADN sing 36 n n C5' C4' ADN sing 37 n n C5' "H5'1" ADN sing 38 n n C5' "H5'2" ADN sing 39 n n C4' O4' ADN sing 40 n n C4' C3' ADN sing 41 n n C4' H4' ADN sing 42 n n O4' C1' ADN sing 43 n n C3' O3' ADN sing 44 n n C3' C2' ADN sing 45 n n C3' H3' ADN sing 46 n n O3' HO3' ADN sing 47 n n C2' O2' ADN sing 48 n n C2' C1' ADN sing 49 n n C2' H2' ADN sing 50 n n O2' HO2' ADN sing 51 n n C1' N9 ADN sing 52 n n C1' H1' ADN sing 53 n n N9 C8 ADN sing 54 n y N9 C4 ADN sing 55 n y C8 N7 ADN doub 56 n y C8 H8 ADN sing 57 n n N7 C5 ADN sing 58 n y C5 C6 ADN sing 59 n y C5 C4 ADN doub 60 n y C6 N6 ADN sing 61 n n C6 N1 ADN doub 62 n y N6 HN61 ADN sing 63 n n N6 HN62 ADN sing 64 n n N1 C2 ADN sing 65 n y C2 N3 ADN doub 66 n y C2 H2 ADN sing 67 n n N3 C4 ADN sing 68 n y # _atom_sites.entry_id 4DC3 _atom_sites.fract_transf_matrix[1][1] 0.016849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADN A 1 401 401 ADN ADN . D 3 CL A 1 402 402 CL CL . E 4 2FA B 1 401 401 2FA 2FA . F 3 CL B 1 402 402 CL CL . G 5 HOH A 1 501 501 HOH HOH . G 5 HOH A 2 502 502 HOH HOH . G 5 HOH A 3 503 503 HOH HOH . G 5 HOH A 4 504 504 HOH HOH . G 5 HOH A 5 505 505 HOH HOH . G 5 HOH A 6 506 506 HOH HOH . G 5 HOH A 7 507 507 HOH HOH . G 5 HOH A 8 508 508 HOH HOH . G 5 HOH A 9 509 509 HOH HOH . G 5 HOH A 10 510 510 HOH HOH . G 5 HOH A 11 511 511 HOH HOH . G 5 HOH A 12 512 512 HOH HOH . G 5 HOH A 13 513 513 HOH HOH . G 5 HOH A 14 514 514 HOH HOH . G 5 HOH A 15 515 515 HOH HOH . G 5 HOH A 16 516 516 HOH HOH . G 5 HOH A 17 517 517 HOH HOH . G 5 HOH A 18 518 518 HOH HOH . G 5 HOH A 19 519 519 HOH HOH . G 5 HOH A 20 520 520 HOH HOH . G 5 HOH A 21 521 521 HOH HOH . G 5 HOH A 22 522 522 HOH HOH . G 5 HOH A 23 523 523 HOH HOH . G 5 HOH A 24 524 524 HOH HOH . G 5 HOH A 25 525 525 HOH HOH . G 5 HOH A 26 526 526 HOH HOH . G 5 HOH A 27 527 527 HOH HOH . G 5 HOH A 28 528 528 HOH HOH . G 5 HOH A 29 529 529 HOH HOH . G 5 HOH A 30 530 530 HOH HOH . G 5 HOH A 31 531 531 HOH HOH . G 5 HOH A 32 532 532 HOH HOH . G 5 HOH A 33 533 533 HOH HOH . G 5 HOH A 34 534 534 HOH HOH . G 5 HOH A 35 535 535 HOH HOH . G 5 HOH A 36 536 536 HOH HOH . G 5 HOH A 37 537 537 HOH HOH . G 5 HOH A 38 538 538 HOH HOH . G 5 HOH A 39 539 539 HOH HOH . G 5 HOH A 40 540 540 HOH HOH . G 5 HOH A 41 541 541 HOH HOH . G 5 HOH A 42 542 542 HOH HOH . G 5 HOH A 43 543 543 HOH HOH . G 5 HOH A 44 544 544 HOH HOH . G 5 HOH A 45 545 545 HOH HOH . G 5 HOH A 46 546 546 HOH HOH . G 5 HOH A 47 547 547 HOH HOH . G 5 HOH A 48 548 548 HOH HOH . G 5 HOH A 49 549 549 HOH HOH . G 5 HOH A 50 550 550 HOH HOH . G 5 HOH A 51 551 551 HOH HOH . G 5 HOH A 52 552 552 HOH HOH . G 5 HOH A 53 553 553 HOH HOH . G 5 HOH A 54 554 554 HOH HOH . G 5 HOH A 55 555 555 HOH HOH . G 5 HOH A 56 556 556 HOH HOH . G 5 HOH A 57 557 557 HOH HOH . G 5 HOH A 58 558 558 HOH HOH . G 5 HOH A 59 559 559 HOH HOH . G 5 HOH A 60 560 560 HOH HOH . G 5 HOH A 61 561 561 HOH HOH . G 5 HOH A 62 562 562 HOH HOH . G 5 HOH A 63 563 563 HOH HOH . G 5 HOH A 64 564 564 HOH HOH . G 5 HOH A 65 565 565 HOH HOH . G 5 HOH A 66 566 566 HOH HOH . G 5 HOH A 67 567 567 HOH HOH . G 5 HOH A 68 568 568 HOH HOH . G 5 HOH A 69 569 569 HOH HOH . G 5 HOH A 70 570 570 HOH HOH . G 5 HOH A 71 571 571 HOH HOH . G 5 HOH A 72 572 572 HOH HOH . G 5 HOH A 73 573 573 HOH HOH . G 5 HOH A 74 574 574 HOH HOH . G 5 HOH A 75 575 575 HOH HOH . G 5 HOH A 76 576 576 HOH HOH . G 5 HOH A 77 577 577 HOH HOH . G 5 HOH A 78 578 578 HOH HOH . G 5 HOH A 79 579 579 HOH HOH . G 5 HOH A 80 580 580 HOH HOH . G 5 HOH A 81 581 581 HOH HOH . G 5 HOH A 82 582 583 HOH HOH . G 5 HOH A 83 583 584 HOH HOH . G 5 HOH A 84 584 585 HOH HOH . G 5 HOH A 85 585 586 HOH HOH . G 5 HOH A 86 586 587 HOH HOH . G 5 HOH A 87 587 588 HOH HOH . G 5 HOH A 88 588 589 HOH HOH . G 5 HOH A 89 589 590 HOH HOH . G 5 HOH A 90 590 591 HOH HOH . G 5 HOH A 91 591 592 HOH HOH . G 5 HOH A 92 592 593 HOH HOH . G 5 HOH A 93 593 594 HOH HOH . G 5 HOH A 94 594 595 HOH HOH . G 5 HOH A 95 595 596 HOH HOH . G 5 HOH A 96 596 597 HOH HOH . G 5 HOH A 97 597 598 HOH HOH . G 5 HOH A 98 598 599 HOH HOH . G 5 HOH A 99 599 600 HOH HOH . G 5 HOH A 100 600 601 HOH HOH . G 5 HOH A 101 601 602 HOH HOH . G 5 HOH A 102 602 603 HOH HOH . G 5 HOH A 103 603 604 HOH HOH . G 5 HOH A 104 604 605 HOH HOH . G 5 HOH A 105 605 606 HOH HOH . G 5 HOH A 106 606 607 HOH HOH . G 5 HOH A 107 607 608 HOH HOH . G 5 HOH A 108 608 609 HOH HOH . G 5 HOH A 109 609 610 HOH HOH . G 5 HOH A 110 610 611 HOH HOH . G 5 HOH A 111 611 612 HOH HOH . G 5 HOH A 112 612 613 HOH HOH . G 5 HOH A 113 613 614 HOH HOH . G 5 HOH A 114 614 615 HOH HOH . G 5 HOH A 115 615 616 HOH HOH . G 5 HOH A 116 616 617 HOH HOH . G 5 HOH A 117 617 618 HOH HOH . G 5 HOH A 118 618 619 HOH HOH . G 5 HOH A 119 619 620 HOH HOH . G 5 HOH A 120 620 621 HOH HOH . G 5 HOH A 121 621 622 HOH HOH . G 5 HOH A 122 622 623 HOH HOH . G 5 HOH A 123 623 624 HOH HOH . G 5 HOH A 124 624 625 HOH HOH . G 5 HOH A 125 625 626 HOH HOH . H 5 HOH B 1 501 582 HOH HOH . H 5 HOH B 2 502 501 HOH HOH . H 5 HOH B 3 503 502 HOH HOH . H 5 HOH B 4 504 503 HOH HOH . H 5 HOH B 5 505 504 HOH HOH . H 5 HOH B 6 506 505 HOH HOH . H 5 HOH B 7 507 506 HOH HOH . H 5 HOH B 8 508 507 HOH HOH . H 5 HOH B 9 509 508 HOH HOH . H 5 HOH B 10 510 509 HOH HOH . H 5 HOH B 11 511 510 HOH HOH . H 5 HOH B 12 512 511 HOH HOH . H 5 HOH B 13 513 512 HOH HOH . H 5 HOH B 14 514 513 HOH HOH . H 5 HOH B 15 515 514 HOH HOH . H 5 HOH B 16 516 515 HOH HOH . H 5 HOH B 17 517 516 HOH HOH . H 5 HOH B 18 518 517 HOH HOH . H 5 HOH B 19 519 518 HOH HOH . H 5 HOH B 20 520 519 HOH HOH . H 5 HOH B 21 521 520 HOH HOH . H 5 HOH B 22 522 521 HOH HOH . H 5 HOH B 23 523 522 HOH HOH . H 5 HOH B 24 524 523 HOH HOH . H 5 HOH B 25 525 524 HOH HOH . H 5 HOH B 26 526 525 HOH HOH . H 5 HOH B 27 527 526 HOH HOH . H 5 HOH B 28 528 527 HOH HOH . H 5 HOH B 29 529 528 HOH HOH . H 5 HOH B 30 530 529 HOH HOH . H 5 HOH B 31 531 530 HOH HOH . H 5 HOH B 32 532 531 HOH HOH . H 5 HOH B 33 533 532 HOH HOH . H 5 HOH B 34 534 533 HOH HOH . H 5 HOH B 35 535 534 HOH HOH . H 5 HOH B 36 536 535 HOH HOH . H 5 HOH B 37 537 536 HOH HOH . H 5 HOH B 38 538 537 HOH HOH . H 5 HOH B 39 539 538 HOH HOH . H 5 HOH B 40 540 539 HOH HOH . H 5 HOH B 41 541 540 HOH HOH . H 5 HOH B 42 542 541 HOH HOH . H 5 HOH B 43 543 542 HOH HOH . H 5 HOH B 44 544 543 HOH HOH . H 5 HOH B 45 545 544 HOH HOH . H 5 HOH B 46 546 545 HOH HOH . H 5 HOH B 47 547 546 HOH HOH . H 5 HOH B 48 548 547 HOH HOH . H 5 HOH B 49 549 548 HOH HOH . H 5 HOH B 50 550 549 HOH HOH . H 5 HOH B 51 551 550 HOH HOH . H 5 HOH B 52 552 551 HOH HOH . H 5 HOH B 53 553 552 HOH HOH . H 5 HOH B 54 554 553 HOH HOH . H 5 HOH B 55 555 554 HOH HOH . H 5 HOH B 56 556 555 HOH HOH . H 5 HOH B 57 557 556 HOH HOH . H 5 HOH B 58 558 557 HOH HOH . H 5 HOH B 59 559 558 HOH HOH . H 5 HOH B 60 560 559 HOH HOH . H 5 HOH B 61 561 560 HOH HOH . H 5 HOH B 62 562 561 HOH HOH . H 5 HOH B 63 563 562 HOH HOH . H 5 HOH B 64 564 563 HOH HOH . H 5 HOH B 65 565 564 HOH HOH . H 5 HOH B 66 566 565 HOH HOH . H 5 HOH B 67 567 566 HOH HOH . H 5 HOH B 68 568 567 HOH HOH . H 5 HOH B 69 569 568 HOH HOH . H 5 HOH B 70 570 569 HOH HOH . H 5 HOH B 71 571 570 HOH HOH . H 5 HOH B 72 572 571 HOH HOH . H 5 HOH B 73 573 572 HOH HOH . H 5 HOH B 74 574 573 HOH HOH . H 5 HOH B 75 575 574 HOH HOH . H 5 HOH B 76 576 575 HOH HOH . H 5 HOH B 77 577 576 HOH HOH . H 5 HOH B 78 578 577 HOH HOH . H 5 HOH B 79 579 578 HOH HOH . H 5 HOH B 80 580 579 HOH HOH . H 5 HOH B 81 581 580 HOH HOH . H 5 HOH B 82 582 581 HOH HOH . H 5 HOH B 83 583 582 HOH HOH . H 5 HOH B 84 584 583 HOH HOH . H 5 HOH B 85 585 584 HOH HOH . H 5 HOH B 86 586 585 HOH HOH . H 5 HOH B 87 587 586 HOH HOH . H 5 HOH B 88 588 587 HOH HOH . H 5 HOH B 89 589 588 HOH HOH . H 5 HOH B 90 590 589 HOH HOH . H 5 HOH B 91 591 590 HOH HOH . H 5 HOH B 92 592 591 HOH HOH . H 5 HOH B 93 593 592 HOH HOH . H 5 HOH B 94 594 593 HOH HOH . H 5 HOH B 95 595 594 HOH HOH . H 5 HOH B 96 596 595 HOH HOH . H 5 HOH B 97 597 596 HOH HOH . H 5 HOH B 98 598 597 HOH HOH . H 5 HOH B 99 599 598 HOH HOH . H 5 HOH B 100 600 599 HOH HOH . H 5 HOH B 101 601 600 HOH HOH . H 5 HOH B 102 602 601 HOH HOH . H 5 HOH B 103 603 602 HOH HOH . H 5 HOH B 104 604 603 HOH HOH . H 5 HOH B 105 605 604 HOH HOH . H 5 HOH B 106 606 605 HOH HOH . H 5 HOH B 107 607 606 HOH HOH . H 5 HOH B 108 608 607 HOH HOH . H 5 HOH B 109 609 608 HOH HOH . H 5 HOH B 110 610 609 HOH HOH . H 5 HOH B 111 611 610 HOH HOH . H 5 HOH B 112 612 611 HOH HOH . H 5 HOH B 113 613 612 HOH HOH . H 5 HOH B 114 614 613 HOH HOH . H 5 HOH B 115 615 614 HOH HOH . H 5 HOH B 116 616 615 HOH HOH . H 5 HOH B 117 617 616 HOH HOH . H 5 HOH B 118 618 617 HOH HOH . H 5 HOH B 119 619 618 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . C 2 21.666 -22.629 -28.563 1 32.84 ? O5' ADN 401 A 1 HETATM 2 C C5' ADN . . . C 2 21.504 -21.589 -27.605 1 30.41 ? C5' ADN 401 A 1 HETATM 3 C C4' ADN . . . C 2 22.119 -21.962 -26.279 1 26.78 ? C4' ADN 401 A 1 HETATM 4 O O4' ADN . . . C 2 23.554 -22.022 -26.425 1 23.29 ? O4' ADN 401 A 1 HETATM 5 C C3' ADN . . . C 2 21.838 -20.991 -25.123 1 22.05 ? C3' ADN 401 A 1 HETATM 6 O O3' ADN . . . C 2 21.199 -21.689 -24.055 1 23.49 ? O3' ADN 401 A 1 HETATM 7 C C2' ADN . . . C 2 23.232 -20.521 -24.675 1 22.88 ? C2' ADN 401 A 1 HETATM 8 O O2' ADN . . . C 2 23.382 -20.372 -23.278 1 19.47 ? O2' ADN 401 A 1 HETATM 9 C C1' ADN . . . C 2 24.144 -21.614 -25.22 1 23.33 ? C1' ADN 401 A 1 HETATM 10 N N9 ADN . . . C 2 25.507 -21.16 -25.503 1 21.68 ? N9 ADN 401 A 1 HETATM 11 C C8 ADN . . . C 2 25.863 -20.021 -26.17 1 22.71 ? C8 ADN 401 A 1 HETATM 12 N N7 ADN . . . C 2 27.218 -19.945 -26.226 1 20.86 ? N7 ADN 401 A 1 HETATM 13 C C5 ADN . . . C 2 27.741 -21.051 -25.581 1 23.4 ? C5 ADN 401 A 1 HETATM 14 C C6 ADN . . . C 2 29.072 -21.53 -25.309 1 21.36 ? C6 ADN 401 A 1 HETATM 15 N N6 ADN . . . C 2 30.209 -20.803 -25.743 1 22.61 ? N6 ADN 401 A 1 HETATM 16 N N1 ADN . . . C 2 29.222 -22.69 -24.628 1 22.8 ? N1 ADN 401 A 1 HETATM 17 C C2 ADN . . . C 2 28.138 -23.416 -24.197 1 19.06 ? C2 ADN 401 A 1 HETATM 18 N N3 ADN . . . C 2 26.881 -22.994 -24.436 1 23.1 ? N3 ADN 401 A 1 HETATM 19 C C4 ADN . . . C 2 26.654 -21.814 -25.125 1 22.83 ? C4 ADN 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #